diff --git a/ccp/modules/cbioportal-compose.yml b/ccp/modules/cbioportal-compose.yml index 08d49a8..35a7f92 100644 --- a/ccp/modules/cbioportal-compose.yml +++ b/ccp/modules/cbioportal-compose.yml @@ -1,22 +1,29 @@ version: '3.7' services: -# cbioportal: -# image: docker.verbis.dkfz.de/ccp/dktk-cbioportal:latest -# container_name: bridgehead-cbioportal -# environment: -# DB_PASSWORD: ${CBIOPORTAL_DB_PASSWORD} -# depends_on: -# - cbioportal-database -# - cbioportal-session -# labels: -# - "traefik.enable=true" -# - "traefik.http.routers.cbioportal.rule=PathPrefix(`/cbioportal`)" -# - "traefik.http.services.cbioportal.loadbalancer.server.port=8080" -# - "traefik.http.routers.cbioportal.tls=true" -# - "traefik.http.routers.cbioportal-update.rule=PathPrefix(`/cbioportal-update`)" -# - "traefik.http.services.cbioportal-update.loadbalancer.server.port=8001" -# - "traefik.http.routers.cbioportal-update.tls=true" + cbioportal: + #image: docker.verbis.dkfz.de/ccp/dktk-cbioportal:latest + image: dktk-cbioportal + container_name: bridgehead-cbioportal + environment: + DB_PASSWORD: ${CBIOPORTAL_DB_PASSWORD} + HTTP_RELATIVE_PATH: "/cbioportal" + UPLOAD_HTTP_RELATIVE_PATH: "/cbioportal-upload" + depends_on: + - cbioportal-database + - cbioportal-session + labels: + - "traefik.enable=true" + - "traefik.http.routers.cbioportal.rule=PathPrefix(`/cbioportal`)" + - "traefik.http.routers.cbioportal.service=cbioportal + - "traefik.http.services.cbioportal.loadbalancer.server.port=8080" + - "traefik.http.routers.cbioportal.tls=true" + - "traefik.http.routers.cbioportal-upload.rule=PathPrefix(`/cbioportal-upload`)" + - "traefik.http.routers.cbioportal-upload.service=cbioportal-upload + - "traefik.http.routers.cbioportal-upload.tls=true" + - "traefik.http.services.cbioportal-upload.loadbalancer.server.port=8001" + + cbioportal-database: #image: docker.verbis.dkfz.de/ccp/dktk-cbioportal-database:latest diff --git a/ccp/modules/cbioportal-setup.sh b/ccp/modules/cbioportal-setup.sh index 10b3d6a..0f4e621 100644 --- a/ccp/modules/cbioportal-setup.sh +++ b/ccp/modules/cbioportal-setup.sh @@ -1,8 +1,8 @@ #!/bin/bash -e -if [ "$ENABLE_CBIOPORTAL" == true ]; then +# if [ "$ENABLE_CBIOPORTAL" == true ]; then log INFO "cBioPortal setup detected -- will start cBioPortal service." OVERRIDE+=" -f ./$PROJECT/modules/cbioportal-compose.yml" CBIOPORTAL_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password for the cbioportal database. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)" - CBIOPORTAL_DB_ROOT_PASSWORD="$(echo \"This is a salt string to generate one consistent root password for the cbioportal database. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 64)" -fi + CBIOPORTAL_DB_ROOT_PASSWORD="$(echo \"This is a salt string to generate one consistent root password for the cbioportal database. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 64)" +# fi