Modularize DNPM components

bbmri/docker-compose.yml

@@ -1,58 +1,6 @@
 version: "3.7"
 
 services:
-  traefik:
-    container_name: bridgehead-traefik
-    image: docker.verbis.dkfz.de/cache/traefik:latest
-    command:
-      - --entrypoints.web.address=:80
-      - --entrypoints.websecure.address=:443
-      - --providers.docker=true
-      - --providers.docker.exposedbydefault=false
-      - --providers.file.directory=/configuration/
-      - --api.dashboard=true
-      - --accesslog=true
-      - --entrypoints.web.http.redirections.entrypoint.to=websecure
-      - --entrypoints.web.http.redirections.entrypoint.scheme=https
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.dashboard.rule=PathPrefix(`/api`) || PathPrefix(`/dashboard`)"
-      - "traefik.http.routers.dashboard.entrypoints=websecure"
-      - "traefik.http.routers.dashboard.service=api@internal"
-      - "traefik.http.routers.dashboard.tls=true"
-      - "traefik.http.routers.dashboard.middlewares=auth"
-      - "traefik.http.middlewares.auth.basicauth.users=${LDM_LOGIN}"
-    ports:
-      - 80:80
-      - 443:443
-    volumes:
-      - /etc/bridgehead/traefik-tls:/certs:ro
-      - ../lib/traefik-configuration/:/configuration:ro
-      - /var/run/docker.sock:/var/run/docker.sock:ro
-
-  forward_proxy:
-    container_name: bridgehead-forward-proxy
-    image: docker.verbis.dkfz.de/cache/samply/bridgehead-forward-proxy:latest
-    environment:
-      HTTPS_PROXY: ${HTTPS_PROXY_URL}
-      USERNAME: ${HTTPS_PROXY_USERNAME}
-      PASSWORD: ${HTTPS_PROXY_PASSWORD}
-    volumes:
-      - /etc/bridgehead/trusted-ca-certs:/docker/custom-certs/:ro
-
-  landing:
-    container_name: bridgehead-landingpage
-    image: docker.verbis.dkfz.de/cache/samply/bridgehead-landingpage:master
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.landing.rule=PathPrefix(`/`)"
-      - "traefik.http.services.landing.loadbalancer.server.port=80"
-      - "traefik.http.routers.landing.tls=true"
-    environment:
-      HOST: ${HOST}
-      PROJECT: ${PROJECT}
-      SITE_NAME: ${SITE_NAME}
-
   blaze:
     image: docker.verbis.dkfz.de/cache/samply/blaze:0.19
     container_name: bridgehead-bbmri-blaze

bbmri/modules/dnpm-compose-beamconnect.yml

@@ -0,0 +1,47 @@
+version: "3.7"
+
+services:
+  dnpm-beam-proxy:
+    image: docker.verbis.dkfz.de/cache/samply/beam-proxy:develop
+    container_name: bridgehead-dnpm-beam-proxy
+    environment:
+      BROKER_URL: ${BROKER_URL}
+      PROXY_ID: ${PROXY_ID}
+      APP_3_ID: dnpm-connect
+      APP_3_KEY: ${DNPM_BEAM_SECRET_SHORT}
+      PRIVKEY_FILE: /run/secrets/proxy.pem
+      ALL_PROXY: http://forward_proxy:3128
+      TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
+      ROOTCERT_FILE: /conf/root.crt.pem
+    secrets:
+      - proxy.pem
+    depends_on:
+      - "forward_proxy"
+    volumes:
+      - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
+      - /srv/docker/bridgehead/ccp/root.crt.pem:/conf/root.crt.pem:ro
+
+  dnpm-beam-connect:
+    depends_on: [ dnpm-beam-proxy ]
+    image: samply/beam-connect:sites-without-auth
+    environment:
+      PROXY_URL: http://dnpm-beam-proxy:8081
+      PROXY_APIKEY: ${DNPM_BEAM_SECRET_SHORT}
+      APP_ID: dnpm-connect.${PROXY_ID}
+      DISCOVERY_URL: ${DNPM_DISCOVERY_URL}
+      LOCAL_TARGETS_FILE: /conf/connect_targets.json
+      HTTP_PROXY: http://forward_proxy:3128
+      HTTPS_PROXY: http://forward_proxy:3128
+      NO_PROXY: dnpm-beam-proxy,dnpm-backend
+      RUST_LOG: ${RUST_LOG:-info}
+    volumes:
+      - /etc/bridgehead/dnpm/local_targets.json:/conf/connect_targets.json:ro
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dnpm-connect.rule=PathPrefix(`/dnpm-connect`)"
+      - "traefik.http.services.dnpm-connect.loadbalancer.server.port=8062"
+      - "traefik.http.routers.dnpm-connect.tls=true"
+
+secrets:
+  proxy.pem:
+    file: /etc/bridgehead/pki/${SITE_ID}.priv.pem

bbmri/modules/dnpm-compose-bwhc.yml

@@ -0,0 +1,54 @@
+version: "3.7"
+
+services:
+  dnpm-frontend:
+    depends_on: [ dnpm-backend ]
+    build:
+      context: ../../dnpm/origin
+      dockerfile: Frontend.Dockerfile
+      network: host
+      args:
+        NUXT_HOST: 0.0.0.0
+        NUXT_PORT: 3000
+        BACKEND_PROTOCOL: ${DNPM_BMHC_BACKEND_PROTOCOL}
+        BACKEND_HOSTNAME: ${DNPM_BWHC_BACKEND_HOSTNAME}
+        BACKEND_PORT: 9000
+        DNPM_BWHC_FRONTEND_ZIP: ${DNPM_BWHC_FRONTEND_ZIP}
+        HTTP_PROXY: ${http_proxy}
+        HTTPS_PROXY: ${https_proxy}
+    environment:
+        BACKEND_PROTOCOL: ${DNPM_BMHC_BACKEND_PROTOCOL}
+        BACKEND_HOSTNAME: ${DNPM_BWHC_BACKEND_HOSTNAME}
+        BACKEND_PORT: 9000
+        no_proxy: dnpm-backend
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dnpm-frontend.rule=PathPrefix(`/dnpm-frontend`)"
+      - "traefik.http.services.dnpm-frontend.loadbalancer.server.port=3000"
+      - "traefik.http.routers.dnpm-frontend.tls=true"
+
+  dnpm-backend:
+    build:
+      context: ../../dnpm/origin
+      dockerfile: Backend.Dockerfile
+      args:
+        BWHC_BASE_DIR: /bwhc-backend
+        DNPM_BWHC_BACKEND_ZIP: ${DNPM_BWHC_BACKEND_ZIP}
+    ports:
+      - 9000:9000
+    environment:
+      APPLICATION_SECRET: ${DNPM_APPLICATION_SECRET}
+      ZPM_SITE: ${ZPM_SITE}
+      noproxy: dnpm-frontend,dnpm-beam-connect
+      # PLAY_HTTP_PORT: 9000
+      # PLAY_HTTP_ADDRESS: 0.0.0.0
+    volumes:
+      - ../dnpm/origin/logback.xml:/bwhc-backend/logback.xml:ro
+      - /etc/bridgehead/dnpm/bwhcConnectorConfig.xml:/bwhc-backend/bwhcConnectorConfig.xml:ro
+      - /etc/bridgehead/dnpm/production.conf:/bwhc-backend/production.conf:ro
+      - bwhc_data:/bwhc-backend/data/
+      - bwhc_hgnc_data:/bwhc-backend/hgnc_data/
+
+volumes:
+  bwhc_data:
+  bwhc_hgnc_data:

bbmri/modules/dnpm-setup.sh

@@ -0,0 +1,17 @@
+#!/bin/bash
+
+if [ -n "${ENABLE_DNPM}" ]; then
+	log INFO "DNPM setup detected (Beam.Connect) -- will start Beam.Connect for DNPM."
+	OVERRIDE+=" -f ./$PROJECT/modules/dnpm-compose-beamconnect.yml"
+
+	# Set variables required for Beam-Connect
+	DNPM_APPLICATION_SECRET="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
+	DNPM_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
+	DNPM_DISCOVERY_URL="https://dnpm.medizin.uni-tuebingen.de/sites"
+
+	# Optionally, start bwhc as well. This is currently only experimental
+	if [ -n "${ENABLE_DNPM_BWHC}" ]; then
+		log INFO "DNPM setup detected (with Frontend/Backend) -- will start BWHC Frontend/Backend. This is highly experimental!"
+		OVERRIDE+=" -f ./$PROJECT/modules/dnpm-compose-bwhc.yml"
+	fi
+fi

bbmri/vars

@@ -5,3 +5,9 @@ FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | h
 FOCUS_RETRY_COUNT=32
 SUPPORT_EMAIL=bridgehead@helpdesk.bbmri-eric.eu
 PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
+
+for module in $PROJECT/modules/*.sh
+do
+    log INFO "sourcing $module"
+    source $module
+done

bridgehead

@@ -32,6 +32,9 @@ case "$PROJECT" in
 	bbmri)
 		#nothing extra to do
 		;;
+	minimal)
+		#nothing extra to do
+		;;
 	*)
 		printUsage
 		exit 1
@@ -51,6 +54,11 @@ loadVars() {
 	set +a
 
 	OVERRIDE=${OVERRIDE:=""}
+	# minimal contains shared components, so potential overrides must be applied in every project
+	if [ -f "minimal/docker-compose.override.yml" ]; then
+		log INFO "Applying minimal/docker-compose.override.yml"
+		OVERRIDE+=" -f ./minimal/docker-compose.override.yml"
+	fi
 	if [ -f "$PROJECT/docker-compose.override.yml" ]; then
 		log INFO "Applying $PROJECT/docker-compose.override.yml"
 		OVERRIDE+=" -f ./$PROJECT/docker-compose.override.yml"
@@ -66,13 +74,13 @@ case "$ACTION" in
 		checkRequirements
 		hc_send log "Bridgehead $PROJECT startup: Requirements checked out. Now starting bridgehead ..."
 		export LDM_LOGIN=$(getLdmPassword)
-		exec $COMPOSE -f ./$PROJECT/docker-compose.yml $OVERRIDE up --abort-on-container-exit
+		exec $COMPOSE -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE up --abort-on-container-exit
 		;;
 	stop)
 		loadVars
 		# HACK: This is tempoarily to properly shut down false bridgehead instances (bridgehead-ccp instead ccp)
-		$COMPOSE -p bridgehead-$PROJECT -f ./$PROJECT/docker-compose.yml $OVERRIDE down
+		$COMPOSE -p bridgehead-$PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE down
-		exec $COMPOSE -f ./$PROJECT/docker-compose.yml $OVERRIDE down
+		exec $COMPOSE -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE down
 		;;
 	is-running)
 		bk_is_running

ccp/docker-compose.yml

@@ -1,58 +1,6 @@
 version: "3.7"
 
 services:
-  traefik:
-    container_name: bridgehead-traefik
-    image: docker.verbis.dkfz.de/cache/traefik:latest
-    command:
-      - --entrypoints.web.address=:80
-      - --entrypoints.websecure.address=:443
-      - --providers.docker=true
-      - --providers.docker.exposedbydefault=false
-      - --providers.file.directory=/configuration/
-      - --api.dashboard=true
-      - --accesslog=true
-      - --entrypoints.web.http.redirections.entrypoint.to=websecure
-      - --entrypoints.web.http.redirections.entrypoint.scheme=https
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.dashboard.rule=PathPrefix(`/api`) || PathPrefix(`/dashboard`)"
-      - "traefik.http.routers.dashboard.entrypoints=websecure"
-      - "traefik.http.routers.dashboard.service=api@internal"
-      - "traefik.http.routers.dashboard.tls=true"
-      - "traefik.http.routers.dashboard.middlewares=auth"
-      - "traefik.http.middlewares.auth.basicauth.users=${LDM_LOGIN}"
-    ports:
-      - 80:80
-      - 443:443
-    volumes:
-      - /etc/bridgehead/traefik-tls:/certs:ro
-      - ../lib/traefik-configuration/:/configuration:ro
-      - /var/run/docker.sock:/var/run/docker.sock:ro
-
-  forward_proxy:
-    container_name: bridgehead-forward-proxy
-    image: docker.verbis.dkfz.de/cache/samply/bridgehead-forward-proxy:latest
-    environment:
-      HTTPS_PROXY: ${HTTPS_PROXY_URL}
-      USERNAME: ${HTTPS_PROXY_USERNAME}
-      PASSWORD: ${HTTPS_PROXY_PASSWORD}
-    volumes:
-      - /etc/bridgehead/trusted-ca-certs:/docker/custom-certs/:ro
-
-  landing:
-    container_name: bridgehead-landingpage
-    image: docker.verbis.dkfz.de/cache/samply/bridgehead-landingpage:master
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.landing.rule=PathPrefix(`/`)"
-      - "traefik.http.services.landing.loadbalancer.server.port=80"
-      - "traefik.http.routers.landing.tls=true"
-    environment:
-      HOST: ${HOST}
-      PROJECT: ${PROJECT}
-      SITE_NAME: ${SITE_NAME}
-
   blaze:
     image: docker.verbis.dkfz.de/cache/samply/blaze:0.19
     container_name: bridgehead-ccp-blaze

ccp/modules/dnpm-compose-beamconnect.yml

@@ -0,0 +1,28 @@
+version: "3.7"
+
+services:
+  beam-proxy:
+    environment:
+      APP_3_ID: dnpm-connect
+      APP_3_KEY: ${DNPM_BEAM_SECRET_SHORT}
+
+  dnpm-beam-connect:
+    depends_on: [ beam-proxy ]
+    image: samply/beam-connect:sites-without-auth
+    environment:
+      PROXY_URL: http://beam-proxy:8081
+      PROXY_APIKEY: ${DNPM_BEAM_SECRET_SHORT}
+      APP_ID: dnpm-connect.${PROXY_ID}
+      DISCOVERY_URL: ${DNPM_DISCOVERY_URL}
+      LOCAL_TARGETS_FILE: /conf/connect_targets.json
+      HTTP_PROXY: http://forward_proxy:3128
+      HTTPS_PROXY: http://forward_proxy:3128
+      NO_PROXY: beam-proxy,dnpm-backend
+      RUST_LOG: ${RUST_LOG:-info}
+    volumes:
+      - /etc/bridgehead/dnpm/local_targets.json:/conf/connect_targets.json:ro
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dnpm-connect.rule=PathPrefix(`/dnpm-connect`)"
+      - "traefik.http.services.dnpm-connect.loadbalancer.server.port=8062"
+      - "traefik.http.routers.dnpm-connect.tls=true"

ccp/modules/dnpm-compose-bwhc.yml

@@ -0,0 +1,54 @@
+version: "3.7"
+
+services:
+  dnpm-frontend:
+    depends_on: [ dnpm-backend ]
+    build:
+      context: ../../dnpm/origin
+      dockerfile: Frontend.Dockerfile
+      network: host
+      args:
+        NUXT_HOST: 0.0.0.0
+        NUXT_PORT: 3000
+        BACKEND_PROTOCOL: ${DNPM_BMHC_BACKEND_PROTOCOL}
+        BACKEND_HOSTNAME: ${DNPM_BWHC_BACKEND_HOSTNAME}
+        BACKEND_PORT: 9000
+        DNPM_BWHC_FRONTEND_ZIP: ${DNPM_BWHC_FRONTEND_ZIP}
+        HTTP_PROXY: ${http_proxy}
+        HTTPS_PROXY: ${https_proxy}
+    environment:
+        BACKEND_PROTOCOL: ${DNPM_BMHC_BACKEND_PROTOCOL}
+        BACKEND_HOSTNAME: ${DNPM_BWHC_BACKEND_HOSTNAME}
+        BACKEND_PORT: 9000
+        no_proxy: dnpm-backend
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dnpm-frontend.rule=PathPrefix(`/dnpm-frontend`)"
+      - "traefik.http.services.dnpm-frontend.loadbalancer.server.port=3000"
+      - "traefik.http.routers.dnpm-frontend.tls=true"
+
+  dnpm-backend:
+    build:
+      context: ../../dnpm/origin
+      dockerfile: Backend.Dockerfile
+      args:
+        BWHC_BASE_DIR: /bwhc-backend
+        DNPM_BWHC_BACKEND_ZIP: ${DNPM_BWHC_BACKEND_ZIP}
+    ports:
+      - 9000:9000
+    environment:
+      APPLICATION_SECRET: ${DNPM_APPLICATION_SECRET}
+      ZPM_SITE: ${ZPM_SITE}
+      noproxy: dnpm-frontend,dnpm-beam-connect
+      # PLAY_HTTP_PORT: 9000
+      # PLAY_HTTP_ADDRESS: 0.0.0.0
+    volumes:
+      - ../dnpm/origin/logback.xml:/bwhc-backend/logback.xml:ro
+      - /etc/bridgehead/dnpm/bwhcConnectorConfig.xml:/bwhc-backend/bwhcConnectorConfig.xml:ro
+      - /etc/bridgehead/dnpm/production.conf:/bwhc-backend/production.conf:ro
+      - bwhc_data:/bwhc-backend/data/
+      - bwhc_hgnc_data:/bwhc-backend/hgnc_data/
+
+volumes:
+  bwhc_data:
+  bwhc_hgnc_data:

ccp/modules/dnpm-setup.sh

@@ -0,0 +1,17 @@
+#!/bin/bash
+
+if [ -n "${ENABLE_DNPM}" ]; then
+	log INFO "DNPM setup detected (Beam.Connect) -- will start Beam.Connect for DNPM."
+	OVERRIDE+=" -f ./$PROJECT/modules/dnpm-compose-beamconnect.yml"
+
+	# Set variables required for Beam-Connect
+	DNPM_APPLICATION_SECRET="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
+	DNPM_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
+	DNPM_DISCOVERY_URL="https://dnpm.medizin.uni-tuebingen.de/sites"
+
+	# Optionally, start bwhc as well. This is currently only experimental
+	if [ -n "${ENABLE_DNPM_BWHC}" ]; then
+		log INFO "DNPM setup detected (with Frontend/Backend) -- will start BWHC Frontend/Backend. This is highly experimental!"
+		OVERRIDE+=" -f ./$PROJECT/modules/dnpm-compose-bwhc.yml"
+	fi
+fi

ccp/vars

@@ -19,6 +19,8 @@ source $PROJECT/exliquid-setup.sh
 exliquidSetup
 mtbaSetup
 
-# This will load DNPM setup. Effective only if DNPM configuration is defined in /etc/bridgehead/dnpm.
+for module in $PROJECT/modules/*.sh
-source dnpm/dnpm-setup.sh
+do
-dnpmSetup
+    log INFO "sourcing $module"
+    source $module
+done

lib/functions.sh

@@ -171,7 +171,7 @@ function retry {
 
 function bk_is_running {
 	detectCompose
-	RUNNING="$($COMPOSE -p $PROJECT -f ./$PROJECT/docker-compose.yml $OVERRIDE ps -q)"
+	RUNNING="$($COMPOSE -p $PROJECT -f minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE ps -q)"
 	NUMBEROFRUNNING=$(echo "$RUNNING" | wc -l)
 	if [ $NUMBEROFRUNNING -ge 2 ]; then
 		return 0

lib/update-bridgehead.sh

@@ -86,7 +86,7 @@ done
 # Check docker updates
 log "INFO" "Checking for updates to running docker images ..."
 docker_updated="false"
-for IMAGE in $(cat $PROJECT/docker-compose.yml ${OVERRIDE//-f/} | grep -v "^#" | grep "image:" | sed -e 's_^.*image: \(.*\).*$_\1_g; s_\"__g'); do
+for IMAGE in $(cat $PROJECT/docker-compose.yml ${OVERRIDE//-f/} minimal/docker-compose.yml | grep -v "^#" | grep "image:" | sed -e 's_^.*image: \(.*\).*$_\1_g; s_\"__g'); do
   log "INFO" "Checking for Updates of Image: $IMAGE"
   if docker pull $IMAGE | grep "Downloaded newer image"; then
     CHANGE="Image $IMAGE updated."

minimal/docker-compose.yml

@@ -0,0 +1,56 @@
+version: "3.7"
+
+services:
+  traefik:
+    container_name: bridgehead-traefik
+    image: docker.verbis.dkfz.de/cache/traefik:latest
+    command:
+      - --entrypoints.web.address=:80
+      - --entrypoints.websecure.address=:443
+      - --providers.docker=true
+      - --providers.docker.exposedbydefault=false
+      - --providers.file.directory=/configuration/
+      - --api.dashboard=true
+      - --accesslog=true
+      - --entrypoints.web.http.redirections.entrypoint.to=websecure
+      - --entrypoints.web.http.redirections.entrypoint.scheme=https
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dashboard.rule=PathPrefix(`/api`) || PathPrefix(`/dashboard`)"
+      - "traefik.http.routers.dashboard.entrypoints=websecure"
+      - "traefik.http.routers.dashboard.service=api@internal"
+      - "traefik.http.routers.dashboard.tls=true"
+      - "traefik.http.routers.dashboard.middlewares=auth"
+      - "traefik.http.middlewares.auth.basicauth.users=${LDM_LOGIN}"
+    ports:
+      - 80:80
+      - 443:443
+    volumes:
+      - /etc/bridgehead/traefik-tls:/certs:ro
+      - ../lib/traefik-configuration/:/configuration:ro
+      - /var/run/docker.sock:/var/run/docker.sock:ro
+
+  forward_proxy:
+    container_name: bridgehead-forward-proxy
+    image: docker.verbis.dkfz.de/cache/samply/bridgehead-forward-proxy:latest
+    environment:
+      HTTPS_PROXY: ${HTTPS_PROXY_URL}
+      USERNAME: ${HTTPS_PROXY_USERNAME}
+      PASSWORD: ${HTTPS_PROXY_PASSWORD}
+    volumes:
+      - /etc/bridgehead/trusted-ca-certs:/docker/custom-certs/:ro
+
+  landing:
+    container_name: bridgehead-landingpage
+    image: docker.verbis.dkfz.de/cache/samply/bridgehead-landingpage:master
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.landing.rule=PathPrefix(`/`)"
+      - "traefik.http.services.landing.loadbalancer.server.port=80"
+      - "traefik.http.routers.landing.tls=true"
+    environment:
+      HOST: ${HOST}
+      PROJECT: ${PROJECT}
+      SITE_NAME: ${SITE_NAME}
+
+

minimal/modules/dnpm-compose-beamconnect.yml

@@ -0,0 +1,47 @@
+version: "3.7"
+
+services:
+  dnpm-beam-proxy:
+    image: docker.verbis.dkfz.de/cache/samply/beam-proxy:develop
+    container_name: bridgehead-dnpm-beam-proxy
+    environment:
+      BROKER_URL: ${BROKER_URL}
+      PROXY_ID: ${PROXY_ID}
+      APP_3_ID: dnpm-connect
+      APP_3_KEY: ${DNPM_BEAM_SECRET_SHORT}
+      PRIVKEY_FILE: /run/secrets/proxy.pem
+      ALL_PROXY: http://forward_proxy:3128
+      TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
+      ROOTCERT_FILE: /conf/root.crt.pem
+    secrets:
+      - proxy.pem
+    depends_on:
+      - "forward_proxy"
+    volumes:
+      - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
+      - /srv/docker/bridgehead/ccp/root.crt.pem:/conf/root.crt.pem:ro
+
+  dnpm-beam-connect:
+    depends_on: [ dnpm-beam-proxy ]
+    image: samply/beam-connect:sites-without-auth
+    environment:
+      PROXY_URL: http://dnpm-beam-proxy:8081
+      PROXY_APIKEY: ${DNPM_BEAM_SECRET_SHORT}
+      APP_ID: dnpm-connect.${PROXY_ID}
+      DISCOVERY_URL: ${DNPM_DISCOVERY_URL}
+      LOCAL_TARGETS_FILE: /conf/connect_targets.json
+      HTTP_PROXY: http://forward_proxy:3128
+      HTTPS_PROXY: http://forward_proxy:3128
+      NO_PROXY: dnpm-beam-proxy,dnpm-backend
+      RUST_LOG: ${RUST_LOG:-info}
+    volumes:
+      - /etc/bridgehead/dnpm/local_targets.json:/conf/connect_targets.json:ro
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dnpm-connect.rule=PathPrefix(`/dnpm-connect`)"
+      - "traefik.http.services.dnpm-connect.loadbalancer.server.port=8062"
+      - "traefik.http.routers.dnpm-connect.tls=true"
+
+secrets:
+  proxy.pem:
+    file: /etc/bridgehead/pki/${SITE_ID}.priv.pem

