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Experiment

This commit is contained in:
juarez 2023-04-12 15:51:30 +02:00
parent 1904256e6e
commit 9b1b426aff
1 changed files with 43 additions and 24 deletions
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67
ccp/modules/datashield-compose.yml
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@ -2,12 +2,14 @@ version: "3.7"
services: services:
############################################ DataSHIELD Client (Rocker R-Studio) ############################################ DataSHIELD Client (Rocker R-Studio)
bridgehead-rstudio: rstudio:
container_name: bridgehead-rstudio
image: docker.verbis.dkfz.de/ccp/dktk-rstudio:latest image: docker.verbis.dkfz.de/ccp/dktk-rstudio:latest
#TODO: Connect with Keycloak: https://rocker-project.org/images/versioned/rstudio.html #TODO: Connect with Keycloak: https://rocker-project.org/images/versioned/rstudio.html
environment: environment:
USER: "ruser" USER: "ruser"
PASSWORD: "${RSTUDIO_PASSWORD}" PASSWORD: "${RSTUDIO_PASSWORD}"
HTTP_RELATIVE_PATH: "/rstudio"
labels: labels:
- "traefik.enable=true" - "traefik.enable=true"
- "traefik.http.routers.rstudio_ccp.rule=PathPrefix(`/rstudio`)" - "traefik.http.routers.rstudio_ccp.rule=PathPrefix(`/rstudio`)"
@ -16,41 +18,57 @@ services:
- "traefik.http.middlewares.rstudio_ccp_strip.stripprefix.prefixes=/rstudio" - "traefik.http.middlewares.rstudio_ccp_strip.stripprefix.prefixes=/rstudio"
- "traefik.http.routers.rstudio_ccp.middlewares=rstudio_ccp_strip" - "traefik.http.routers.rstudio_ccp.middlewares=rstudio_ccp_strip"
volumes: volumes:
- "bridgehead-dev-rstudio-config:/home/rstudio/.config/rstudio" #- "bridgehead-rstudio-config:/home/rstudio/.config/rstudio"
- "bridgehead-dev-rstudio-workspace:/home/rstudio/workspace" - "bridgehead-rstudio-workspace:/home/rstudio/workspace"
############################################ DataSHIELD Server (Opal) ############################################ DataSHIELD Server (Opal)
bridgehead-opal: opal:
container_name: bridgehead-opal
image: obiba/opal:4.5 image: obiba/opal:4.5
labels: labels:
- "traefik.enable=true" - "traefik.enable=true"
# - "traefik.http.routers.opal_ccp.service=opal_ccp"
- "traefik.http.routers.opal_ccp.rule=PathPrefix(`/opal`)" - "traefik.http.routers.opal_ccp.rule=PathPrefix(`/opal`)"
- "traefik.http.services.opal_ccp.loadbalancer.server.port=8443" - "traefik.http.services.opal_ccp.loadbalancer.server.port=8080"
- "traefik.http.routers.opal_ccp.tls=true" - "traefik.http.routers.opal_ccp.tls=true"
- "traefik.http.middlewares.opal_ccp_strip.stripprefix.prefixes=/opal" # - "traefik.http.routers.opal_ccp.middlewares=opal_ccp_strip"
- "traefik.http.routers.opal_ccp.middlewares=opal_ccp_strip" # - "traefik.http.middlewares.opal_ccp_strip.stripprefix.prefixes=/opal"
# - "traefik.http.routers.opal_ccp2.service=opal_ccp"
# - "traefik.http.routers.opal_ccp2.rule=PathPrefix(`/ws`)"
# - "traefik.http.routers.opal_ccp2.tls=true"
# - "traefik.http.routers.opal_ccp2.middlewares=opal_ccp2_strip"
# - "traefik.http.middlewares.opal_ccp2_strip.stripprefix.prefixes=/ws"
# - "traefik.http.routers.opal_ccp2.middlewares=opal_ccp2_add"
# - "traefik.http.middlewares.opal_ccp2_add.addprefix.prefix=/opal/ws"
links: links:
- bridgehead-opal-rserver - opal-rserver
- bridgehead-opal-mongo - opal-mongo
- bridgehead-opal-db - opal-db
environment: environment:
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC" JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
# OPAL_ADMINISTRATOR_USER: "administrator" # OPAL_ADMINISTRATOR_USER: "administrator"
OPAL_ADMINISTRATOR_PASSWORD: "${OPAL_ADMINISTRATOR_PASSWORD}" OPAL_ADMINISTRATOR_PASSWORD: "${OPAL_ADMINISTRATOR_PASSWORD}"
MONGO_HOST: "bridgehead-opal-mongo" MONGO_HOST: "opal-mongo"
MONGO_PORT: "27017" MONGO_PORT: "27017"
POSTGRESDATA_HOST: "bridgehead-opal-db" POSTGRESDATA_HOST: "opal-db"
POSTGRESDATA_DATABASE: "opal" POSTGRESDATA_DATABASE: "opal"
POSTGRESDATA_USER: "opal" POSTGRESDATA_USER: "opal"
POSTGRESDATA_PASSWORD: "${OPAL_DB_PASSWORD}" POSTGRESDATA_PASSWORD: "${OPAL_DB_PASSWORD}"
ROCK_HOSTS: "bridgehead-opal-rserver:8085" ROCK_HOSTS: "opal-rserver:8085"
volumes: # APP_URL: "https://${HOST}/opal"
- "bridgehead-dev-opal:/srv" # APP_CONTEXT_PATH: "/opal"
bridgehead-opal-mongo: # IDs # volumes:
# - "bridgehead-opal:/srv"
opal-mongo: # IDs
container_name: bridgehead-opal-mongo
image: mongo:4.2 # TODO: Update mongo:6.0.4 image: mongo:4.2 # TODO: Update mongo:6.0.4
bridgehead-opal-db: # Data opal-db: # Data
container_name: bridgehead-opal-db
image: postgres:15.1-alpine image: postgres:15.1-alpine
environment: environment:
POSTGRES_PASSWORD: "${OPAL_DB_PASSWORD}" POSTGRES_PASSWORD: "${OPAL_DB_PASSWORD}"
@ -59,15 +77,16 @@ services:
volumes: volumes:
- "bridgehead-opal-db:/var/lib/postgresql/data" - "bridgehead-opal-db:/var/lib/postgresql/data"
bridgehead-opal-rserver: opal-rserver:
container_name: bridgehead-opal-rserver
image: datashield/rock-base:6.2-R4.2 # https://datashield.discourse.group/t/ds-aggregate-method-error/416/4 image: datashield/rock-base:6.2-R4.2 # https://datashield.discourse.group/t/ds-aggregate-method-error/416/4
volumes: volumes:
bridgehead-dev-rstudio-config: # bridgehead-rstudio-config:
name: "bridgehead-dev-rstudio-config" # name: "bridgehead-rstudio-config"
bridgehead-dev-rstudio-workspace: bridgehead-rstudio-workspace:
name: "bridgehead-dev-rstudio-workspace" name: "bridgehead-rstudio-workspace"
bridgehead-opal-db: bridgehead-opal-db:
name: "bridgehead-opal-db" name: "bridgehead-opal-db"
bridgehead-dev-opal: bridgehead-opal:
name: "bridgehead-dev-opal" name: "bridgehead-opal"