From 846e9c23a7f54096d43efd8523bebda99be50128 Mon Sep 17 00:00:00 2001 From: juarez Date: Thu, 10 Aug 2023 14:08:49 +0200 Subject: [PATCH] Add DataSHIELD module documentation --- ccp/modules/datashield.md | 26 ++++++++++++++++++++++++++ 1 file changed, 26 insertions(+) diff --git a/ccp/modules/datashield.md b/ccp/modules/datashield.md index e69de29..33e0123 100644 --- a/ccp/modules/datashield.md +++ b/ccp/modules/datashield.md @@ -0,0 +1,26 @@ +# DataSHIELD +This module constitutes the infrastructure to run DataSHIELD within the bridghead. +For more information about DataSHIELD, please visit https://www.datashield.org/ + +## R-Studio +To connect to the different bridgeheads of the CCP through DataSHIELD, you can use your own R-Studio environment. +However, this R-Studio has already installed the DataSHIELD libraries and is integrated within the bridgehead. +This can save you some time for extra configuration of your R-Studio environment. + +## Opal +This is the core of DataSHIELD. It is made up of Opal, a Postgres database and an R-server. +For more information about Opal, please visit https://opaldoc.obiba.org + +### Opal +Opal is OBiBa’s core database application for biobanks. + +### Opal-DB +Opal requires a database to import the data for DataSHIELD. We use a Postgres instance as database. +The data is imported within the bridgehead through the exporter. + +### Opal-R-Server +R-Server to execute R scripts in DataSHIELD. + +## Beam +### Beam-Connect +### Beam-Proxy