Merge pull request #131 from samply/feature/adt2fhir-rest

Feature/adt2fhir rest

ccp/modules/adt2fhir-rest-compose.yml

@@ -0,0 +1,18 @@
+version: "3.7"
+
+services:
+  adt2fhir-rest:
+    container_name: bridgehead-adt2fhir-rest
+    image: docker.verbis.dkfz.de/ccp/adt2fhir-rest:main
+    environment:
+      IDTYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID
+      MAINZELLISTE_APIKEY: ${IDMANAGER_LOCAL_PATIENTLIST_APIKEY}
+      SALT: ${LOCAL_SALT}
+    restart: always
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.adt2fhir-rest.rule=PathPrefix(`/adt2fhir-rest`)"
+      - "traefik.http.middlewares.adt2fhir-rest_strip.stripprefix.prefixes=/adt2fhir-rest"
+      - "traefik.http.services.adt2fhir-rest.loadbalancer.server.port=8080"
+      - "traefik.http.routers.adt2fhir-rest.tls=true"
+      - "traefik.http.routers.adt2fhir-rest.middlewares=adt2fhir-rest_strip,auth"

ccp/modules/adt2fhir-rest-setup.sh

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+function adt2fhirRestSetup() {
+  if [ -n "$ENABLE_ADT2FHIR_REST" ]; then
+    log INFO "ADT2FHIR-REST setup detected -- will start adt2fhir-rest API."
+    if [ ! -n "$IDMANAGER_LOCAL_PATIENTLIST_APIKEY" ]; then
+      log ERROR "Missing ID-Management Module! Fix this by setting up ID Management:"
+      exit 1;
+    fi
+    OVERRIDE+=" -f ./$PROJECT/modules/adt2fhir-rest-compose.yml"
+    LOCAL_SALT="$(echo \"local-random-salt\" | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
+  fi
+}

ccp/modules/id-management-setup.sh

@@ -39,6 +39,7 @@ function applySpecialCases() {
 	result="$1";
 	result="${result/Lmu/LMU}";
 	result="${result/Tum/TUM}";
+	result="${result/Dktk Test/Teststandort}";
 	echo "$result";
 }
 

ccp/modules/mtba-setup.sh

@@ -1,11 +1,10 @@
 #!/bin/bash
 
 function mtbaSetup() {
-       # TODO: Check if ID-Management Module is activated!
   if [ -n "$ENABLE_MTBA" ];then
     log INFO "MTBA setup detected -- will start MTBA Service and CBioPortal."
     if [ ! -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
-                      log ERROR "Detected MTBA Module configuration but ID-Management Module seems not to be configured!"
+      log ERROR "Missing ID-Management Module! Fix this by setting up ID Management:"
       exit 1;
     fi
     OVERRIDE+=" -f ./$PROJECT/modules/mtba-compose.yml"

ccp/modules/nngm-setup.sh

@@ -1,8 +1,6 @@
 #!/bin/bash
 
-function nngmSetup() {
+if [ -n "$NNGM_CTS_APIKEY" ]; then
-	if [ -n "$NNGM_CTS_APIKEY" ]; then
   log INFO "nNGM setup detected -- will start nNGM Connector."
   OVERRIDE+=" -f ./$PROJECT/modules/nngm-compose.yml"
-	fi
+fi
-	}

ccp/vars

@@ -16,5 +16,5 @@ do
 done
 
 idManagementSetup
-nngmSetup
 mtbaSetup
+adt2fhirRestSetup