mirror of
https://github.com/samply/bridgehead.git
synced 2025-11-04 15:20:17 +01:00
feat: add pscc - fix rebase issues
This commit is contained in:
p.delpy@dkfz-heidelberg.de
committed by
Pierre Delpy
Pierre Delpy
parent
8a35785a24
commit
0bbc73e1ba
@@ -35,6 +35,9 @@ case "$PROJECT" in
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cce)
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#nothing extra to do
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;;
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pscc)
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#nothing extra to do
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;;
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itcc)
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#nothing extra to do
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;;
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@@ -55,6 +55,9 @@ case "$PROJECT" in
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cce)
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site_configuration_repository_middle="git.verbis.dkfz.de/cce-sites/"
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;;
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pscc)
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site_configuration_repository_middle="git.verbis.dkfz.de/pscc-sites/"
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;;
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itcc)
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site_configuration_repository_middle="git.verbis.dkfz.de/itcc-sites/"
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;;
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@@ -59,3 +59,4 @@ services:
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PROJECT: ${PROJECT}
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SITE_NAME: ${SITE_NAME}
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ENVIRONMENT: ${ENVIRONMENT}
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profiles: [deactivated]
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65
pscc/docker-compose.yml
Normal file
65
pscc/docker-compose.yml
Normal file
@@ -0,0 +1,65 @@
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version: "3.7"
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services:
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blaze:
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image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
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container_name: bridgehead-pscc-blaze
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environment:
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BASE_URL: "http://bridgehead-pscc-blaze:8080"
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JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
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DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
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DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
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CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
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ENFORCE_REFERENTIAL_INTEGRITY: "false"
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volumes:
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- "blaze-data:/app/data"
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labels:
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- "traefik.enable=true"
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- "traefik.http.routers.blaze_pscc.rule=PathPrefix(`/pscc-localdatamanagement`)"
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- "traefik.http.middlewares.pscc_b_strip.stripprefix.prefixes=/pscc-localdatamanagement"
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- "traefik.http.services.blaze_pscc.loadbalancer.server.port=8080"
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- "traefik.http.routers.blaze_pscc.middlewares=pscc_b_strip,auth"
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- "traefik.http.routers.blaze_pscc.tls=true"
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focus:
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image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}
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container_name: bridgehead-focus
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environment:
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API_KEY: ${FOCUS_BEAM_SECRET_SHORT}
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BEAM_APP_ID_LONG: focus.${PROXY_ID}
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PROXY_ID: ${PROXY_ID}
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BLAZE_URL: "http://bridgehead-pscc-blaze:8080/fhir/"
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BEAM_PROXY_URL: http://beam-proxy:8081
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RETRY_COUNT: ${FOCUS_RETRY_COUNT}
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EPSILON: 0.28
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ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
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depends_on:
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- "beam-proxy"
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- "blaze"
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beam-proxy:
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image: docker.verbis.dkfz.de/cache/samply/beam-proxy:${BEAM_TAG}
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container_name: bridgehead-beam-proxy
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environment:
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BROKER_URL: ${BROKER_URL}
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PROXY_ID: ${PROXY_ID}
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APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT}
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PRIVKEY_FILE: /run/secrets/proxy.pem
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ALL_PROXY: http://forward_proxy:3128
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TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
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ROOTCERT_FILE: /conf/root.crt.pem
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secrets:
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- proxy.pem
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depends_on:
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- "forward_proxy"
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volumes:
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- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
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- /srv/docker/bridgehead/pscc/root.crt.pem:/conf/root.crt.pem:ro
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volumes:
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blaze-data:
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secrets:
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proxy.pem:
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file: /etc/bridgehead/pki/${SITE_ID}.priv.pem
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34
pscc/modules/lens-compose.yml
Normal file
34
pscc/modules/lens-compose.yml
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@@ -0,0 +1,34 @@
