diff --git a/dhki/modules/dkfz-compose.yml b/dhki/modules/dkfz-compose.yml index 9442f8f..364e565 100644 --- a/dhki/modules/dkfz-compose.yml +++ b/dhki/modules/dkfz-compose.yml @@ -9,13 +9,13 @@ configs: "id": "UMM-TRANSFAIR", "name": "UMM TransFAIR", "virtualhost": "umm-transfair", - "beamconnect": "transfair.umm.${BROKER_ID}" + "beamconnect": "transfair-connect.umm.${BROKER_ID}" }, { "id": "UMM-BLAZE", "name": "UMM MDAT Blaze", "virtualhost": "umm-blaze", - "beamconnect": "blaze.umm.${BROKER_ID}" + "beamconnect": "transfair-connect.umm.${BROKER_ID}" } ] } diff --git a/dhki/modules/umm-compose.yml b/dhki/modules/umm-compose.yml new file mode 100644 index 0000000..db497ef --- /dev/null +++ b/dhki/modules/umm-compose.yml @@ -0,0 +1,48 @@ +version: "3.7" + +configs: + umm-beam-connect-central-targets: + content: | + { + "sites": [] + } + umm-beam-connect-local-targets: + content: | + [ + { + "external": "umm-transfair", + "internal": "transfair:8080", + "allowed": ["transfair-connect.dkfz.${BROKER_ID}"] + }, + { + "external": "umm-blaze", + "internal": "blaze:8080", + "allowed": ["transfair-connect.dkfz.${BROKER_ID}"] + } + ] + +services: + umm-beam-connect: + image: docker.verbis.dkfz.de/cache/samply/beam-connect:${BEAM_TAG} + container_name: bridgehead-umm-beam-connect + environment: + PROXY_URL: http://beam-proxy:8081 + APP_ID: transfair-connect.${PROXY_ID} + PROXY_APIKEY: ${UMM_TRANSFAIR_BEAM_SECRET} + DISCOVERY_URL: ./conf/central-targets.json + LOCAL_TARGETS_FILE: ./conf/local-targets.json + RUST_LOG: ${RUST_LOG:-info} + NO_PROXY: beam-proxy,transfair,blaze + configs: + - source: umm-beam-connect-central-targets + target: /conf/central-targets.json + - source: umm-beam-connect-local-targets + target: /conf/local-targets.json + depends_on: + - beam-proxy + - transfair + - blaze + + beam-proxy: + environment: + APP_transfair-connect_KEY: ${UMM_TRANSFAIR_BEAM_SECRET} diff --git a/dhki/modules/umm-setup.sh b/dhki/modules/umm-setup.sh new file mode 100644 index 0000000..8f5007f --- /dev/null +++ b/dhki/modules/umm-setup.sh @@ -0,0 +1,17 @@ +#!/bin/bash + +function ummSetup() { + if [ "${ENABLE_UMM:-}" == "true" ]; then + assertVarsNotEmpty TTP_URL TTP_ML_API_KEY PROJECT_ID_SYSTEM || \ + fail_and_report 1 "The UMM module requires TTP_URL, TTP_ML_API_KEY and PROJECT_ID_SYSTEM." + + log INFO "UMM TransFAIR setup detected -- will start TransFAIR, two dedicated Blaze stores and one Beam.Connect receiver." + + UMM_TRANSFAIR_BEAM_SECRET="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)" + + FHIR_REQUEST_URL="http://transfair-request-blaze:8080" + FHIR_INPUT_URL="http://transfair-input-blaze:8080" + + OVERRIDE+=" -f ./dhki/modules/umm-compose.yml --profile transfair-request-blaze --profile transfair-input-blaze" + fi +} diff --git a/dhki/vars b/dhki/vars index d2ab6df..8043abd 100644 --- a/dhki/vars +++ b/dhki/vars @@ -1,6 +1,7 @@ # This sets beam broker config depending on ENVIRONMENT source dhki/modules/dhki-setup.sh source dhki/modules/dkfz-setup.sh +source dhki/modules/umm-setup.sh # BROKER_ID is exported by previous script BROKER_URL=https://${BROKER_ID} @@ -10,6 +11,7 @@ FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64} SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem BEAM_FILE_SEND_SECRET="$(echo \"beam-file-send-salt\" | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)" +TRANSFAIR_TAG=${TRANSFAIR_TAG:-main} BROKER_URL_FOR_PREREQ=$BROKER_URL @@ -28,6 +30,7 @@ do source $module done +ummSetup transfairSetup dkfzSetup scoutSetup diff --git a/modules/transfair-setup.sh b/modules/transfair-setup.sh index 8a36ee1..6e51947 100755 --- a/modules/transfair-setup.sh +++ b/modules/transfair-setup.sh @@ -27,7 +27,7 @@ function transfairSetup() { else log INFO "TransFAIR configured without ttp" fi - TRANSFAIR_NO_PROXIES="transfair-input-blaze,blaze,transfair-requests-blaze" + TRANSFAIR_NO_PROXIES="transfair-input-blaze,blaze,transfair-request-blaze" if [ -n "${TRANSFAIR_NO_PROXY}" ]; then TRANSFAIR_NO_PROXIES+=",${TRANSFAIR_NO_PROXY}" fi