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38 Commits

Author SHA1 Message Date
dc0d42ca07 Merge pull request #133 from samply/fix/auth_proxy_usage
fix: adjusted the forwarding of env vars to forward proxy
2023-10-26 11:41:06 +02:00
90248b331f fix: adjusted the forwarding of env vars to forward proxy 2023-10-25 15:22:08 +02:00
e693a8f0e6 Merge pull request #132 from samply/fix/proxy-git-update
git requires http proxy config even vor https connections
2023-10-25 11:10:09 +02:00
d16eb6c94d git requires http proxy config even vor https connections 2023-10-25 08:47:02 +00:00
b52d49b4ef Merge pull request #127 from samply/fix/proxy_usage
Added proxy user + pw detection
2023-10-24 19:15:13 +02:00
699d8d6398 fix: git call 2023-10-24 10:42:36 +02:00
7e7d184e8b Merge pull request #131 from samply/feature/adt2fhir-rest
Feature/adt2fhir rest
2023-10-24 09:45:08 +02:00
392afb6410 Fix code 2023-10-24 07:23:24 +00:00
f855a19865 Fix sed (?) 2023-10-24 07:12:18 +00:00
bbfc607104 Always define new vars 2023-10-24 07:07:06 +00:00
f008b18760 Redo proxy, set HTTPS_PROXY_HOST and HTTPS_PROXY_PORT 2023-10-24 07:01:22 +00:00
0555786435 fix bash logic 2023-10-24 07:42:27 +02:00
262b9bd62e add adt2fhir-rest service 2023-10-24 07:30:17 +02:00
e0990d99cb Comment out HTTP proxy parsing 2023-10-23 11:06:59 +00:00
9fc8564e4e Fixed git proxy check 2023-10-20 16:47:15 +02:00
74817a21da Rewrote proxy detection logic to deal with all combinations of no/authenticated/unauthenticated proxy servers 2023-10-20 15:59:24 +02:00
87cc0acecc Corrected Link to Docker Daemon Proxy Configuration (#129) 2023-10-20 14:18:56 +02:00
93026d2d89 Change tag for bridgehead-landingpage 2023-10-20 13:58:46 +02:00
68cd62b981 reaf: var naming for proxy usage in our bridgehead scripts 2023-10-10 10:43:22 +02:00
85446b0a3e Added SECURE_PROXY if the https and http proxy are the same 2023-10-09 09:43:30 +02:00
4bdad68da5 Added proxy user + pw detection 2023-10-05 09:43:57 +02:00
3dadeef786 Merge pull request #125 from samply/urls
readme: Provide URL list for forward proxies
2023-09-27 10:06:48 +02:00
5ca11d1bf5 Update README.md 2023-09-27 10:06:28 +02:00
997c4df5c0 Merge pull request #126 from samply/fix/docker-cache
use docker cache for beam-enroll and vaultfetcher
2023-09-27 09:42:14 +02:00
3c0a994237 use docker cache for beam-enroll and vaultfetcher 2023-09-27 09:22:11 +02:00
377b003207 Refactor, add BBMRI-ERIC gitlab 2023-09-27 09:12:48 +02:00
0c75ac2810 Add healthchecks
Co-authored-by: Torben Brenner <76154651+torbrenner@users.noreply.github.com>
2023-09-27 08:48:45 +02:00
d21c6d7835 Move git/docker proxy config 2023-09-26 13:42:14 +02:00
de10c8508e readme: URL list 2023-09-26 13:25:26 +02:00
b07731442b Merge pull request #121 from samply/chown-message
Fix error messages about wrong permissions
2023-09-25 10:23:50 +02:00
52f6193fde Merge pull request #123 from samply/correct-broker-url
Use GBN Broker for timesync if ERIC is disabled
2023-09-22 09:37:35 +02:00
a4ce7f4eb6 Fix subsitution 2023-09-22 07:35:05 +00:00
49b5cb976a Use GBN Broker for timesync if ERIC is disabled 2023-09-22 07:25:04 +00:00
Jan
50ef08ca6d Merge pull request #122 from samply/check-curl
Check if curl is installed
2023-09-22 08:22:52 +02:00
c354c450f3 Check if curl is installed 2023-09-21 16:23:22 +00:00
6bb0471a64 Merge pull request #120 from samply/maintenance/updatePostgres
Update Postgres from 15.1 to 15.4
2023-09-19 11:34:45 +02:00
2b0cdc0345 Fix error messages about wrong permissions 2023-09-19 11:33:19 +02:00
850a8eb973 chore: update postgres from 15.1 to 15.4 2023-09-18 15:06:00 +02:00
21 changed files with 137 additions and 83 deletions