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version: "3.7"
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services:
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landing:
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container_name: lens_federated-search
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image: docker.verbis.dkfz.de/dashboard/pscc-explorer
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labels:
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- "traefik.enable=true"
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- "traefik.http.routers.landing.rule=PathPrefix(`/`)"
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- "traefik.http.services.landing.loadbalancer.server.port=5173"
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- "traefik.http.routers.landing.middlewares=auth"
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- "traefik.http.routers.landing.tls=true"
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# spot:
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# image: docker.verbis.dkfz.de/ccp-private/central-spot
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# environment:
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# BEAM_SECRET: "${FOCUS_BEAM_SECRET_SHORT}"
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# BEAM_URL: http://beam-proxy:8081
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# BEAM_PROXY_ID: ${SITE_ID}
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# BEAM_BROKER_ID: ${BROKER_ID}
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# BEAM_APP_ID: "focus"
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# PROJECT_METADATA: "cce_supervisors"
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# depends_on:
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# - "beam-proxy"
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# labels:
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# - "traefik.enable=true"
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# - "traefik.http.services.spot.loadbalancer.server.port=8080"
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# - "traefik.http.middlewares.corsheaders2.headers.accesscontrolallowmethods=GET,OPTIONS,POST"
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# - "traefik.http.middlewares.corsheaders2.headers.accesscontrolalloworiginlist=https://${HOST}"
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# - "traefik.http.middlewares.corsheaders2.headers.accesscontrolallowcredentials=true"
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# - "traefik.http.middlewares.corsheaders2.headers.accesscontrolmaxage=-1"
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# - "traefik.http.routers.spot.rule=Host(`${HOST}`) && PathPrefix(`/backend`)"
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# - "traefik.http.middlewares.stripprefix_spot.stripprefix.prefixes=/backend"
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# - "traefik.http.routers.spot.tls=true"
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# - "traefik.http.routers.spot.middlewares=corsheaders2,stripprefix_spot"
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5
pscc/modules/lens-setup.sh
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5
pscc/modules/lens-setup.sh
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@@ -0,0 +1,5 @@
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#!/bin/bash
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if [ -n "$ENABLE_LENS" ];then
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OVERRIDE+=" -f ./$PROJECT/modules/lens-compose.yml"
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fi
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20
pscc/root.crt.pem
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20
pscc/root.crt.pem
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@@ -0,0 +1,20 @@
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-----BEGIN CERTIFICATE-----
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MIIDNTCCAh2gAwIBAgIUW34NEb7bl0+Ywx+I1VKtY5vpAOowDQYJKoZIhvcNAQEL
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BQAwFjEUMBIGA1UEAxMLQnJva2VyLVJvb3QwHhcNMjQwMTIyMTMzNzEzWhcNMzQw
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MTE5MTMzNzQzWjAWMRQwEgYDVQQDEwtCcm9rZXItUm9vdDCCASIwDQYJKoZIhvcN
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AQEBBQADggEPADCCAQoCggEBAL5UegLXTlq3XRRj8LyFs3aF0tpRPVoW9RXp5kFI
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TnBvyO6qjNbMDT/xK+4iDtEX4QQUvsxAKxfXbe9i1jpdwjgH7JHaSGm2IjAiKLqO
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OXQQtguWwfNmmp96Ql13ArLj458YH08xMO/w2NFWGwB/hfARa4z/T0afFuc/tKJf
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XbGCG9xzJ9tmcG45QN8NChGhVvaTweNdVxGWlpHxmi0Mn8OM9CEuB7nPtTTiBuiu
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pRC2zVVmNjVp4ktkAqL7IHOz+/F5nhiz6tOika9oD3376Xj055lPznLcTQn2+4d7
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K7ZrBopCFxIQPjkgmYRLfPejbpdUjK1UVJw7hbWkqWqH7JMCAwEAAaN7MHkwDgYD
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VR0PAQH/BAQDAgEGMA8GA1UdEwEB/wQFMAMBAf8wHQYDVR0OBBYEFGjvRcaIP4HM
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poIguUAK9YL2n7fbMB8GA1UdIwQYMBaAFGjvRcaIP4HMpoIguUAK9YL2n7fbMBYG
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A1UdEQQPMA2CC0Jyb2tlci1Sb290MA0GCSqGSIb3DQEBCwUAA4IBAQCbzycJSaDm
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AXXNJqQ88djrKs5MDXS8RIjS/cu2ayuLaYDe+BzVmUXNA0Vt9nZGdaz63SLLcjpU
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fNSxBfKbwmf7s30AK8Cnfj9q4W/BlBeVizUHQsg1+RQpDIdMrRQrwkXv8mfLw+w5
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3oaXNW6W/8KpBp/H8TBZ6myl6jCbeR3T8EMXBwipMGop/1zkbF01i98Xpqmhx2+l
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n+80ofPsSspOo5XmgCZym8CD/m/oFHmjcvOfpOCvDh4PZ+i37pmbSlCYoMpla3u/
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7MJMP5lugfLBYNDN2p+V4KbHP/cApCDT5UWLOeAWjgiZQtHH5ilDeYqEc1oPjyJt
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Rtup0MTxSJtN
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-----END CERTIFICATE-----
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14
pscc/vars
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14
pscc/vars
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@@ -0,0 +1,14 @@
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BROKER_ID=test-no-real-data.broker.samply.de
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BROKER_URL=https://${BROKER_ID}
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PROXY_ID=${SITE_ID}.${BROKER_ID}
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FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
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FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
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SUPPORT_EMAIL=denis.koether@dkfz-heidelberg.de
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PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
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BROKER_URL_FOR_PREREQ=$BROKER_URL
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for module in $PROJECT/modules/*.sh
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do
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log DEBUG "sourcing $module"
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source $module
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done
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