diff --git a/c4/docker-compose.yml b/c4/docker-compose.yml index 31ad1f0..52d389c 100644 --- a/c4/docker-compose.yml +++ b/c4/docker-compose.yml @@ -1,12 +1,12 @@ version: "3.7" volumes: - connector_db_data: - connector_logs: - patientlist_db_data: - patientlist_logs: - idmanager_logs: - store_db_data: - store_logs: + c4-connector-db-data: + c4-connector-logs: + patientlist-db-data: + patientlist-logs: + id-manager-logs: + c4-store-db-data: + c4-store-logs: services: traefik: @@ -17,11 +17,6 @@ services: - --entrypoints.web.address=:80 - --entrypoints.web-secure.address=:443 - --providers.docker=true - environment: - http_proxy: "" - HTTP_PROXY: "" - https_proxy: "" - HTTPS_PROXY: "" ports: - 80:80 - 443:443 @@ -39,39 +34,48 @@ services: - "traefik.http.routers.landing.rule=PathPrefix(`/`)" - "traefik.http.services.landing.loadbalancer.server.port=80" - connector: - container_name: c4-connector + c4-connector: image: "samply/share-client:c4-feature-environmentPreconfigurationTorben" environment: - STORE_URL: http://store:8080 - LDM_URL: http://store:8080 + POSTGRES_HOST: "c4-connector-db" + ID_MANAGER_APIKEY: ${MAGICPL_API_KEY_CONNECTOR} POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASS} + HTTP_PROXY_USER: ${HTTP_PROXY_USER} + HTTP_PROXY_PASSWORD: ${HTTP_PROXY_PASSWORD} + HTTPS_PROXY_USER: ${HTTPS_PROXY_USER} + HTTPS_PROXY_PASSWORD: ${HTTPS_PROXY_PASSWORD} + LDM_URL: "${PROTOCOL}://${HOST}/c4-localdatamanagement" + POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASS} + env_file: + - ../site-config/c4.env + # Necessary for the connector to successful check the status of other components on the same host + extra_hosts: + - "host.docker.internal:host-gateway" + - "${HOST}:${HOSTIP}" volumes: - - "connector_logs:/usr/local/tomcat/logs" + - "c4-connector-logs:/usr/local/tomcat/logs" + depends_on: + - connector-db + restart: always labels: - "traefik.enable=true" - "traefik.http.routers.c4_connector.rule=PathPrefix(`/c4-connector`)" - "traefik.http.services.c4_connector.loadbalancer.server.port=8080" - depends_on: - - connector-db - restart: always - connector-db: - container_name: connector-db + c4-connector-db: image: postgres:10.17 environment: POSTGRES_DB: "share_v2" POSTGRES_USER: "samplyweb" POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASS} volumes: - - "connector_db_data:/var/lib/postgresql/data" + - "c4-connector-db-data:/var/lib/postgresql/data" restart: always - idmanager: - container_name: idmanager + id-manager: + container_name: id-manager image: docker.verbis.dkfz.de/ccp/idmanager:bridgehead-develop environment: - TOMCAT_REVERSEPROXY_FQDN: ${HOST} MAGICPL_SITE: ${SITE} MAGICPL_MAINZELLISTE_API_KEY: ${MAGICPL_MAINZELLISTE_API_KEY} MAGICPL_API_KEY: ${MAGICPL_API_KEY} @@ -80,8 +84,15 @@ services: MAGICPL_CENTRAL_API_KEY: ${MAGICPL_CENTRAL_API_KEY} MAGICPL_OIDC_CLIENT_ID: ${MAGICPL_OIDC_CLIENT_ID} MAGICPL_OIDC_CLIENT_SECRET: ${MAGICPL_OIDC_CLIENT_SECRET} + TOMCAT_REVERSEPROXY_FQDN: "${HOST}" + HTTP_PROXY_USER: ${HTTP_PROXY_USER} + HTTP_PROXY_PASSWORD: ${HTTP_PROXY_PASSWORD} + HTTPS_PROXY_USER: ${HTTPS_PROXY_USER} + HTTPS_PROXY_PASSWORD: ${HTTPS_PROXY_PASSWORD} + env_file: + - ../site-config/dktk.env volumes: - - "idmanager_logs:/usr/local/tomcat/logs" + - "id-manager-logs:/usr/local/tomcat/logs" depends_on: - patientlist labels: @@ -93,13 +104,15 @@ services: image: docker.verbis.dkfz.de/ccp/patientlist:bridgehead-develop environment: ML_SITE: ${SITE} - ML_API_KEY: ${ML_API_KEY} - TOMCAT_REVERSEPROXY_FQDN: ${HOST} + ML_API_KEY: ${MAGICPL_MAINZELLISTE_API_KEY} + ML_DB_PASS: ${ML_DB_PASS} + TOMCAT_REVERSEPROXY_FQDN: "${HOST}" env_file: + - ../site-config/dktk.env # TODO: Implement automatic seed generation in mainzelliste - ../site-config/patientlist.env volumes: - - "patientlist_logs:/usr/local/tomcat/logs" + - "patientlist-logs:/usr/local/tomcat/logs" labels: - "traefik.http.routers.patientlist.rule=PathPrefix(`/Patientlist`)" - "traefik.http.services.patientlist.loadbalancer.server.port=8080" @@ -115,43 +128,37 @@ services: POSTGRES_PASSWORD: ${ML_DB_PASS} TZ: "Europe/Berlin" volumes: - - "patientlist_db_data:/var/lib/postgresql/data" + - "patientlist-db-data:/var/lib/postgresql/data" - store: - container_name: bridgehead_c4_store + c4-store: image: docker.verbis.dkfz.de/ccp/samply.store:release-5.1.2 environment: - POSTGRES_HOST: bridgehead_c4_store_db + MDR_NAMESPACE: "adt,dktk,marker" + MDR_VALIDATION: false + DEPLOYMENT_CONTEXT: "c4-localdatamanagement" + POSTGRES_HOST: c4-store-db POSTGRES_PORT: 5432 POSTGRES_DB: samplystore POSTGRES_USER: samplystore - POSTGRES_PASSWORD: samplystore - TZ: Europe/Berlin + POSTGRES_PASSWORD: ${STORE_POSTGRES_PASS} + TZ: "Europe/Berlin" volumes: - - "store_logs:/usr/local/tomcat/logs" + - "c4-store-logs:/usr/local/tomcat/logs" labels: - "traefik.enable=true" - - "traefik.http.routers.store_c4.rule=PathPrefix(`/c4-loc\ - aldatamanagement`)" + - "traefik.http.routers.store_c4.rule=PathPrefix(`/c4-localdatamanagement`)" depends_on: - - store_db + - store-db restart: always - env_file: - ###TODO: Move into Image - - internal.env - store_db: - container_name: bridgehead_c4_store_db + c4-store-db: image: postgres:9.5-alpine command: postgres -c datestyle='iso, dmy' environment: - POSTGRES_PORT: 5432 + TZ: "Europe/Berlin" POSTGRES_DB: samplystore POSTGRES_USER: samplystore - POSTGRES_PASSWORD: samplystore + POSTGRES_PASSWORD: ${STORE_POSTGRES_PASS} volumes: - - "store_db_data:/var/lib/postgresql/data" + - "c4-store-db-data:/var/lib/postgresql/data" restart: always - env_file: - ###TODO: Move into Image - - internal.env diff --git a/dktk/docker-compose.yml b/dktk/docker-compose.yml index 21e96c9..df297b7 100644 --- a/dktk/docker-compose.yml +++ b/dktk/docker-compose.yml @@ -1,12 +1,10 @@ version: "3.7" volumes: - connector_db_data: - connector_logs: - patientlist_db_data: - patientlist_logs: - idmanager_logs: - store_db_data: - store_logs: + dktk-connector-db-data: + dktk-connector-logs: + patientlist-db-data: + patientlist-logs: + id-manager-logs: services: traefik: @@ -34,9 +32,10 @@ services: - "traefik.http.routers.landing.rule=PathPrefix(`/`)" - "traefik.http.services.landing.loadbalancer.server.port=80" - connector: + dktk-connector: image: "samply/share-client:dktk-feature-environmentPreconfigurationTorben" environment: + POSTGRES_HOST: "dktk-connector-db" ID_MANAGER_APIKEY: ${MAGICPL_API_KEY_CONNECTOR} POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASS} HTTP_PROXY_USER: ${HTTP_PROXY_USER} @@ -50,7 +49,7 @@ services: - "host.docker.internal:host-gateway" - "${HOST}:${HOSTIP}" volumes: - - "connector_logs:/usr/local/tomcat/logs" + - "dktk-connector-logs:/usr/local/tomcat/logs" depends_on: - connector-db restart: always @@ -59,14 +58,14 @@ services: - "traefik.http.routers.dktk_connector.rule=PathPrefix(`/dktk-connector`)" - "traefik.http.services.dktk_connector.loadbalancer.server.port=8080" - connector-db: + dktk-connector-db: image: postgres:10.17 environment: POSTGRES_DB: "share_v2" POSTGRES_USER: "samplyweb" POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASS} volumes: - - "connector_db_data:/var/lib/postgresql/data" + - "dktk-connector-db-data:/var/lib/postgresql/data" restart: always id-manager: @@ -81,7 +80,7 @@ services: MAGICPL_CENTRAL_API_KEY: ${MAGICPL_CENTRAL_API_KEY} MAGICPL_OIDC_CLIENT_ID: ${MAGICPL_OIDC_CLIENT_ID} MAGICPL_OIDC_CLIENT_SECRET: ${MAGICPL_OIDC_CLIENT_SECRET} - TOMCAT_REVERSEPROXY_FQDN: "${PROTOCOL}://${HOST}:${PORT}" + TOMCAT_REVERSEPROXY_FQDN: "${HOST}" HTTP_PROXY_USER: ${HTTP_PROXY_USER} HTTP_PROXY_PASSWORD: ${HTTP_PROXY_PASSWORD} HTTPS_PROXY_USER: ${HTTPS_PROXY_USER} @@ -89,7 +88,7 @@ services: env_file: - ../site-config/dktk.env volumes: - - "idmanager_logs:/usr/local/tomcat/logs" + - "id-manager-logs:/usr/local/tomcat/logs" depends_on: - patientlist labels: @@ -103,13 +102,13 @@ services: ML_SITE: ${SITE} ML_API_KEY: ${MAGICPL_MAINZELLISTE_API_KEY} ML_DB_PASS: ${ML_DB_PASS} - TOMCAT_REVERSEPROXY_FQDN: "${PROTOCOL}://${HOST}:${PORT}" + TOMCAT_REVERSEPROXY_FQDN: "${HOST}" env_file: - ../site-config/dktk.env # TODO: Implement automatic seed generation in mainzelliste - ../site-config/patientlist.env volumes: - - "patientlist_logs:/usr/local/tomcat/logs" + - "patientlist-logs:/usr/local/tomcat/logs" labels: - "traefik.http.routers.patientlist.rule=PathPrefix(`/Patientlist`)" - "traefik.http.services.patientlist.loadbalancer.server.port=8080" @@ -125,4 +124,4 @@ services: POSTGRES_PASSWORD: ${ML_DB_PASS} TZ: "Europe/Berlin" volumes: - - "patientlist_db_data:/var/lib/postgresql/data" + - "patientlist-db-data:/var/lib/postgresql/data" diff --git a/gbn/docker-compose.yml b/gbn/docker-compose.yml index ce56861..5809ae7 100644 --- a/gbn/docker-compose.yml +++ b/gbn/docker-compose.yml @@ -1,10 +1,9 @@ version: '3.4' volumes: - store-db-data: - name: "store-db-data" - connector-db-data: - name: "connector-db-data" + gbn-connector-logs: + gbn-connector-db-data: + gbn-store-db-data: services: traefik: @@ -15,11 +14,6 @@ services: - --entrypoints.web.address=:80 - --entrypoints.web-secure.address=:443 - --providers.docker=true - environment: - http_proxy: "" - HTTP_PROXY: "" - https_proxy: "" - HTTPS_PROXY: "" ports: - 80:80 - 443:443 @@ -37,14 +31,51 @@ services: - "traefik.http.routers.landing.rule=PathPrefix(`/`)" - "traefik.http.services.landing.loadbalancer.server.port=80" - store: - container_name: "bridgehead_gbn_blaze_store" + gbn-connector: + image: "samply/share-client:gbn-feature-environmentPreconfigurationTorben" + environment: + POSTGRES_HOST: "gbn-connector-db" + ID_MANAGER_APIKEY: ${MAGICPL_API_KEY_CONNECTOR} + POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASS} + HTTP_PROXY_USER: ${HTTP_PROXY_USER} + HTTP_PROXY_PASSWORD: ${HTTP_PROXY_PASSWORD} + HTTPS_PROXY_USER: ${HTTPS_PROXY_USER} + HTTPS_PROXY_PASSWORD: ${HTTPS_PROXY_PASSWORD} + LDM_URL: "${PROTOCOL}://${HOST}:${PORT}/fhir" + env_file: + - ../site-config/gbn.env + extra_hosts: + - "host.docker.internal:host-gateway" + - "${HOST}:${HOSTIP}" + volumes: + - "gbn-connector-logs:/usr/local/tomcat/logs" + labels: + - "traefik.enable=true" + - "traefik.http.routers.gbn_connector.rule=PathPrefix(`/gbn-connector`)" + - "traefik.http.services.gbn_connector.loadbalancer.server.port=8080" + depends_on: + - "gbn-connector-db" + restart: "always" + + gbn-connector-db: + image: "postgres:10.17" + environment: + POSTGRES_DB: "samply.connector" + POSTGRES_USER: "samply" + POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASS} + volumes: + - "gbn-connector-db-data:/var/lib/postgresql/data" + restart: "always" + + gbn-store: image: "samply/blaze:0.15" environment: - BASE_URL: "http://bridgehead_gbn_blaze_store:8080" + BASE_URL: "${PROTOCOL}://${HOST}:${PORT}" JAVA_TOOL_OPTIONS: "-Xmx4g" + env_file: + - ../site-config/gbn.env volumes: - - "store-db-data:/app/data" + - "gbn-store-db-data:/app/data" labels: - "traefik.enable=true" - "traefik.http.middlewares.test-auth.basicauth.users=user:$$apr1$$RjhTX8\ @@ -54,35 +85,3 @@ services: - "traefik.http.services.blaze_gbn.loadbalancer.server.port=8080" - "traefik.http.routers.blaze_gbn.middlewares=gbn_b_strip,test-auth" restart: "always" - - connector: - container_name: connector - image: "samply/share-client:gbn-feature-environmentPreconfigurationTorben" - environment: - POSTGRES_HOST: "bridgehead_gbn_connector_db" - POSTGRES_PASS: ${CONNECTOR_POSTGRES_PASS} - POSTGRES_PORT: 5432 - STORE_URL: "http://bridgehead_gbn_blaze_store:8080/fhir" - env_file: - ###TODO: Move into Image - - internal.env - labels: - - "traefik.enable=true" - - "traefik.http.routers.gbn_connector.rule=PathPrefix(`/gbn-connector`)" - - "traefik.http.services.gbn_connector.loadbalancer.server.port=8080" - depends_on: - - "connector-db" - restart: "always" - - connector-db: - container_name: "bridgehead_gbn_connector_db" - image: "postgres:10.17" - environment: - POSTGRES_PASSWORD: ${CONNECTOR_POSTGRES_PASS} - POSTGRES_PORT: 5432 - volumes: - - "connector-db-data:/var/lib/postgresql/data" - restart: "always" - env_file: - ###TODO: Move into Image - - internal.env diff --git a/init-dev-environment.sh b/init-dev-environment.sh index 13385b7..78113d3 100755 --- a/init-dev-environment.sh +++ b/init-dev-environment.sh @@ -19,6 +19,11 @@ export HTTPS_PROXY_PASSWORD="" # the password of database connector-db export CONNECTOR_POSTGRES_PASS=pleaseChangeThis1 + +### Configuration for Samply Store Secrets +# the password of database connector-db +export STORE_POSTGRES_PASS=pleaseChangeThis6 + ### Configuration for ID-Management Secrets # the password of database patientlist-db export ML_DB_PASS=pleaseChangeThis2