Feature/ml itcc (#380)

* sites moved to etc itcc.comf

* mainzelliste test

* volume

* fix image

* db name chaged

* ingest component test

* clean up

* maizelliste env db

* test server ip

* beam sockets

* teswt socket and task

* secure db and ml

* refactor and patient endpoints

* partner id

* new refactor and encription key generation

* db deleted

* keyset to var/

itcc/modules/itcc-omics-ingest.yaml

@@ -1,14 +1,69 @@
 services:
   omics-endpoint:
-    image: ghcr.io/samply/itcc-omics-ingest:main
+    image: samply/itcc-omics-ingest:main
     environment:
-      - API_KEY=${GENERATE_API_KEY}
-    volumes:
-      - /var/cache/bridgehead/omics/data:/data/uploads
+      API_KEY: ${GENERATE_API_KEY}
+      BEAM_APP_ID_LONG: omics-endpoint.${PROXY_ID}
+      BEAM_SECRET: ${FOCUS_BEAM_SECRET_SHORT}
+      DWH_SOCKET_ID: ${DWH_SOCKET_ID}
+      DWH_TASK_ID: ${DWH_TASK_ID}
+      PARTNER_ID: ${SITE_ID}
+      ML_API_KEY: ${GENERATE_API_KEY}
     labels:
-      - "traefik.http.routers.omics.rule=Host(`${HOST}`) && PathPrefix(`/api/omics`)"
+      - "traefik.http.routers.omics.rule=Host(`${HOST}`) &&
+        PathPrefix(`/api/upload`)"
       - "traefik.enable=true"
       - "traefik.http.services.omics.loadbalancer.server.port=6080"
       - "traefik.http.routers.omics.tls=true"
       - "traefik.http.middlewares.omics-stripprefix.stripprefix.prefixes=/api"
       - "traefik.http.routers.omics.middlewares=omics-stripprefix"
+
+  patientlist-db:
+    image: postgres:${POSTGRES_TAG}
+    container_name: bridgehead-patientlist-db
+    restart: unless-stopped
+    environment:
+      POSTGRES_DB: mainzelliste
+      POSTGRES_USER: ${ML_DB_USER}
+      POSTGRES_PASSWORD: ${PATIENTLIST_POSTGRES_PASSWORD}
+    volumes:
+      - "patientlist-db-data:/var/lib/postgresql/data"
+    healthcheck:
+      test: ["CMD-SHELL", "pg_isready -U ${ML_DB_USER} -d mainzelliste"]
+      interval: 5s
+      timeout: 5s
+      retries: 10
+      start_period: 10s
+
+  patientlist:
+    image: medicalinformatics/mainzelliste:latest
+    container_name: bridgehead-patientlist
+    restart: unless-stopped
+    depends_on:
+      patientlist-db:
+        condition: service_healthy
+    environment:
+      ML_API_KEY: ${GENERATE_API_KEY}
+      ML_DB_HOST: patientlist-db
+      ML_DB_PORT: "5432"
+      ML_DB_NAME: mainzelliste
+      ML_DB_USER: ${ML_DB_USER}
+      ML_DB_PASS: ${PATIENTLIST_POSTGRES_PASSWORD}
+      ML_DB_DRIVER: org.postgresql.Driver
+      ML_DB_TYPE: postgresql
+      ML_LOG_LEVEL: INFO
+      ML_ALLOWEDREMOTEADDRESSES: "127.0.0.1,::1,172.16.0.0/12"
+
+    secrets:
+      - mainzelliste.docker.conf
+      - source: symmetric_key
+        target: /etc/resources/keys/symmetric_key.json
+
+volumes:
+  patientlist-db-data:
+secrets:
+  mainzelliste.docker.conf:
+    file: /etc/bridgehead/mainzelliste/mainzelliste.docker.conf
+
+  symmetric_key:
+    file: /var/bridgehead/mainzelliste/keyset_siv.json