From fbe68bc77847f8a3b02ff7da157272228f36db90 Mon Sep 17 00:00:00 2001 From: DavidCroftDKFZ <46788708+DavidCroftDKFZ@users.noreply.github.com> Date: Wed, 10 Jul 2024 14:18:03 +0200 Subject: [PATCH] Adding more detail to EHDS2-specific installation tasks --- README.md | 14 ++++++++++---- 1 file changed, 10 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index a1b9efd..77702ca 100644 --- a/README.md +++ b/README.md @@ -171,19 +171,25 @@ sudo git clone https://github.com/samply/bridgehead.git /srv/docker/bridgehead If this is an ECDC/EHDS2 installation, switch to the ```ehds2``` branch and copy the configuration file to the required location: ```shell -cd +sudo mkdir -p /srv/docker/ecdc/data +cd /srv/docker git clone https://github.com/samply/transFAIR.git -cd transFAIR +cd /srv/docker/transFAIR +sudo git checkout ehds2 docker build -t samply/transfair --no-cache . +cd /srv/docker +git clone https://github.com/samply/focus.git +cd /srv/docker/focus +sudo git checkout ehds2 +docker build -t samply/focus --no-cache . cd /srv/docker/bridgehead sudo git checkout ehds2 -sudo mkdir test data sudo mkdir -p /etc/bridgehead/ sudo cp bbmri/modules/bbmri.conf /etc/bridgehead/ sudo vi /etc/bridgehead/bbmri.conf # Modify to include national node name and admin contact details ``` -For an ECDC/EHDS2 installation, you will also need to copy your data in a comma-separated value (CSV) formatted file to ```/srv/docker/bridgehead/data```. Make sure it is readable by all. Only files with the ending ```.csv``` will be read in, all other files will be ignored. +For an ECDC/EHDS2 installation, you will also need to copy your data in a comma-separated value (CSV) formatted file to ```/srv/docker/ecdc/data```. Make sure it is readable by all. Only files with the ending ```.csv``` will be read in, all other files will be ignored. If this is not an ECDC/EHDS2 installation, then download your site specific configuration repository: ```shell