From 8cdf139319989d455573d3cca8ed9531e0680b22 Mon Sep 17 00:00:00 2001
From: tm16-medma <142219207+tm16-medma@users.noreply.github.com>
Date: Tue, 17 Mar 2026 20:54:17 +0100
Subject: [PATCH] Clean up ccp/vars by removing commented settings

Removed extensive comments and configuration settings for the OVIS Bridgehead Module from ccp/vars.
---
 ccp/vars | 133 -------------------------------------------------------
 1 file changed, 133 deletions(-)

diff --git a/ccp/vars b/ccp/vars
index 8ad20b01..1a626b8a 100644
--- a/ccp/vars
+++ b/ccp/vars
@@ -23,139 +23,6 @@ do
     source $module
 done
 
-
-# ========================================
-# OVIS Bridgehead Module Configuration
-# ========================================
-# Copy this file to ccp/vars and customize for your site.
-# This module supports CCP (FHIR-based) or DEMO (bundled data) import modes.
-# ========================================
-
-# Enable OVIS module
-ENABLE_OVIS=
-
-# ========================================
-# IMPORT MODE
-# ========================================
-# Set to "ccp" for FHIR-based Clinical Cancer Profile import
-# Set to "demo" for bundled demo data (no external dependencies)
-OVIS_IMPORT_MODE=demo
-
-# ========================================
-# ROUTING / TRAEFIK
-# ========================================
-# Hostname for OVIS access
-HOST=localhost
-
-# Traefik middleware for authentication
-OVIS_AUTH_MIDDLEWARE=traefik-forward-auth
-
-# CORS origin for backend
-OVIS_CORS_ORIGIN=*
-
-# ========================================
-# CORE RUNTIME
-# ========================================
-APOLLO_PORT=4001
-CREDOS_PORT=4000
-DB=onc_test
-MONGO_VER=latest
-
-# Frontend login toggle
-PUBLIC_LOGIN_ENABLED=false
-
-# ========================================
-# CCP IMPORTER / FHIR SOURCE
-# ========================================
-# Only required when OVIS_IMPORT_MODE=ccp
-# FHIR server URL (defaults to Bridgehead CCP Blaze)
-FHIR_SERVER_URL=http://bridgehead-ccp-blaze:8080/fhir
-FHIR_USERNAME=your-fhir-username
-FHIR_PASSWORD=your-fhir-password
-
-# Optional ICD10 filter for CCP import
-ICD10_FILTER=
-
-# ========================================
-# PREPROCESSOR ENDPOINT
-# ========================================
-# URL for uploading omock.json to preprocessing service
-# Uses Bridgehead service name (different from main compose default)
-OVIS_PREPROCESSOR_URL=http://ovis-backend-data-preprocessing:9000/omock
-
-# ========================================
-# FRONTEND RUNTIME
-# ========================================
-# Catalogue upstream URL (uses Bridgehead service name)
-OVIS_CATALOGUE_UPSTREAM_URL=http://ovis-backend-data-preprocessing:9000/catalogue
-
-# Express auth configuration
-EXPRESS_AUTH_URL=http://express-auth:5000
-EXPRESS_AUTH_USERNAME=your-express-username
-EXPRESS_AUTH_PASSWORD=your-express-password
-
-# ========================================
-# PROXY CONFIGURATION (Optional)
-# ========================================
-# Use these only if your server must access the internet through a corporate proxy.
-# Leave all three empty when no proxy is required.
-OVIS_HTTP_PROXY=
-OVIS_HTTPS_PROXY=
-OVIS_NO_PROXY=
-
-# ========================================
-# PREPROCESSOR OVERRIDES (Optional)
-# ========================================
-# These variables customize preprocessing behavior without code changes.
-# See main compose.yaml for detailed documentation of each variable.
-
-# Global / patient status
-OVIS_PREPROC_DECEASED_KEYWORDS=["verstorben","dead","deceased","not alive","gestorben"]
-
-# Rezidiv detection
-OVIS_PREPROC_REZIDIV_PREFIXES=["Rezidiv"]
-OVIS_PREPROC_REZIDIV_CANONICAL=Rezidiv
-OVIS_PREPROC_REZIDIV_LYMPH_STATES=["Rezidiv","Neu"]
-
-# Progress / DFS
-OVIS_PREPROC_PROGRESS_LABELS=["Progression","Divergentes Geschehen","Rezidiv"]
-OVIS_PREPROC_COMPLETE_REMISSION_LABELS=["Vollremission / Tumorfrei (complete remission)"]
-
-# DFS start conditions
-OVIS_PREPROC_RCLASS_SUCCESS=["R0"]
-OVIS_PREPROC_LOCAL_RSTATE_SUCCESS=["R0"]
-
-# Metastasis detection
-OVIS_PREPROC_METASTASIS_PREFIXES=["Rezidiv","Neu"]
-OVIS_PREPROC_METASTASIS_SPREAD_VALUES=["Neu","Rezidiv","Tumornachweis"]
-OVIS_PREPROC_METASTASIS_STRAT_SYNCHRON=Synchrone Metastasierung
-OVIS_PREPROC_METASTASIS_STRAT_NONE=keine synchrone Metastasierung
-
-# Study phases to treat as null
-OVIS_PREPROC_NULL_STUDY_PHASES=["NOPH","KA"]
-
-# Therapy mappings
-OVIS_PREPROC_PREV_THERAPY_SURGERY=["operation"]
-OVIS_PREPROC_PREV_THERAPY_SYSTEMIC=["systemic"]
-OVIS_PREPROC_PREV_THERAPY_RADIATION=["radiation"]
-
-# Consultation mappings
-OVIS_PREPROC_PREV_CONSULTATION_NUTRITION=["nutrition"]
-OVIS_PREPROC_PREV_CONSULTATION_SOCIAL=["social"]
-OVIS_PREPROC_PREV_CONSULTATION_PSYCHO=["psycho"]
-OVIS_PREPROC_PREV_CONSULTATION_GENETIC=["genetic"]
-
-# Tumorboard patterns (regex)
-OVIS_PREPROC_TUMORBOARD_PATTERN_PRAE=prae|prä|pre
-OVIS_PREPROC_TUMORBOARD_PATTERN_POST=post
-OVIS_PREPROC_TUMORBOARD_PATTERN_MTB=mtb
-
-# ECOG and distress
-OVIS_PREPROC_ECOG_PREFIX=ECOG
-OVIS_PREPROC_DISTRESS_TYPE=distress
-OVIS_PREPROC_DISTRESS_POSITIVE_VALUES=["Positiv"]
-
-
 idManagementSetup
 mtbaSetup
 obds2fhirRestSetup