Added: Teiler documentation

Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>

README.md

@@ -24,6 +24,9 @@ This repository is the starting point for any information and tools you will nee
     - [BBMRI-ERIC Directory entry needed](#bbmri-eric-directory-entry-needed)
     - [Directory sync tool](#directory-sync-tool)
     - [Loading data](#loading-data)
+    - [Teiler (Frontend)](#teiler-frontend)
+    - [Data Exporter Service](#data-exporter-service)
+      - [Data Quality Report](#data-quality-report)
 4. [Things you should know](#things-you-should-know)
     - [Auto-Updates](#auto-updates)
     - [Auto-Backups](#auto-backups)
@@ -379,6 +382,39 @@ Normally, you will need to build your own ETL to feed the Bridgehead. However, t
 
 You can find the profiles for generating FHIR in [Simplifier](https://simplifier.net/bbmri.de/~resources?category=Profile).
 
+### Teiler (Frontend)
+
+Teiler is the web-based frontend of the Bridgehead, providing access to its various internal, and external services and components.   
+To learn how to integrate your custom module into Teiler, please refer to https://github.com/samply/teiler-dashboard.
+- To activate Teiler, set the following environment variable in your `<PROJECT>.conf` file:  
+
+```bash
+ENABLE_TEILER=true
+```
+[For further information](ccp/modules/teiler.md)  
+
+### Data Exporter Service
+
+The Exporter is a dedicated service for extracting and exporting Bridgehead data in (tabular) formats such as Excel, CSV, Opal, JSON, XML, ...  
+- To enable the Exporter service, set the following environment variable in your `<PROJECT>.conf` file:  
+
+```bash
+ENABLE_EXPORTER=true
+```
+
+#### Data Quality Report
+To assess the quality and plausibility of your imported data, the Reporter component is pre-configured to generate Excel reports with data quality metrics and statistical analyses. Reporter is part of the Exporter and can be enabled by setting the same environment variable in your `<PROJECT>.conf` file:
+```bash
+ENABLE_EXPORTER=true
+```
+
+For convenience, it's recommended to enable the Teiler web frontend alongside the Exporter to access export and quality control features via a web interface: set the following environment varibles in your `<PROJECT>.conf` file:
+```bash
+ENABLE_TEILER=true
+ENABLE_EXPORTER=true
+```
+[For further information](ccp/modules/exporter.md)  
+
 ## Things you should know
 
 ### Auto-Updates

bbmri/modules/eric.acc.root.crt.pem

@@ -1,20 +1,20 @@
 -----BEGIN CERTIFICATE-----
-MIIDNTCCAh2gAwIBAgIUE/wu6FmI+KSMOalI65b+lI3HI4cwDQYJKoZIhvcNAQEL
+MIIDNTCCAh2gAwIBAgIUFzdpDi1OLdXyogtCsktHFhCILtMwDQYJKoZIhvcNAQEL
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+AQEBBQADggEPADCCAQoCggEBALpJCWE9Qe19R9DqotdkPV6jfiuJSKI3UYkCWdWG
-ays24y4R3WO7VJK9UjNduSq/A1jlA0W0A/szDf8Ojq6bBtg+uL92PTDjYH1QXwX0
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-FpC1mYfocXAn20Zu4d603qmc/IqkiOWbp36pWo+jk1AxejyRS9hEpQalgSnvcRPQ
+laewh+qnyZ0WMq12mLV/Rwll6ZuShCx2uAu3UZuIGWk3l7gG5zlws+i+zbaNcn4o
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+3td7JtenXqCX0mN0XSeck7vvFGa6QpcQoVcN9tRENctHZTwyeGA21IkXylpFPUkE
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+LT60k48fNC8TZkBlfvtVGRebpm5krXIKEaVy5LniEpSuOR4hTqsgoQDntBjW4zHA
-8riQJIhY4huX
+GeWQ1wQNTEBX
------END CERTIFICATE-----
+-----END CERTIFICATE-----

bbmri/modules/exporter-compose.yml

@@ -79,10 +79,8 @@ services:
       - "traefik.http.routers.reporter_bbmri.middlewares=reporter_bbmri_strip"
       - "traefik.http.routers.reporter_bbmri.priority=20"
 