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@ -51,24 +51,41 @@ Ensure the following software (or newer) is installed:
- docker >= 20.10.1
- docker-compose >= 2.xx (`docker-compose` and `docker compose` are both supported).
- systemd
- curl
We recommend to install Docker(-compose) from its official sources as described on the [Docker website](https://docs.docker.com).
Note for Ubuntu: Please note that snap versions of Docker are not supported.
Note for git and Docker: if you have a local proxy, you will need to adjust your setup appropriately, see [git proxy](https://gist.github.com/evantoli/f8c23a37eb3558ab8765) and [docker proxy](https://docs.docker.com/network/proxy/).
> 📝 Note for Ubuntu: Snap versions of Docker are not supported.
### Network
A running Bridgehead requires an outgoing HTTPS proxy to communicate with the central components.
A Bridgehead communicates to all central components via outgoing HTTPS connections.
Additionally, your site might use its own proxy. You should discuss this with your local systems administration. If a proxy is being used, you will need to note down the URL of the proxy. If it is a secure proxy, then you will also need to make a note of its username and password. This information will be used later on during the installation process.
Your site might require an outgoing proxy (i.e. HTTPS forward proxy) to connect to external servers; you should discuss this with your local systems administration. In that case, you will need to note down the URL of the proxy. If the proxy requires authentication, you will also need to make a note of its username and password. This information will be used later on during the installation process. TLS terminating proxies are also supported, see [here](#tls-terminating-proxies). Apart from the Bridgehead itself, you may also need to configure the proxy server in [git](https://gist.github.com/evantoli/f8c23a37eb3558ab8765) and [docker](https://docs.docker.com/network/proxy/).
Note that git and Docker may also need to be configured to use this proxy. This is a job for your systems administrators.
The following URLs need to be accessible (prefix with `https://`):
* To fetch code and configuration from git repositories
* github.com
* git.verbis.dkfz.de
* To fetch docker images
* docker.verbis.dkfz.de
* Official Docker, Inc. URLs (subject to change, see [official list](https://docs.docker.com/desktop/all))
* hub.docker.com
* registry-1.docker.io
* production.cloudflare.docker.com
* To report bridgeheads operational status
* healthchecks.verbis.dkfz.de
* only for DKTK/CCP
* broker.ccp-it.dktk.dkfz.de
* only for BBMRI-ERIC
* broker.bbmri.samply.de
* gitlab.bbmri-eric.eu
* only for German Biobank Node
* broker.bbmri.de
If there is a site firewall, this needs to be configured so that outgoing calls to the following URLs are allowed: *.dkfz.de, github.com, docker.io, *.docker.io, *.samply.de.
> 📝 This URL list is subject to change. Instead of the individual names, we highly recommend whitelisting wildcard domains: *.dkfz.de, github.com, *.docker.com, *.docker.io, *.samply.de, *.bbmri.de.
Note for Ubuntu: Please note that the uncomplicated firewall (ufw) is known to conflict with Docker [here](https://github.com/chaifeng/ufw-docker).
> 📝 Ubuntu's pre-installed uncomplicated firewall (ufw) is known to conflict with Docker, more info [here](https://github.com/chaifeng/ufw-docker).
## Deployment
@ -337,8 +354,28 @@ Installation under WSL ought to work, but we have not tested this.
### Docker Daemon Proxy Configuration
Docker has a background daemon, responsible for downloading images and starting them. Sometimes, proxy configuration from your system won't carry over and it will fail to download images. In that case, configure the proxy for this daemon as described in the [official documentation](https://docs.docker.com).
Docker has a background daemon, responsible for downloading images and starting them. Sometimes, proxy configuration from your system won't carry over and it will fail to download images. In that case, you'll need to configure the proxy inside the system unit of docker by creating the file `/etc/systemd/system/docker.service.d/proxy.conf` with the following content:
``` ini
[Service]
Environment="HTTP_PROXY=http://proxy.example.com:3128"
Environment="HTTPS_PROXY=https://proxy.example.com:3128"
Environment="NO_PROXY=localhost,127.0.0.1,some-local-docker-registry.example.com,.corp"
```
After saving the configuration file, you'll need to reload the system daemon for the changes to take effect:
``` shell
sudo systemctl daemon-reload
```
and restart the docker daemon:
``` shell
sudo systemctl restart docker
```
For more information, please consult the [official documentation](https://docs.docker.com/config/daemon/systemd/#httphttps-proxy).
### Monitoring

