From 5f443c8ff56f3906ab4abc56323fb4e797ad28fe Mon Sep 17 00:00:00 2001 From: juarez Date: Thu, 14 Dec 2023 00:08:41 +0100 Subject: [PATCH] Default values for MTBA --- ccp/modules/mtba-compose.yml | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/ccp/modules/mtba-compose.yml b/ccp/modules/mtba-compose.yml index 9fcb74c..f03532f 100644 --- a/ccp/modules/mtba-compose.yml +++ b/ccp/modules/mtba-compose.yml @@ -12,14 +12,14 @@ services: ID_MANAGER_API_KEY: ${IDMANAGER_UPLOAD_APIKEY} ID_MANAGER_PSEUDONYM_ID_TYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID ID_MANAGER_URL: http://id-manager:8080/id-manager - PATIENT_CSV_FIRST_NAME_HEADER: ${MTBA_PATIENT_CSV_FIRST_NAME_HEADER} - PATIENT_CSV_LAST_NAME_HEADER: ${MTBA_PATIENT_CSV_LAST_NAME_HEADER} - PATIENT_CSV_GENDER_HEADER: ${MTBA_PATIENT_CSV_GENDER_HEADER} - PATIENT_CSV_BIRTHDAY_HEADER: ${MTBA_PATIENT_CSV_BIRTHDAY_HEADER} + PATIENT_CSV_FIRST_NAME_HEADER: ${MTBA_PATIENT_CSV_FIRST_NAME_HEADER:-FIRST_NAME} + PATIENT_CSV_LAST_NAME_HEADER: ${MTBA_PATIENT_CSV_LAST_NAME_HEADER:-LAST_NAME} + PATIENT_CSV_GENDER_HEADER: ${MTBA_PATIENT_CSV_GENDER_HEADER:-GENDER} + PATIENT_CSV_BIRTHDAY_HEADER: ${MTBA_PATIENT_CSV_BIRTHDAY_HEADER:-BIRTHDAY} CBIOPORTAL_URL: http://cbioportal:8080 - FILE_CHARSET: ${MTBA_FILE_CHARSET} - FILE_END_OF_LINE: ${MTBA_FILE_END_OF_LINE} - CSV_DELIMITER: ${MTBA_CSV_DELIMITER} + FILE_CHARSET: ${MTBA_FILE_CHARSET:-UTF-8} + FILE_END_OF_LINE: ${MTBA_FILE_END_OF_LINE:-LF} + CSV_DELIMITER: ${MTBA_CSV_DELIMITER:-TAB} HTTP_RELATIVE_PATH: "/mtba" KEYCLOAK_ADMIN_GROUP: "${KEYCLOAK_ADMIN_GROUP}" KEYCLOAK_CLIENT_ID: "${KEYCLOAK_PRIVATE_CLIENT_ID}"