-      #- "traefik.http.routers.reporter_bbmri.middlewares=reporter_bbmri_strip,exporter_auth"
       - "traefik.http.routers.reporter_bbmri_api.middlewares=reporter_bbmri_strip,exporter_auth"
       - "traefik.http.routers.reporter_bbmri_api.rule=PathRegexp(`/bbmri-reporter/.+`)"
       - "traefik.http.routers.reporter_bbmri_api.tls=true"
       - "traefik.http.routers.reporter_bbmri_api.priority=25"
-      #- "traefik.http.middlewares.reporter_auth.basicauth.users=${EXPORTER_USER}"
 

bbmri/modules/exporter-setup.sh

@@ -5,11 +5,4 @@ if [ "$ENABLE_EXPORTER" == true ]; then
   OVERRIDE+=" -f ./$PROJECT/modules/exporter-compose.yml"
   EXPORTER_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password for the exporter. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
   EXPORTER_API_KEY="$(echo \"This is a salt string to generate one consistent API KEY for the exporter. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 64)"
-
-  if [ -z "$EXPORTER_USER" ]; then
-    log "INFO" "Now generating basic auth for the exporter and reporter (see adduser in bridgehead for more information). "
-    generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"
-    add_basic_auth_user $PROJECT $generated_passwd "EXPORTER_USER" $PROJECT
-  fi
-
 fi

bbmri/modules/teiler-setup.sh

@@ -5,5 +5,4 @@ if [ "$ENABLE_TEILER" == true ];then
   OVERRIDE+=" -f ./$PROJECT/modules/teiler-compose.yml"
   TEILER_DEFAULT_LANGUAGE=EN
   TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,}
-  # add_public_oidc_redirect_url "/ccp-teiler/*"
 fi

bbmri/vars

@@ -3,7 +3,6 @@ BROKER_URL=https://${BROKER_ID}
 PROXY_ID=${SITE_ID}.${BROKER_ID}
 PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
 BROKER_URL_FOR_PREREQ=$BROKER_URL
-echo $PRIVATEKEYFILENAME
 
 # Makes sense for all European Biobanks
 : ${ENABLE_ERIC:=true}
@@ -13,8 +12,6 @@ echo $PRIVATEKEYFILENAME
 
 FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
 
-POSTGRES_TAG=15.6-alpine
-
 for module in $PROJECT/modules/*.sh
 do
     log DEBUG "sourcing $module"

ccp/modules/teiler.md

@@ -1,19 +1,180 @@
 # Teiler
-This module orchestrates the different microfrontends of the bridgehead as a single page application.  
+
+**Teiler** is the central frontend of the **bridgehead system**. It brings together multiple independent tools—each built as a **microfrontend**—into a single, unified web application.
+
+Users interact with Teiler as one coherent interface, but behind the scenes, it dynamically integrates and displays self-contained modules developed with different technologies (**Angular**, **Vue**, **React**, etc.). This modular approach makes Teiler highly flexible, allowing teams to develop, deploy, and maintain features independently.
+
+Teiler ensures:
+
+* **A consistent look and feel** across tools.
+* **Smooth navigation** between components.
+* **Seamless user authentication** across the entire interface.
+
+Each independent tool integrated into Teiler is called a **bridgehead app**. A bridgehead app can be:
+
+- A fully standalone microfrontend with its own frontend and backend services.
+- An embedded service inside the Teiler Dashboard.
+- An external link to another service, possibly hosted on a central server or elsewhere in the federated research network.
+
+The modularity of Teiler enables it to adapt easily to the evolving needs of the research federated network by simply adding, updating, or removing bridgehead apps.
+
+Below is a breakdown of Teiler's internal components that make this orchestration possible.
+
+- [Teiler Orchestrator](#teiler-orchestrator)  
+- [Teiler Dashboard](#teiler-dashboard)  
+- [Teiler Backend](#teiler-backend)
+
+---
 
 ## Teiler Orchestrator
-Single SPA component that consists on the root HTML site of the single page application and a javascript code that
-gets the information about the microfrontend calling the teiler backend and is responsible for registering them. With the
-resulting mapping, it can initialize, mount and unmount the required microfrontends on the fly. 
 