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@ -22,7 +22,6 @@ services:
BROKER_URL: ${ERIC_BROKER_URL}
PROXY_ID: ${ERIC_PROXY_ID}
APP_focus_KEY: ${ERIC_FOCUS_BEAM_SECRET_SHORT}
APP_monitoring_KEY: ${ERIC_MONITORING_BEAM_SECRET_SHORT}
PRIVKEY_FILE: /run/secrets/proxy.pem
ALL_PROXY: http://forward_proxy:3128
TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
@ -35,12 +34,3 @@ services:
- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
- /srv/docker/bridgehead/bbmri/modules/eric.root.crt.pem:/conf/root.crt.pem:ro
bridgehead-monitoring:
image: docker.verbis.dkfz.de/cache/samply/bridgehead-monitoring:latest
container_name: bridgehead-monitoring-eric
environment:
- BEAM_ID=monitoring.${ERIC_PROXY_ID}
- BEAM_API_KEY=${ERIC_MONITORING_BEAM_SECRET_SHORT}
- BEAM_PROXY_URL=http://beam-proxy-eric:8081
depends_on:
- beam-proxy-eric

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@ -10,7 +10,4 @@ if [ "${ENABLE_ERIC}" == "true" ]; then
ERIC_PROXY_ID=${SITE_ID}.${ERIC_BROKER_ID}
ERIC_FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
ERIC_SUPPORT_EMAIL=bridgehead@helpdesk.bbmri-eric.eu
#Monitoring
ERIC_MONITORING_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
fi

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@ -22,7 +22,6 @@ services:
BROKER_URL: ${GBN_BROKER_URL}
PROXY_ID: ${GBN_PROXY_ID}
APP_focus_KEY: ${GBN_FOCUS_BEAM_SECRET_SHORT}
APP_monitoring_KEY: ${GBN_MONITORING_BEAM_SECRET_SHORT}
PRIVKEY_FILE: /run/secrets/proxy.pem
ALL_PROXY: http://forward_proxy:3128
TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
@ -35,13 +34,3 @@ services:
- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
- /srv/docker/bridgehead/bbmri/modules/gbn.root.crt.pem:/conf/root.crt.pem:ro
bridgehead-monitoring:
image: docker.verbis.dkfz.de/cache/samply/bridgehead-monitoring:latest
container_name: bridgehead-monitoring-gbn
environment:
- BEAM_ID=monitoring.${GBN_PROXY_ID}
- BEAM_API_KEY=${GBN_MONITORING_BEAM_SECRET_SHORT}
- BEAM_PROXY_URL=http://beam-proxy-gbn:8081
depends_on:
- beam-proxy-gbn

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@ -10,7 +10,4 @@ if [ "${ENABLE_GBN}" == "true" ]; then
GBN_PROXY_ID=${SITE_ID}.${GBN_BROKER_ID}
GBN_FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
GBN_SUPPORT_EMAIL=feedback@germanbiobanknode.de
#Monitoring
GBN_MONITORING_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
fi

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@ -14,7 +14,7 @@ do
done
SUPPORT_EMAIL=$ERIC_SUPPORT_EMAIL
BROKER_URL_FOR_PREREQ=$ERIC_BROKER_URL
BROKER_URL_FOR_PREREQ="${ERIC_BROKER_URL:-$GBN_BROKER_URL}"
if [ -n "$GBN_SUPPORT_EMAIL" ]; then
SUPPORT_EMAIL=$GBN_SUPPORT_EMAIL
@ -34,4 +34,4 @@ function do_enroll {
echo
echo "You just received $COUNT certificate signing requests (CSR). Please send $COUNT e-mails, with 1 CSR each, to the respective e-mail address."
fi
}
}

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@ -65,6 +65,7 @@ loadVars() {
fi
detectCompose
setHostname
setupProxy
}
case "$ACTION" in