minimal/modules/dnpm-compose-bwhc.yml

@@ -0,0 +1,54 @@
+version: "3.7"
+
+services:
+  dnpm-frontend:
+    depends_on: [ dnpm-backend ]
+    build:
+      context: ../../dnpm/origin
+      dockerfile: Frontend.Dockerfile
+      network: host
+      args:
+        NUXT_HOST: 0.0.0.0
+        NUXT_PORT: 3000
+        BACKEND_PROTOCOL: ${DNPM_BMHC_BACKEND_PROTOCOL}
+        BACKEND_HOSTNAME: ${DNPM_BWHC_BACKEND_HOSTNAME}
+        BACKEND_PORT: 9000
+        DNPM_BWHC_FRONTEND_ZIP: ${DNPM_BWHC_FRONTEND_ZIP}
+        HTTP_PROXY: ${http_proxy}
+        HTTPS_PROXY: ${https_proxy}
+    environment:
+        BACKEND_PROTOCOL: ${DNPM_BMHC_BACKEND_PROTOCOL}
+        BACKEND_HOSTNAME: ${DNPM_BWHC_BACKEND_HOSTNAME}
+        BACKEND_PORT: 9000
+        no_proxy: dnpm-backend
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dnpm-frontend.rule=PathPrefix(`/dnpm-frontend`)"
+      - "traefik.http.services.dnpm-frontend.loadbalancer.server.port=3000"
+      - "traefik.http.routers.dnpm-frontend.tls=true"
+
+  dnpm-backend:
+    build:
+      context: ../../dnpm/origin
+      dockerfile: Backend.Dockerfile
+      args:
+        BWHC_BASE_DIR: /bwhc-backend
+        DNPM_BWHC_BACKEND_ZIP: ${DNPM_BWHC_BACKEND_ZIP}
+    ports:
+      - 9000:9000
+    environment:
+      APPLICATION_SECRET: ${DNPM_APPLICATION_SECRET}
+      ZPM_SITE: ${ZPM_SITE}
+      noproxy: dnpm-frontend,dnpm-beam-connect
+      # PLAY_HTTP_PORT: 9000
+      # PLAY_HTTP_ADDRESS: 0.0.0.0
+    volumes:
+      - ../dnpm/origin/logback.xml:/bwhc-backend/logback.xml:ro
+      - /etc/bridgehead/dnpm/bwhcConnectorConfig.xml:/bwhc-backend/bwhcConnectorConfig.xml:ro
+      - /etc/bridgehead/dnpm/production.conf:/bwhc-backend/production.conf:ro
+      - bwhc_data:/bwhc-backend/data/
+      - bwhc_hgnc_data:/bwhc-backend/hgnc_data/
+
+volumes:
+  bwhc_data:
+  bwhc_hgnc_data:

minimal/modules/dnpm-setup.sh

@@ -0,0 +1,17 @@
+#!/bin/bash
+
+if [ -n "${ENABLE_DNPM}" ]; then
+	log INFO "DNPM setup detected (Beam.Connect) -- will start Beam.Connect for DNPM."
+	OVERRIDE+=" -f ./$PROJECT/modules/dnpm-compose-beamconnect.yml"
+
+	# Set variables required for Beam-Connect
+	DNPM_APPLICATION_SECRET="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
+	DNPM_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
+	DNPM_DISCOVERY_URL="https://dnpm.medizin.uni-tuebingen.de/sites"
+
+	# Optionally, start bwhc as well. This is currently only experimental
+	if [ -n "${ENABLE_DNPM_BWHC}" ]; then
+		log INFO "DNPM setup detected (with Frontend/Backend) -- will start BWHC Frontend/Backend. This is highly experimental!"
+		OVERRIDE+=" -f ./$PROJECT/modules/dnpm-compose-bwhc.yml"
+	fi
+fi

minimal/vars

@@ -0,0 +1,5 @@
+for module in $PROJECT/modules/*.sh
+do
+    log INFO "sourcing $module"
+    source $module
+done