From e9b27c4368fe5a02df17eb44ee34a5d0ac2bd894 Mon Sep 17 00:00:00 2001 From: "p.delpy@dkfz-heidelberg.de" Date: Mon, 2 Jun 2025 10:23:01 +0200 Subject: [PATCH] feature: enable pscc bh within cce project --- cce/modules/pscc-compose.yml | 65 ++++++++++++++++++++++++++++++++++++ cce/modules/pscc-setup.sh | 5 +++ cce/vars | 3 ++ 3 files changed, 73 insertions(+) create mode 100644 cce/modules/pscc-compose.yml create mode 100644 cce/modules/pscc-setup.sh diff --git a/cce/modules/pscc-compose.yml b/cce/modules/pscc-compose.yml new file mode 100644 index 0000000..7c7bb17 --- /dev/null +++ b/cce/modules/pscc-compose.yml @@ -0,0 +1,65 @@ +version: "3.7" + +services: + blaze-pscc: + image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG} + container_name: bridgehead-pscc-blaze + environment: + BASE_URL: "http://bridgehead-pscc-blaze:8080" + JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m" + DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000} + DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP} + CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32} + ENFORCE_REFERENTIAL_INTEGRITY: "false" + volumes: + - "blaze-data-pscc:/app/data" + labels: + - "traefik.enable=true" + - "traefik.http.routers.blaze_pscc.rule=PathPrefix(`/pscc-localdatamanagement`)" + - "traefik.http.middlewares.pscc_b_strip.stripprefix.prefixes=/pscc-localdatamanagement" + - "traefik.http.services.blaze_pscc.loadbalancer.server.port=8080" + - "traefik.http.routers.blaze_pscc.middlewares=pscc_b_strip" + - "traefik.http.routers.blaze_pscc.tls=true" + + focus-pscc: + image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG} + container_name: bridgehead-pscc-focus + environment: + API_KEY: ${FOCUS_BEAM_SECRET_SHORT} + BEAM_APP_ID_LONG: focus.${PROXY_ID_PSCC} + PROXY_ID: ${PROXY_ID_PSCC} + BLAZE_URL: "http://bridgehead-pscc-blaze:8080/fhir/" + BEAM_PROXY_URL: http://beam-proxy-pscc:8081 + RETRY_COUNT: ${FOCUS_RETRY_COUNT} + EPSILON: 0.28 + ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze} + depends_on: + - "beam-proxy" + - "blaze" + + beam-proxy-pscc: + image: docker.verbis.dkfz.de/cache/samply/beam-proxy:${BEAM_TAG} + container_name: bridgehead-pscc-beam-proxy + environment: + BROKER_URL: ${BROKER_URL_PSCC} + PROXY_ID: ${PROXY_ID_PSCC} + APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT} + PRIVKEY_FILE: /run/secrets/proxy.pem + ALL_PROXY: http://forward_proxy:3128 + TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs + ROOTCERT_FILE: /conf/root.crt.pem + secrets: + - proxy.pem + depends_on: + - "forward_proxy" + volumes: + - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro + - /srv/docker/bridgehead/pscc/root.crt.pem:/conf/root.crt.pem:ro + + +volumes: + blaze-data-pscc: + +secrets: + proxy.pem: + file: /etc/bridgehead/pki/${SITE_ID}.priv.pem diff --git a/cce/modules/pscc-setup.sh b/cce/modules/pscc-setup.sh new file mode 100644 index 0000000..5dafbfd --- /dev/null +++ b/cce/modules/pscc-setup.sh @@ -0,0 +1,5 @@ +#!/bin/bash + +if [ -n "$ENABLE_PSCC" ];then + OVERRIDE+=" -f ./$PROJECT/modules/pscc-compose.yml" +fi \ No newline at end of file diff --git a/cce/vars b/cce/vars index 7d0c1a3..5e2b3fc 100644 --- a/cce/vars +++ b/cce/vars @@ -1,6 +1,9 @@ BROKER_ID=test-no-real-data.broker.samply.de +BROKER_ID_PSCC=test-no-real-data.broker.samply.de BROKER_URL=https://${BROKER_ID} +BROKER_URL_PSCC=https://${BROKER_ID} PROXY_ID=${SITE_ID}.${BROKER_ID} +PROXY_ID_PSCC=${SITE_ID}.${BROKER_ID_PSCC} FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)" FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64} SUPPORT_EMAIL=manoj.waikar@dkfz-heidelberg.de