2022-12-02 15:38:33 +01:00
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version: "3.7"
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services:
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mtba:
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2024-01-09 11:32:01 +01:00
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image: docker.verbis.dkfz.de/cache/samply/mtba:1.0.0
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2022-12-02 15:38:33 +01:00
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container_name: bridgehead-mtba
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environment:
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2023-01-27 11:13:49 +01:00
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BLAZE_STORE_URL: http://blaze:8080
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2022-12-02 15:38:33 +01:00
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# NOTE: Aktuell Berechtigungen wie MagicPL!!!
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2022-12-16 15:01:04 +01:00
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# TODO: Add separate ApiKey to MagicPL only for MTBA!
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ID_MANAGER_API_KEY: ${IDMANAGER_UPLOAD_APIKEY}
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2022-12-02 15:38:33 +01:00
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ID_MANAGER_PSEUDONYM_ID_TYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID
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2023-01-27 11:13:49 +01:00
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ID_MANAGER_URL: http://id-manager:8080/id-manager
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PATIENT_CSV_FIRST_NAME_HEADER: ${MTBA_PATIENT_CSV_FIRST_NAME_HEADER}
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PATIENT_CSV_LAST_NAME_HEADER: ${MTBA_PATIENT_CSV_LAST_NAME_HEADER}
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PATIENT_CSV_GENDER_HEADER: ${MTBA_PATIENT_CSV_GENDER_HEADER}
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PATIENT_CSV_BIRTHDAY_HEADER: ${MTBA_PATIENT_CSV_BIRTHDAY_HEADER}
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CBIOPORTAL_URL: http://cbioportal:8080
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FILE_CHARSET: ${MTBA_FILE_CHARSET}
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FILE_END_OF_LINE: ${MTBA_FILE_END_OF_LINE}
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CSV_DELIMITER: ${MTBA_CSV_DELIMITER}
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2023-03-15 15:43:14 +01:00
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# labels:
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# - "traefik.enable=true"
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# - "traefik.http.routers.mtba.rule=PathPrefix(`/mtba`)"
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# - "traefik.http.services.mtba.loadbalancer.server.port=80"
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# - "traefik.http.routers.mtba.tls=true"
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2022-12-02 15:38:33 +01:00
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volumes:
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2023-01-18 13:42:36 +01:00
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- /tmp/bridgehead/mtba/input:/app/input
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- /tmp/bridgehead/mtba/persist:/app/persist
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2022-12-02 15:38:33 +01:00
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# TODO: Include CBioPortal in Deployment ...
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# NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted!
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# TODO: Find a trigger to let mtba signal a restart for CBioPortal
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