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Improved docker-compose for transFAIR

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In particular, corrected the code for detecting CSV files in the data directory.
The old code could not handle more than one CSV file.
This commit is contained in:
Gerhard Salvini
2024-06-18 15:28:37 +02:00
parent 53cdd49fd7
commit e309dc495a
2 changed files with 4 additions and 4 deletions
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6
bbmri/modules/ehds2-compose.yml
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@ -56,11 +56,11 @@ services:
command: bash -c " \
echo listing /app/data && \
ls -la /app/data && \
[ -f /app/data/*.[cC][sS][vV] ] && \
ls /app/data/*.[cC][sS][vV] 1> /dev/null 2>&1 && \
[ ! -f /app/data/lock ] && \
( \
echo 'Wait for Blaze to finish initializing' ; \
sleep 60 ; \
sleep 300 ; \
echo 'Remove old output files' ; \
rm -rf /app/test/* ; \
cd /app ; \
@ -78,5 +78,5 @@ services:
test-data-loader:
container_name: test-data-loader
image: samply/test-data-loader
command: sh -c "sleep 300 && echo Listing all resources in FHIR store && blazectl --server http://bridgehead-bbmri-blaze:8080/fhir count-resources && tail -f /dev/null"
command: sh -c "sleep 400 && echo Listing all resources in FHIR store && blazectl --server http://bridgehead-bbmri-blaze:8080/fhir count-resources && tail -f /dev/null"