Added MTBA Module

ccp/mtba-compose.yml

@@ -0,0 +1,33 @@
+version: "3.7"
+
+services:
+  mtba:
+    image: samply/mtba:develop
+    container_name: bridgehead-mtba
+    environment:
+      BLAZE_STORE_URL: http://bridgehead-ccp-blaze:8080/fhir
+      # NOTE: Aktuell Berechtigungen wie MagicPL!!!
+      # TODO: Add separate ApiKey to Patientlist only for MTBA!
+      ID_MANAGER_API_KEY: ${IDMANAGER_LOCAL_PATIENTLIST_APIKEY}
+      ID_MANAGER_PSEUDONYM_ID_TYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID
+      ID_MANAGER_URL: http://bridgehead-id-manager:8080
+      PATIENT_CSV_FIRST_NAME_HEADER: ${PATIENT_CSV_FIRST_NAME_HEADER:-"FIRST_NAME"}
+      PATIENT_CSV_LAST_NAME_HEADER: ${PATIENT_CSV_LAST_NAME_HEADER:-"LAST_NAME"}
+      PATIENT_CSV_GENDER_HEADER: ${PATIENT_CSV_GENDER_HEADER:-"GENDER"}
+      PATIENT_CSV_BIRTHDAY_HEADER: ${PATIENT_CSV_BIRTHDAY_HEADER:-"BIRTHDAY"}
+      CBIOPORTAL_URL:  http://bridgehead-ccp-cbioportal:8080
+      MUTATIONS_CSV_SCRIPT_INTERPRETER: "python3"
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.mtba.rule=PathPrefix(`/`)"
+      - "traefik.http.services.mtba.loadbalancer.server.port=80"
+      - "traefik.http.routers.mtba.tls=true"
+    volumes:
+      # This directory persists the FHIR Resources that are needed to import data into blaze.
+      - /var/data/bridgehead/mtba:/app/mtba-files/persist
+      # Place new import files in this directory
+      - /tmp/bridgehead/mtba/:/app/mtba-files/input
+
+  # TODO: Include CBioPortal in Deployment ...
+  # NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted!
+  # TODO: Find a trigger to let mtba signal a restart for CBioPortal

ccp/nngm-setup.sh

@@ -7,3 +7,15 @@ function nngmSetup() {
 	fi
 	CONNECTOR_POSTGRES_PASSWORD="$(echo \"This is a salt string to generate one consistent password. It is not required to be secret.\" | openssl rsautl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
 }
+
+function mtbaSetup() {
+	# TODO: Check if ID-Management Module is activated!
+	if [ -n "$ENABLE_MTBA" ];then
+		log INFO "MTBA setup detected -- will start MTBA Service and CBioPortal."
+		if [ -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
+			log ERROR "Detected MTBA Module configuration but ID-Management Module seems not to be configured!"
+			exit 1;
+		fi
+		OVERRIDE+=" -f ./$PROJECT/mtba-compose.yml"
+	fi
+}

ccp/vars

@@ -16,3 +16,4 @@ source $PROJECT/nngm-setup.sh
 nngmSetup
 source $PROJECT/exliquid-setup.sh
 exliquidSetup
+mtbaSetup