samply
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bridgehead
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Update repos on start 

When Bridgehead is started, make sure that all repositories are up to
date first.
This commit is contained in:
DavidCroftDKFZ 2024-07-12 09:04:08 +02:00
parent 2e8b1dc96c
commit a8a15aaad8
2 changed files with 4 additions and 0 deletions
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2
bridgehead
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@ -89,6 +89,8 @@ case "$ACTION" in
loadVars loadVars
hc_send log "Bridgehead $PROJECT startup: Checking requirements ..." hc_send log "Bridgehead $PROJECT startup: Checking requirements ..."
checkRequirements checkRequirements
# Note: changes to "bridgehead" script will only take effect after next start.
git pull
# Local versions of focus and transfair are needed by EHDS2 # Local versions of focus and transfair are needed by EHDS2
clone_focus_if_nonexistent ${BASE}/.. clone_focus_if_nonexistent ${BASE}/..
build_focus ${BASE}/.. build_focus ${BASE}/..

2
lib/functions.sh
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@ -286,6 +286,7 @@ function build_transfair() {
# 2. There is no data lock file (which means that no ETL has yet been run). # 2. There is no data lock file (which means that no ETL has yet been run).
if ls ../ecdc/data/*.[cC][sS][vV] 1> /dev/null 2>&1 && [ ! -f ../ecdc/data/lock ]; then if ls ../ecdc/data/*.[cC][sS][vV] 1> /dev/null 2>&1 && [ ! -f ../ecdc/data/lock ]; then
cd $base_dir/transfair cd $base_dir/transfair
git pull
docker build --progress=plain -t samply/transfair --no-cache . docker build --progress=plain -t samply/transfair --no-cache .
cd - cd -
fi fi
@ -295,6 +296,7 @@ function build_focus() {
local base_dir="$1" local base_dir="$1"
cd $base_dir/focus cd $base_dir/focus
git pull
docker build --progress=plain -f DockerfileWithBuild -t samply/focus --no-cache . docker build --progress=plain -f DockerfileWithBuild -t samply/focus --no-cache .
cd - cd -
} }