samply
/
bridgehead
mirror of https://github.com/samply/bridgehead.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity

Using bridgehead user for performing git pull 

Otherwise problems can arise with authentication.
This commit is contained in:
Gerhard Salvini 2024-07-16 16:06:10 +02:00
parent a8a15aaad8
commit 5b2c3d7725
3 changed files with 11 additions and 6 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
bbmri/modules/ehds2-compose.yml
View File

@ -60,7 +60,7 @@ services:
[ ! -f /app/data/lock ] && \
( \
echo 'Wait for Blaze to finish initializing' ; \
sleep 300 ; \
sleep 360 ; \
echo 'Remove old output files' ; \
rm -rf /app/test/* ; \
cd /app ; \
@ -78,5 +78,5 @@ services:
test-data-loader:
container_name: test-data-loader
image: samply/test-data-loader
command: sh -c "sleep 400 && echo Listing all resources in FHIR store && blazectl --server http://bridgehead-bbmri-blaze:8080/fhir count-resources && tail -f /dev/null"
command: sh -c "sleep 420 && echo Listing all resources in FHIR store && blazectl --server http://bridgehead-bbmri-blaze:8080/fhir count-resources && tail -f /dev/null"

4
bridgehead
View File

@ -88,9 +88,11 @@ case "$ACTION" in
start)
loadVars
hc_send log "Bridgehead $PROJECT startup: Checking requirements ..."
chown -R bridgehead ${BASE}
checkRequirements
# Note: changes to "bridgehead" script will only take effect after next start.
git pull
su bridgehead -c "git pull"
chown -R bridgehead ${BASE}
# Local versions of focus and transfair are needed by EHDS2
clone_focus_if_nonexistent ${BASE}/..
build_focus ${BASE}/..

9
lib/functions.sh
View File

@ -258,7 +258,8 @@ function clone_repo_if_nonexistent() {
cd "$target_dir"
# Checkout the specified branch
git checkout "$branch_name"
chown -R bridgehead .
su bridgehead -c "git checkout $branch_name"
echo "Checked out branch '$branch_name'."
cd -
@ -286,8 +287,9 @@ function build_transfair() {
# 2. There is no data lock file (which means that no ETL has yet been run).
if ls ../ecdc/data/*.[cC][sS][vV] 1> /dev/null 2>&1 && [ ! -f ../ecdc/data/lock ]; then
cd $base_dir/transfair
git pull
su bridgehead -c "git pull"
docker build --progress=plain -t samply/transfair --no-cache .
chown -R bridgehead .
cd -
fi
}
@ -296,8 +298,9 @@ function build_focus() {
local base_dir="$1"
cd $base_dir/focus
git pull
su bridgehead -c "git pull"
docker build --progress=plain -f DockerfileWithBuild -t samply/focus --no-cache .
chown -R bridgehead .
cd -
}