bridgehead/minimal/modules/exporter-compose.yml

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version: "3.7"
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services:
exporter:
image: docker.verbis.dkfz.de/ccp/dktk-exporter:latest
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container_name: bridgehead-${PROJECT}-exporter
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environment:
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JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
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LOG_LEVEL: "INFO"
EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
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CROSS_ORIGINS: "https://${HOST}"
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EXPORTER_DB_USER: "exporter"
EXPORTER_DB_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
EXPORTER_DB_URL: "jdbc:postgresql://exporter-db:5432/exporter"
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HTTP_RELATIVE_PATH: "/${PROJECT}-exporter"
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SITE: "${SITE_ID}"
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HTTP_SERVLET_REQUEST_SCHEME: "https"
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OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
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labels:
- "traefik.enable=true"
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- "traefik.http.routers.exporter_${PROJECT}.rule=PathPrefix(`/${PROJECT}-exporter`)"
- "traefik.http.services.exporter_${PROJECT}.loadbalancer.server.port=8092"
- "traefik.http.routers.exporter_${PROJECT}.tls=true"
- "traefik.http.middlewares.exporter_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-exporter"
- "traefik.http.routers.exporter_${PROJECT}.middlewares=exporter_${PROJECT}_strip"
- "traefik.http.routers.connector.middlewares=connector_strip,auth-qr"
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volumes:
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- "/var/cache/bridgehead/${PROJECT}/exporter-files:/app/exporter-files/output"
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exporter-db:
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image: docker.verbis.dkfz.de/cache/postgres:${POSTGRES_TAG}
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container_name: bridgehead-${PROJECT}-exporter-db
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environment:
POSTGRES_USER: "exporter"
POSTGRES_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
POSTGRES_DB: "exporter"
volumes:
# Consider removing this volume once we find a solution to save Lens-queries to be executed in the explorer.
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- "/var/cache/bridgehead/${PROJECT}/exporter-db:/var/lib/postgresql/data"
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reporter:
image: docker.verbis.dkfz.de/ccp/dktk-reporter:latest
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container_name: bridgehead-${PROJECT}-reporter
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environment:
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JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
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LOG_LEVEL: "INFO"
CROSS_ORIGINS: "https://${HOST}"
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HTTP_RELATIVE_PATH: "/${PROJECT}-reporter"
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SITE: "${SITE_ID}"
EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
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EXPORTER_URL: "http://exporter:8092"
LOG_FHIR_VALIDATION: "false"
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HTTP_SERVLET_REQUEST_SCHEME: "https"
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# In this initial development state of the bridgehead, we are trying to have so many volumes as possible.
# However, in the first executions in the CCP sites, this volume seems to be very important. A report is
# a process that can take several hours, because it depends on the exporter.
# There is a risk that the bridgehead restarts, losing the already created export.
volumes:
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- "/var/cache/bridgehead/${PROJECT}/reporter-files:/app/reports"
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labels:
- "traefik.enable=true"
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- "traefik.http.routers.reporter_${PROJECT}.rule=PathPrefix(`/${PROJECT}-reporter`)"
- "traefik.http.services.reporter_${PROJECT}.loadbalancer.server.port=8095"
- "traefik.http.routers.reporter_${PROJECT}.tls=true"
- "traefik.http.middlewares.reporter_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-reporter"
- "traefik.http.routers.reporter_${PROJECT}.middlewares=reporter_${PROJECT}_strip"
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traefik:
labels:
- "traefik.http.middlewares.auth-qr.basicauth.users=${QR_AUTH}"