From 4658a115c2b9383d166ba98f5ecda3184fbfb5e6 Mon Sep 17 00:00:00 2001
From: Martin Jurk <martin.jurk@dkfz-heidelberg.de>
Date: Mon, 16 Feb 2026 10:31:54 +0100
Subject: [PATCH] clean up

---
 itcc/docker-compose.yml             |  4 ++--
 itcc/modules/itcc-omics-ingest.yaml | 22 +++++++++++-----------
 2 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/itcc/docker-compose.yml b/itcc/docker-compose.yml
index 49edff0a..336cc80c 100644
--- a/itcc/docker-compose.yml
+++ b/itcc/docker-compose.yml
@@ -32,7 +32,7 @@ services:
       BEAM_PROXY_URL: http://beam-proxy:8081
       RETRY_COUNT: ${FOCUS_RETRY_COUNT}
       EPSILON: 0.28
-      QUERIES_TO_CACHE: '/queries_to_cache.conf'
+      QUERIES_TO_CACHE: "/queries_to_cache.conf"
       ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
     volumes:
       - /srv/docker/bridgehead/itcc/queries_to_cache.conf:/queries_to_cache.conf:ro
@@ -47,6 +47,7 @@ services:
       BROKER_URL: ${BROKER_URL}
       PROXY_ID: ${PROXY_ID}
       APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT}
+      APP_omics-endpoint_KEY: ${FOCUS_BEAM_SECRET_SHORT}
       PRIVKEY_FILE: /run/secrets/proxy.pem
       ALL_PROXY: http://forward_proxy:3128
       TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
@@ -59,7 +60,6 @@ services:
       - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
       - /srv/docker/bridgehead/itcc/root.crt.pem:/conf/root.crt.pem:ro
 
-
 volumes:
   blaze-data:
 
diff --git a/itcc/modules/itcc-omics-ingest.yaml b/itcc/modules/itcc-omics-ingest.yaml
index 67a57094..cac7a33e 100644
--- a/itcc/modules/itcc-omics-ingest.yaml
+++ b/itcc/modules/itcc-omics-ingest.yaml
@@ -1,17 +1,17 @@
 services:
   omics-endpoint:
-    image: ghcr.io/samply/itcc-omics-ingest:hotfix-docker
+    image: ghcr.io/samply/itcc-omics-ingest:data-lake-s3
     environment:
-      - API_KEY=${GENERATE_API_KEY}
-      - RUST_LOG=debug
-      - BEAM_ID=app1.proxy1.broker
-      - BEAM_SECRET="${FOCUS_BEAM_SECRET_SHORT}"
-      - BEAM_URL=http://beam-proxy:8081
-      - ML_URL=http://mainzelliste:8080
-      - BLAZE_URL="http://bridgehead-itcc-blaze:8080/fhir/"
-      - DATA_LAKE_ID="${DATA_LAKE_ID}"
-      - PARTNER_ID=itcc-inform
-      - ML_API_KEY=${GENERATE_API_KEY}
+      API_KEY: ${GENERATE_API_KEY}
+      RUST_LOG: debug
+      BEAM_ID: "omics-endpoint.${PROXY_ID}"
+      BEAM_SECRET: "${FOCUS_BEAM_SECRET_SHORT}"
+      BEAM_URL: http://beam-proxy:8081
+      ML_URL: http://mainzelliste:8080
+      BLAZE_URL: http://bridgehead-itcc-blaze:8080/fhir/
+      DATA_LAKE_ID: "${DATA_LAKE_ID}"
+      PARTNER_ID: itcc-inform
+      ML_API_KEY: ${GENERATE_API_KEY}
 
     volumes:
       - /var/cache/bridgehead/omics/data:/data/uploads