-The microfrontends run independently in different containers and can be based on different frameworks (Angular, Vue, React,...)
+The **Teiler Orchestrator** is the entry point of the **Single Page Application (SPA)**. It consists of:
-This microfrontends can run as single alone but need an extension with Single-SPA (https://single-spa.js.org/docs/ecosystem).
+
-There are also available three templates (Angular, Vue, React) to be directly extended to be used directly in the teiler.
+- An **HTML root page**.
+- A **JavaScript layer** that:
+  - **Retrieves microfrontend configurations** from the backend.
+  - **Registers and manages** the microfrontends using [**Single-SPA**](https://single-spa.js.org/), the framework Teiler uses to create and coordinate its microfrontend environment.
+
+Using this information, the orchestrator dynamically **loads the correct microfrontend** for a given route and manages its **lifecycle** (*init*, *mount*, *unmount*) in real time.
+
+**Microfrontends** run in their own containers and can be implemented with any major frontend framework. To be compatible with Teiler, they must integrate with **Single-SPA**.
+
+To encourage developers to create their own microfrontends and integrate them into Teiler, we provide **starter templates** for **Angular**, **Vue**, and **React**. Developing a new microfrontend is straightforward:
+
+1. Use one of the templates.
+2. Extend it with your own functionality.
+3. Add its configuration in the **Teiler Backend**.
+
+This modular approach accelerates development and fosters collaboration.
+
+**GitHub repository:** [https://github.com/samply/teiler-orchestrator](https://github.com/samply/teiler-orchestrator)
+
+---
 
 ## Teiler Dashboard
-It consists on the main dashboard and a set of embedded services.
+
-### Login
+The **Teiler Dashboard** is the unified interface users interact with after logging in. It provides:
-user and password in ccp.local.conf
+
+- A **single point of access** where various bridgehead apps are embedded as microfrontends.
+- **Central navigation** and **session management** for a smooth user experience.
+
+### Authentication and Authorization
+
+Teiler uses **OpenID Connect (OIDC)** for user authentication, accessible via the **top navigation bar**.
+
+We consider three possible **application roles**:
+
+| Role   | Description                                               |
+|--------|-----------------------------------------------------------|
+| Public | Accessible by any user without the need to log in         |
+| User   | Normal users working with various bridgehead applications |
+| Admin  | Bridgehead system administrators                           |
+
+It is possible to **deactivate OIDC authentication** entirely. In such cases, **all apps must have at least the public role** to allow access. While this may be suitable for development or testing, we **strongly encourage** at least some external authentication mechanism or network-level access control to secure the bridgehead environment.
+
+Alternatively, basic authentication can be enforced through the existing **Traefik infrastructure** integrated with the bridgehead.
+
+**GitHub repository:** [https://github.com/samply/teiler-dashboard](https://github.com/samply/teiler-dashboard)
+
+---
 
