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feat: itcc lens2 (#365)

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This commit is contained in:
Martin Jurk
2026-01-28 14:28:09 +01:00
committed by GitHub
parent 7dc9e2e663
commit 6923ead6ce
5 changed files with 50 additions and 15 deletions
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6
itcc/modules/itcc-omics-ingest.sh Normal file
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#!/bin/bash
if [ -n "$ENABLE_OMICS" ];then
OVERRIDE+=" -f ./$PROJECT/modules/itcc-omics-ingest.yaml"
GENERATE_API_KEY="$(generate_simple_password 'omics')"
fi

14
itcc/modules/itcc-omics-ingest.yaml Normal file
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services:
omics-endpoint:
image: ghcr.io/samply/itcc-omics-ingest:main
environment:
- API_KEY=${GENERATE_API_KEY}
volumes:
- /var/cache/bridgehead/omics/data:/data/uploads
labels:
- "traefik.http.routers.omics.rule=Host(`${HOST}`) && PathPrefix(`/api/omics`)"
- "traefik.enable=true"
- "traefik.http.services.omics.loadbalancer.server.port=6080"
- "traefik.http.routers.omics.tls=true"
- "traefik.http.middlewares.omics-stripprefix.stripprefix.prefixes=/api"
- "traefik.http.routers.omics.middlewares=omics-stripprefix"

40
itcc/modules/lens-compose.yml
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@@ -1,33 +1,47 @@
version: "3.7"
services:
landing:
container_name: lens_federated-search
image: docker.verbis.dkfz.de/ccp/lens:${SITE_ID}
itcc-explorer:
container_name: lens_itcc_explorer
image: samply/itcc-explorer:main
environment:
HOST: "0.0.0.0"
BIND_ADDR: "0.0.0.0:3000"
PUBLIC_ENVIRONMENT: ${PUBLIC_ENVIRONMENT}
labels:
- "traefik.enable=true"
- "traefik.http.routers.landing.rule=PathPrefix(`/`)"
- "traefik.http.services.landing.loadbalancer.server.port=80"
- "traefik.http.routers.landing.tls=true"
- "traefik.http.routers.itcc.rule=Host(`${HOST}`) && PathPrefix(`/`)"
- "traefik.http.routers.itcc.entrypoints=websecure"
- "traefik.http.services.itcc.loadbalancer.server.port=3000"
- "traefik.http.routers.itcc.tls=true"
spot:
image: docker.verbis.dkfz.de/ccp-private/central-spot
image: samply/rustyspot:latest
environment:
BEAM_SECRET: "${FOCUS_BEAM_SECRET_SHORT}"
BEAM_URL: http://beam-proxy:8081
BEAM_PROXY_URL: http://beam-proxy:8081
BEAM_PROXY_ID: ${SITE_ID}
BEAM_BROKER_ID: ${BROKER_ID}
BEAM_APP_ID: "focus"
PROJECT_METADATA: "itcc"
BEAM_APP_ID: "spot.${SITE_ID}.${BROKER_ID}"
CORS_ORIGIN: "https://${HOST}"
SITES: ${SITES}
TRANSFORM: LENS
PROJECT: "itcc"
BIND_ADDR: 0.0.0.0:8055
depends_on:
- "beam-proxy"
labels:
- "traefik.enable=true"
- "traefik.http.services.spot.loadbalancer.server.port=8080"
- "traefik.http.services.spot.loadbalancer.server.port=8055"
- "traefik.http.middlewares.corsheaders2.headers.accesscontrolallowmethods=GET,OPTIONS,POST"
- "traefik.http.middlewares.corsheaders2.headers.accesscontrolallowheaders=content-type"
- "traefik.http.middlewares.corsheaders2.headers.accesscontrolalloworiginlist=https://${HOST}"
- "traefik.http.middlewares.corsheaders2.headers.accesscontrolallowcredentials=true"
- "traefik.http.middlewares.corsheaders2.headers.accesscontrolmaxage=-1"
- "traefik.http.routers.spot.rule=Host(`${HOST}`) && PathPrefix(`/backend`)"
- "traefik.http.middlewares.stripprefix_spot.stripprefix.prefixes=/backend"
- "traefik.http.routers.spot.rule=Host(`${HOST}`) && PathPrefix(`/prod`)"
- "traefik.http.middlewares.stripprefix_spot.stripprefix.prefixes=/prod"
- "traefik.http.routers.spot.tls=true"
- "traefik.http.routers.spot.middlewares=corsheaders2,stripprefix_spot,auth"
beam-proxy:
environment:
APP_spot_KEY: ${FOCUS_BEAM_SECRET_SHORT}