samply/bridgehead
1
0
Fork 0
mirror of https://github.com/samply/bridgehead.git synced 2026-09-02 15:20:22 +02:00
Code Issues Packages Projects Releases Wiki Activity

itcc: add omics ui (#396)

Browse Source
This commit is contained in:
Jan
2026-08-17 09:34:43 +02:00
committed by GitHub
parent 1b4a290216
commit 172b5544ef
1 changed files with 18 additions and 2 deletions
Download Patch File Download Diff File Expand all files Collapse all files
itcc/modules/itcc-omics-ingest.yaml
+18 -2
View File
@@ -1,22 +1,37 @@
services: services:
omics-endpoint: omics-endpoint:
image: samply/itcc-omics-ingest:main image: samply/itcc-omics-ingest:develop
environment: environment:
API_KEY: ${GENERATE_API_KEY} API_KEY: ${GENERATE_API_KEY}
API_PORT: "6080"
BEAM_APP_ID_LONG: omics-endpoint.${PROXY_ID} BEAM_APP_ID_LONG: omics-endpoint.${PROXY_ID}
BEAM_SECRET: ${FOCUS_BEAM_SECRET_SHORT} BEAM_SECRET: ${FOCUS_BEAM_SECRET_SHORT}
BEAM_URL: http://beam-proxy:8081
BLAZE_URL: http://bridgehead-itcc-blaze:8080/fhir/
BOX_ROOT: /var/lib/itcc-maf-box
DWH_SOCKET_ID: ${DWH_SOCKET_ID} DWH_SOCKET_ID: ${DWH_SOCKET_ID}
DWH_TASK_ID: ${DWH_TASK_ID} DWH_TASK_ID: ${DWH_TASK_ID}
PARTNER_ID: ${SITE_ID} SITE_ID: ${SITE_ID}
ML_API_KEY: ${GENERATE_API_KEY} ML_API_KEY: ${GENERATE_API_KEY}
ML_URL: http://bridgehead-patientlist:8080
UI_PORT: "3000"
volumes:
- "omics-maf-box:/var/lib/itcc-maf-box"
labels: labels:
- "traefik.http.routers.omics.rule=Host(`${HOST}`) && - "traefik.http.routers.omics.rule=Host(`${HOST}`) &&
PathPrefix(`/api/upload`)" PathPrefix(`/api/upload`)"
- "traefik.enable=true" - "traefik.enable=true"
- "traefik.http.services.omics.loadbalancer.server.port=6080" - "traefik.http.services.omics.loadbalancer.server.port=6080"
- "traefik.http.routers.omics.service=omics"
- "traefik.http.routers.omics.tls=true" - "traefik.http.routers.omics.tls=true"
- "traefik.http.middlewares.omics-stripprefix.stripprefix.prefixes=/api" - "traefik.http.middlewares.omics-stripprefix.stripprefix.prefixes=/api"
- "traefik.http.routers.omics.middlewares=omics-stripprefix" - "traefik.http.routers.omics.middlewares=omics-stripprefix"
- "traefik.http.routers.itcc-uploader.rule=Host(`${HOST}`) && PathPrefix(`/itcc-uploader`)"
- "traefik.http.routers.itcc-uploader.service=itcc-uploader"
- "traefik.http.routers.itcc-uploader.tls=true"
- "traefik.http.services.itcc-uploader.loadbalancer.server.port=3000"
- "traefik.http.middlewares.itcc-uploader-stripprefix.stripprefix.prefixes=/itcc-uploader"
- "traefik.http.routers.itcc-uploader.middlewares=auth,itcc-uploader-stripprefix"
patientlist-db: patientlist-db:
image: postgres:${POSTGRES_TAG} image: postgres:${POSTGRES_TAG}
@@ -60,6 +75,7 @@ services:
target: /etc/resources/keys/symmetric_key.json target: /etc/resources/keys/symmetric_key.json
volumes: volumes:
omics-maf-box:
patientlist-db-data: patientlist-db-data:
secrets: secrets:
mainzelliste.docker.conf: mainzelliste.docker.conf: