omic test env

itcc/modules/itcc-omics-ingest.yaml

@@ -0,0 +1,15 @@
+services:
+  omics-endpoint:
+    build: .
+    image: samply/itcc-omics-ingest:workflow
+    ports:
+      - "8080:8040"
+    environment:
+      - UPLOAD_DIR=/data/uploads
+    volumes:
+      - ./uploads:/data/uploads
+    labels:
+      - "traefik.http.routers.omics.rule=Host(`${HOST}`) && PathPrefix(`/omics`)"
+      - "traefik.enable=true"
+      - "traefik.http.services.omics.loadbalancer.server.port=8040"
+      - "traefik.http.routers.omics.tls=true"

itcc/modules/lens-compose.yml

@@ -2,7 +2,7 @@ version: "3.7"
 services:
   landing:
     container_name: lens_itcc_explorer
-    image: ghcr.io/samply/itcc-explorer:pr-1
+    image: ghcr.io/samply/itcc-explorer:fix-setup
     environment:
       HOST: "0.0.0.0"
       BIND_ADDR: "0.0.0.0:3000"
@@ -24,6 +24,7 @@ services:
       BEAM_PROXY_ID: ${SITE_ID}
       BEAM_BROKER_ID: ${BROKER_ID}
       BEAM_APP_ID: "focus"
+      # BEAM_APP_ID: "spot.${SITE_ID}.${BROKER_ID}"
       CORS_ORIGIN: "https://${HOST}"
       SITES: ${SITES}
       TRANSFORM: LENS

itcc/vars

@@ -6,6 +6,7 @@ FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
 SUPPORT_EMAIL=arturo.macias@dkfz-heidelberg.de
 PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
 BROKER_URL_FOR_PREREQ=$BROKER_URL
+PUBLIC_ENVIRONMENT=prod
 
 for module in $PROJECT/modules/*.sh
 do