refactor

itcc/modules/itcc-omics-ingest.sh

@@ -2,4 +2,5 @@
 
 if [ -n "$ENABLE_OMICS" ];then
   OVERRIDE+=" -f ./$PROJECT/modules/itcc-omics-ingest.yaml"
+  GENERATE_API_KEY="$(generate_simple_password 'omics')"
 fi

itcc/modules/itcc-omics-ingest.yaml

@@ -2,14 +2,11 @@ services:
   omics-endpoint:
     build: .
     image: ghcr.io/samply/itcc-omics-ingest:pr-3
-    ports:
-      - "6080:6080"
     environment:
-      - UPLOAD_DIR=/data/uploads
-      - API_KEY=omics
+      - API_KEY=${GENERATE_API_KEY}
       - RUST_LOG=trace
     volumes:
-      - /srv/docker/data:/data/uploads
+      - /var/cache/bridgehead/omics/data:/data/uploads
     labels:
       - "traefik.http.routers.omics.rule=Host(`${HOST}`) && PathPrefix(`/api/omics`)"
       - "traefik.enable=true"