 ## Teiler Backend
-In this component, the microfrontends are configured.
+
+The **Teiler Backend** serves as the central configuration hub for all microfrontends and bridgehead apps. It defines:
+
+- Which bridgehead apps are available.
+- Their loading URLs and routes.
+- Optional metadata such as display names, icons, roles, and activation status.
+
+It enables the orchestrator to remain **generic and flexible**, adapting dynamically to whatever apps are defined in the backend configuration.
+
+### Assets Directory
+
+There is an **assets** directory where you can save images and other static files to be accessible to your microfrontends. This helps configure and customize apps more easily and quickly.
+
+Assets can be referenced via:
+
+```
+<Teiler Backend URL>/assets/<filename>
+```
+
+### App Configuration via Environment Variables
+
+Apps are configured using environment variables with the following structure:
+
+```
+TEILER_APP<Number>_<suffix>
+Optional: TEILER_APP<Number>_<LanguageCode>_<suffix>
+```
+
+- The **number** is just for grouping variables for a single app and has no intrinsic meaning.
+- The **app** is the unit within Teiler, shown as a box in the dashboard.
+- Apps can be:
+  - Embedded apps inside the Teiler Dashboard (there is a helper Python script for generating embedded apps: [create-embedded-app.py](https://github.com/samply/teiler-dashboard/blob/main/create-embedded-app.py))
+  - External links (e.g., central services outside the local bridgehead instance)
+- An app's frontend (microfrontend or embedded app) can either contain the entire functionality or serve as a frontend communicating with other backend microservices in the bridgehead.
+
+Currently supported languages in the main projects DKTK and BBMRI are **English (EN)** and **German (DE)**, but the system can be extended to other languages.
+
+The Teiler Dashboard requests variables from the backend for each app and passes the desired language code. If a language-specific variable is unavailable, the default language value is returned.
+
+### App Availability Monitoring
+
+The Teiler Backend regularly **pings apps** to check availability and displays status messages such as:
+
+- "Frontend not available"
+- "Backend not available"
+- "Frontend and Backend not available"
+
+### Accepted TEILER_APP Variable Suffixes
+
+| Suffix           | Description                                                                                                   |
+|------------------|---------------------------------------------------------------------------------------------------------------|
+| NAME             | Identifier of the app (no spaces). For embedded apps, must match the identifier defined in Teiler Dashboard.  |
+| TITLE            | Display title shown to users.                                                                                  |
+| DESCRIPTION      | Brief description of the app.                                                                                   |
+| BACKENDURL       | URL of the backend microservice (if applicable).                                                              |
+| BACKENDCHECKURL  | URL that the backend pings to verify backend availability. Defaults to BACKENDURL if not specified.             |
+| SOURCEURL        | URL of the microfrontend or external link (not used for embedded apps).                                        |
+| SOURCECHECKURL   | URL to ping to check microfrontend or external link availability. Defaults to SOURCEURL if not specified.       |
+| ROLES            | Comma-separated roles allowed: `TEILER_PUBLIC`, `TEILER_USER`, `TEILER_ADMIN`.                                 |
+| ISACTIVATED      | `true` or `false`. Used to temporarily deactivate an app without deleting its config.                           |
+| ICONCLASS        | Bootstrap icon class to display in app box (e.g., `"bi bi-search"`).                                           |
+| ICONSOURCEURL    | URL to an image icon. Prefer using local assets instead of external URLs.                                       |
+| ORDER            | Relative display order of the app in the dashboard.                                                            |
+| ISEXTERNALLINK   | `true` or `false`. Indicates if the app is an external link outside the local bridgehead.                       |
+| ISLOCAL          | `true` or `false`. Indicates if the app runs locally within the bridgehead site or on a central server.         |
+
+*Note:* Embedded apps often have many of these variables preconfigured and may not require manual specification. See the [Teiler Dashboard documentation](https://github.com/samply/teiler-dashboard) for details.
+
+### Additional Teiler Backend Variables for Dashboard Configuration
+
+| Variable Prefix                    | Description                                                                                                  |
+|------------------------------------|--------------------------------------------------------------------------------------------------------------|
+| TEILER_DASHBOARD_                  | General configuration of the dashboard.                                                                     |
+| TEILER_DASHBOARD_&lt;LangCode&gt;_ | Language-specific configuration overrides.                                                                   |
+
+Important suffixes include:
+
+| Suffix           | Description                                                      |
+|------------------|------------------------------------------------------------------|
+| WELCOME_TITLE    | Title shown on the initial screen before login.                  |
+| WELCOME_TEXT     | Welcome message or instructions before login.                    |
+| FURTHER_INFO     | Additional informational text or links.                          |
+| BACKGROUND_IMAGE_URL | URL to a background image (SVG recommended for scalability).  |
+| LOGO_URL         | URL to the project or bridgehead logo.                           |
+| LOGO_HEIGHT      | Height of the displayed logo.                                    |
+| LOGO_TEXT        | Title text of the bridgehead (e.g., "DKTK Bridgehead").          |
+| COLOR_PALETTE    | JSON link to color palettes for text, lines, icons, and background (especially for SVGs).                   |
+| COLOR_PROFILE    | Selected color profile from the palette.                         |
+| FONT             | Font family for the dashboard text.                             |
+
+---
+
+**GitHub repository:** [https://github.com/samply/teiler-backend](https://github.com/samply/teiler-backend)
+
+---
+
+If you want to create your own bridgehead app and integrate it into Teiler, start by selecting a template or building a microfrontend compatible with **Single-SPA**. Then add your app’s configuration in the Teiler Backend as described above.
+
+This flexible, modular design enables easy expansion

ccp/vars

@@ -11,14 +11,10 @@ BROKER_URL_FOR_PREREQ=$BROKER_URL
 OIDC_USER_GROUP="DKTK_CCP_$(capitalize_first_letter ${SITE_ID})"
 OIDC_ADMIN_GROUP="DKTK_CCP_$(capitalize_first_letter ${SITE_ID})_Verwalter"
 OIDC_PRIVATE_CLIENT_ID=${SITE_ID}-private
-# OIDC_PUBLIC_CLIENT_ID=${SITE_ID}-public
+OIDC_PUBLIC_CLIENT_ID=${SITE_ID}-public
-# OIDC_URL="https://sso.verbis.dkfz.de/application/o/${SITE_ID}/"
+OIDC_URL="https://login.verbis.dkfz.de/realms/test-realm-01"
-OIDC_PUBLIC_CLIENT_ID=bridgehead-test-public
-OIDC_URL="https://sso.verbis.dkfz.de/application/o/bridgehead-test-public/"
 OIDC_GROUP_CLAIM="groups"
 
