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Changes made for EHDS2

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The EHDS2 project has initiated a use case for antibiotic resistance
under the control of the ECDC. This branch caters for the ECDC
requirements.

Specifically, it contains the ETL to transform the ECDC CSV format to
FHIR, plus additional configuration options that have been packaged into
the bbmri project.
This commit is contained in:
Croft
2024-02-12 16:07:57 +01:00
parent f3abde1dfd
commit 8af5cf3f01
6 changed files with 139 additions and 1 deletions
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11
bbmri/vars
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@ -4,6 +4,9 @@
# Makes only sense for German Biobanks
: ${ENABLE_GBN:=false}
# Makes only sense for EHDS2 project
: ${ENABLE_EHDS2:=false}
FOCUS_RETRY_COUNT=32
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
@ -20,6 +23,10 @@ if [ -n "$GBN_SUPPORT_EMAIL" ]; then
SUPPORT_EMAIL=$GBN_SUPPORT_EMAIL
fi
if [ -n "$EHDS2_SUPPORT_EMAIL" ]; then
SUPPORT_EMAIL=$EHDS2_SUPPORT_EMAIL
fi
function do_enroll {
COUNT=0
if [ "$ENABLE_ERIC" == "true" ]; then
@ -30,6 +37,10 @@ function do_enroll {
do_enroll_inner $GBN_PROXY_ID $GBN_SUPPORT_EMAIL
COUNT=$((COUNT+1))
fi
if [ "$ENABLE_EHDS2" == "true" ]; then
do_enroll_inner $EHDS2_PROXY_ID $EHDS2_SUPPORT_EMAIL
COUNT=$((COUNT+1))
fi
if [ $COUNT -ge 2 ]; then
echo
echo "You just received $COUNT certificate signing requests (CSR). Please send $COUNT e-mails, with 1 CSR each, to the respective e-mail address."