bridgehead/ccp/modules/datashield-compose.yml

version: "3.7"

services:
  ############################################ DataSHIELD Client (Rocker R-Studio)
  rstudio:
    container_name: bridgehead-rstudio
    image: docker.verbis.dkfz.de/ccp/dktk-rstudio:latest
    #TODO: Connect with Keycloak: https://rocker-project.org/images/versioned/rstudio.html
    environment:
      USER: "ruser"
      PASSWORD: "${RSTUDIO_PASSWORD}"
      HTTP_RELATIVE_PATH: "/rstudio"
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.rstudio_ccp.rule=PathPrefix(`/rstudio`)"
      - "traefik.http.services.rstudio_ccp.loadbalancer.server.port=8787"
      - "traefik.http.routers.rstudio_ccp.tls=true"
      - "traefik.http.middlewares.rstudio_ccp_strip.stripprefix.prefixes=/rstudio"
      - "traefik.http.routers.rstudio_ccp.middlewares=rstudio_ccp_strip"
    volumes:
      #- "bridgehead-rstudio-config:/home/rstudio/.config/rstudio"
      - "bridgehead-rstudio-workspace:/home/rstudio/workspace"

  ############################################ DataSHIELD Server (Opal)
  opal:
    container_name: bridgehead-opal
    image: obiba/opal:4.5
    labels:
      - "traefik.enable=true"
#      - "traefik.http.routers.opal_ccp.service=opal_ccp"
      - "traefik.http.routers.opal_ccp.rule=PathPrefix(`/opal`)"
      - "traefik.http.services.opal_ccp.loadbalancer.server.port=8080"
      - "traefik.http.routers.opal_ccp.tls=true"
#      - "traefik.http.routers.opal_ccp.middlewares=opal_ccp_strip"
#      - "traefik.http.middlewares.opal_ccp_strip.stripprefix.prefixes=/opal"

#      - "traefik.http.routers.opal_ccp2.service=opal_ccp"
#      - "traefik.http.routers.opal_ccp2.rule=PathPrefix(`/ws`)"
#      - "traefik.http.routers.opal_ccp2.tls=true"
#      - "traefik.http.routers.opal_ccp2.middlewares=opal_ccp2_strip"
#      - "traefik.http.middlewares.opal_ccp2_strip.stripprefix.prefixes=/ws"
#      - "traefik.http.routers.opal_ccp2.middlewares=opal_ccp2_add"
#      - "traefik.http.middlewares.opal_ccp2_add.addprefix.prefix=/opal/ws"

    links:
      - opal-rserver
      - opal-mongo
      - opal-db
    environment:
      JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
      # OPAL_ADMINISTRATOR_USER: "administrator"
      OPAL_ADMINISTRATOR_PASSWORD: "${OPAL_ADMINISTRATOR_PASSWORD}"
      MONGO_HOST: "opal-mongo"
      MONGO_PORT: "27017"
      POSTGRESDATA_HOST: "opal-db"
      POSTGRESDATA_DATABASE: "opal"
      POSTGRESDATA_USER: "opal"
      POSTGRESDATA_PASSWORD: "${OPAL_DB_PASSWORD}"
      ROCK_HOSTS: "opal-rserver:8085"
#      APP_URL: "https://${HOST}/opal"
#      APP_CONTEXT_PATH: "/opal"

#    volumes:
#      - "bridgehead-opal:/srv"

  opal-mongo: # IDs
    container_name: bridgehead-opal-mongo
    image: mongo:4.2 # TODO: Update mongo:6.0.4

  opal-db: # Data
    container_name: bridgehead-opal-db
    image: postgres:15.1-alpine
    environment:
      POSTGRES_PASSWORD: "${OPAL_DB_PASSWORD}"
      POSTGRES_USER: "opal"
      POSTGRES_DB: "opal"
    volumes:
      - "bridgehead-opal-db:/var/lib/postgresql/data"

  opal-rserver:
    container_name: bridgehead-opal-rserver
    image: datashield/rock-base:6.2-R4.2  # https://datashield.discourse.group/t/ds-aggregate-method-error/416/4

  beam-connect:
    image: docker.verbis.dkfz.de/cache/samply/beam-connect:develop
    container_name: bridgehead-datashield-connect
    ports:
      - 8062:8062
    environment:
      PROXY_URL: "http://beam-proxy:8081"
      APP_ID: datashield-connect.${SITE_ID}.${BROKER_ID}
      PROXY_APIKEY: ${DATASHIELD_CONNECT_SECRET}
      DISCOVERY_URL: "./map/central.json"
      LOCAL_TARGETS_FILE: "./map/local.json"
    depends_on:
      - "beam-proxy"
    volumes:
      - /etc/bridgehead/datashield-connect/:/map:ro

  beam-proxy:
    environment:
      APP_2_ID: datashield-connect
      APP_2_KEY: ${DATASHIELD_CONNECT_SECRET}

volumes:
#  bridgehead-rstudio-config:
#    name: "bridgehead-rstudio-config"
  bridgehead-rstudio-workspace:
    name: "bridgehead-rstudio-workspace"
  bridgehead-opal-db:
    name: "bridgehead-opal-db"
  bridgehead-opal:
    name: "bridgehead-opal"