-POSTGRES_TAG=15.6-alpine
-
 for module in $PROJECT/modules/*.sh
 do
     log DEBUG "sourcing $module"

dhki/vars

@@ -8,8 +8,6 @@ PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
 
 BROKER_URL_FOR_PREREQ=$BROKER_URL
 
-POSTGRES_TAG=15.6-alpine
-
 for module in ccp/modules/*.sh
 do
     log DEBUG "sourcing $module"

lib/functions.sh

@@ -301,34 +301,19 @@ function sync_secrets() {
     if [[ $secret_sync_args == "" ]]; then
         return
     fi
-
-    if [ "$PROJECT" == "bbmri" ]; then
-        # If the project is BBMRI, use the BBMRI-ERIC broker and not the GBN broker
-        proxy_id=$ERIC_PROXY_ID
-        broker_url=$ERIC_BROKER_URL
-        broker_id=$ERIC_BROKER_ID
-        root_crt_file="/srv/docker/bridgehead/bbmri/modules/${ERIC_ROOT_CERT}.root.crt.pem"
-    else
-        proxy_id=$PROXY_ID
-        broker_url=$BROKER_URL
-        broker_id=$BROKER_ID
-        root_crt_file="/srv/docker/bridgehead/$PROJECT/root.crt.pem"
-    fi
-
     mkdir -p /var/cache/bridgehead/secrets/ || fail_and_report 1 "Failed to create '/var/cache/bridgehead/secrets/'. Please run sudo './bridgehead install $PROJECT' again."
     touch /var/cache/bridgehead/secrets/oidc
-    echo $PRIVATEKEYFILENAME
     docker run --rm \
         -v /var/cache/bridgehead/secrets/oidc:/usr/local/cache \
         -v $PRIVATEKEYFILENAME:/run/secrets/privkey.pem:ro \
-        -v $root_crt_file:/run/secrets/root.crt.pem:ro \
+        -v /srv/docker/bridgehead/$PROJECT/root.crt.pem:/run/secrets/root.crt.pem:ro \
         -v /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro \
         -e TLS_CA_CERTIFICATES_DIR=/conf/trusted-ca-certs \
         -e NO_PROXY=localhost,127.0.0.1 \
         -e ALL_PROXY=$HTTPS_PROXY_FULL_URL \
-        -e PROXY_ID=$proxy_id \
+        -e PROXY_ID=$PROXY_ID \
-        -e BROKER_URL=$broker_url \
+        -e BROKER_URL=$BROKER_URL \
-        -e OIDC_PROVIDER=secret-sync-central.central-secret-sync.$broker_id \
+        -e OIDC_PROVIDER=secret-sync-central.central-secret-sync.$BROKER_ID \
         -e SECRET_DEFINITIONS=$secret_sync_args \
         docker.verbis.dkfz.de/cache/samply/secret-sync-local:latest
 

lib/install-bridgehead.sh

@@ -49,6 +49,12 @@ if [ -z "$TRANSFAIR_AUTH" ]; then
   fi
 fi
 
+if [ -z "$EXPORTER_USER" ]; then
+  log "INFO" "Now generating basic auth for the exporter and reporter (see adduser in bridgehead for more information). "
+  generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"
+  add_basic_auth_user $PROJECT $generated_passwd "EXPORTER_USER" $PROJECT
+fi
+
 log "INFO" "Registering system units for bridgehead and bridgehead-update"
 cp -v \
     lib/systemd/bridgehead\@.service \

versions/acceptance

@@ -1,3 +1,4 @@
 FOCUS_TAG=develop
 BEAM_TAG=develop
-BLAZE_TAG=main
+BLAZE_TAG=main
+POSTGRES_TAG=15.13-alpine

versions/prod

@@ -1,3 +1,4 @@
 FOCUS_TAG=main
 BEAM_TAG=main
-BLAZE_TAG=0.32
+BLAZE_TAG=0.32
+POSTGRES_TAG=15.13-alpine

versions/test

@@ -1,3 +1,4 @@
 FOCUS_TAG=develop
 BEAM_TAG=develop
-BLAZE_TAG=main
+BLAZE_TAG=main
+POSTGRES_TAG=15.13-alpine