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Clean up bwhc startup

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This commit is contained in:
Tobias Kussel
2023-05-16 10:56:28 +00:00
parent 187945b27e
commit 4e7f023b8a
13 changed files with 54 additions and 170 deletions
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66
minimal/modules/dnpm-backend.Dockerfile Normal file
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FROM openjdk:11-jre AS builder
ARG DNPM_BWHC_BACKEND_ZIP
# Change to latest release
ARG VERSION=broker
ARG BWHC_BASE_DIR=/bwhc-backend
ENV BWHC_BASE_DIR=$BWHC_BASE_DIR
ENV BWHC_USER_DB_DIR=$BWHC_BASE_DIR/data/user-db
ENV BWHC_DATA_ENTRY_DIR=$BWHC_BASE_DIR/data/data-entry
ENV BWHC_QUERY_DATA_DIR=$BWHC_BASE_DIR/data/query-data
ADD ${DNPM_BWHC_BACKEND_ZIP} /
RUN unzip $(basename ${DNPM_BWHC_BACKEND_ZIP}) && rm $(basename ${DNPM_BWHC_BACKEND_ZIP})
WORKDIR $BWHC_BASE_DIR
# Prepare config file to use environment variables from docker
RUN sed -i -r "s/APPLICATION_SECRET(.*)/#APPLICATION_SECRET\1/" ./config
RUN sed -i -r "s/ZPM_SITE(.*)/#ZPM_SITE\1/" ./config
# Prepare config file to use fix environment variables for this image
RUN sed -i -r "s~BWHC_DATA_ENTRY_DIR.*~BWHC_DATA_ENTRY_DIR=$BWHC_DATA_ENTRY_DIR~" ./config
RUN sed -i -r "s~BWHC_QUERY_DATA_DIR.*~BWHC_QUERY_DATA_DIR=$BWHC_QUERY_DATA_DIR~" ./config
RUN sed -i -r "s~BWHC_USER_DB_DIR.*~BWHC_USER_DB_DIR=$BWHC_USER_DB_DIR~" ./config
RUN ./install.sh $BWHC_BASE_DIR
RUN mv bwhc-rest-api-gateway-*/ bwhc-rest-api-gateway/
FROM openjdk:11-jre
ARG BWHC_BASE_DIR=/bwhc-backend
ENV BWHC_BASE_DIR=$BWHC_BASE_DIR
ENV BWHC_USER_DB_DIR=$BWHC_BASE_DIR/data/user-db
ENV BWHC_DATA_ENTRY_DIR=$BWHC_BASE_DIR/data/data-entry
ENV BWHC_QUERY_DATA_DIR=$BWHC_BASE_DIR/data/query-data
ENV BWHC_CONNECTOR_CONFIG=$BWHC_BASE_DIR/bwhcConnectorConfig.xml
COPY --from=builder $BWHC_BASE_DIR/config $BWHC_BASE_DIR/
COPY --from=builder $BWHC_BASE_DIR/bwhcConnectorConfig.xml $BWHC_BASE_DIR/
COPY --from=builder $BWHC_BASE_DIR/logback.xml $BWHC_BASE_DIR/
COPY --from=builder $BWHC_BASE_DIR/production.conf $BWHC_BASE_DIR/
COPY --from=builder $BWHC_BASE_DIR/bwhc-rest-api-gateway/ $BWHC_BASE_DIR/bwhc-rest-api-gateway/
VOLUME $BWHC_BASE_DIR/data
VOLUME $BWHC_BASE_DIR/hgnc_data
EXPOSE ${BWHC_BACKEND_PORT}
WORKDIR $BWHC_BASE_DIR
CMD $BWHC_BASE_DIR/bwhc-rest-api-gateway/bin/bwhc-rest-api-gateway \
-Dplay.http.secret.key=$APPLICATION_SECRET \
-Dconfig.file=$BWHC_BASE_DIR/production.conf \
-Dlogger.file=$BWHC_BASE_DIR/logback.xml \
-Dpidfile.path=/dev/null \
-Dbwhc.zpm.site=$ZPM_SITE \
-Dbwhc.data.entry.dir=$BWHC_DATA_ENTRY_DIR \
-Dbwhc.query.data.dir=$BWHC_QUERY_DATA_DIR \
-Dbwhc.user.data.dir=$BWHC_USER_DB_DIR \
-Dbwhc.hgnc.dir=$BWHC_HGNC_DIR \
-Dbwhc.connector.configFile=$BWHC_CONNECTOR_CONFIG