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@ -40,7 +40,6 @@ services:
BROKER_URL: ${BROKER_URL}
PROXY_ID: ${PROXY_ID}
APP_focus_KEY: ${FOCUS_BEAM_SECRET_SHORT}
APP_monitoring_KEY: ${CCP_MONITORING_BEAM_SECRET_SHORT}
PRIVKEY_FILE: /run/secrets/proxy.pem
ALL_PROXY: http://forward_proxy:3128
TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
@ -52,16 +51,6 @@ services:
volumes:
- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
- /srv/docker/bridgehead/ccp/root.crt.pem:/conf/root.crt.pem:ro
bridgehead-monitoring:
image: docker.verbis.dkfz.de/cache/samply/bridgehead-monitoring:latest
container_name: bridgehead-monitoring-ccp
environment:
- BEAM_ID=monitoring.${PROXY_ID}
- BEAM_API_KEY=${CCP_MONITORING_BEAM_SECRET_SHORT}
- BEAM_PROXY_URL=http://beam-proxy:8081
depends_on:
- beam-proxy
volumes:

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@ -0,0 +1,18 @@
version: "3.7"
services:
adt2fhir-rest:
container_name: bridgehead-adt2fhir-rest
image: docker.verbis.dkfz.de/ccp/adt2fhir-rest:main
environment:
IDTYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID
MAINZELLISTE_APIKEY: ${IDMANAGER_LOCAL_PATIENTLIST_APIKEY}
SALT: ${LOCAL_SALT}
restart: always
labels:
- "traefik.enable=true"
- "traefik.http.routers.adt2fhir-rest.rule=PathPrefix(`/adt2fhir-rest`)"
- "traefik.http.middlewares.adt2fhir-rest_strip.stripprefix.prefixes=/adt2fhir-rest"
- "traefik.http.services.adt2fhir-rest.loadbalancer.server.port=8080"
- "traefik.http.routers.adt2fhir-rest.tls=true"
- "traefik.http.routers.adt2fhir-rest.middlewares=adt2fhir-rest_strip,auth"

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@ -0,0 +1,13 @@
#!/bin/bash
function adt2fhirRestSetup() {
if [ -n "$ENABLE_ADT2FHIR_REST" ]; then
log INFO "ADT2FHIR-REST setup detected -- will start adt2fhir-rest API."
if [ ! -n "$IDMANAGER_LOCAL_PATIENTLIST_APIKEY" ]; then
log ERROR "Missing ID-Management Module! Fix this by setting up ID Management:"
exit 1;
fi
OVERRIDE+=" -f ./$PROJECT/modules/adt2fhir-rest-compose.yml"
LOCAL_SALT="$(echo \"local-random-salt\" | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
fi
}

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@ -1,2 +0,0 @@
#Monitoring
CCP_MONITORING_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"

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@ -43,7 +43,7 @@ services:
- patientlist-db
patientlist-db:
image: docker.verbis.dkfz.de/cache/postgres:15.1-alpine
image: docker.verbis.dkfz.de/cache/postgres:15.4-alpine
container_name: bridgehead-patientlist-db
environment:
POSTGRES_USER: "mainzelliste"

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@ -39,6 +39,7 @@ function applySpecialCases() {
result="$1";
result="${result/Lmu/LMU}";
result="${result/Tum/TUM}";
result="${result/Dktk Test/Teststandort}";
echo "$result";
}

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@ -1,13 +1,12 @@
#!/bin/bash
function mtbaSetup() {
# TODO: Check if ID-Management Module is activated!
if [ -n "$ENABLE_MTBA" ];then
log INFO "MTBA setup detected -- will start MTBA Service and CBioPortal."
if [ ! -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
log ERROR "Detected MTBA Module configuration but ID-Management Module seems not to be configured!"
exit 1;
fi
OVERRIDE+=" -f ./$PROJECT/modules/mtba-compose.yml"
fi
if [ -n "$ENABLE_MTBA" ];then
log INFO "MTBA setup detected -- will start MTBA Service and CBioPortal."
if [ ! -n "$IDMANAGER_UPLOAD_APIKEY" ]; then
log ERROR "Missing ID-Management Module! Fix this by setting up ID Management:"
exit 1;
fi
OVERRIDE+=" -f ./$PROJECT/modules/mtba-compose.yml"
fi
}

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@ -1,8 +1,6 @@
#!/bin/bash
function nngmSetup() {
if [ -n "$NNGM_CTS_APIKEY" ]; then
log INFO "nNGM setup detected -- will start nNGM Connector."
OVERRIDE+=" -f ./$PROJECT/modules/nngm-compose.yml"
fi
}
if [ -n "$NNGM_CTS_APIKEY" ]; then
log INFO "nNGM setup detected -- will start nNGM Connector."
OVERRIDE+=" -f ./$PROJECT/modules/nngm-compose.yml"
fi

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@ -16,5 +16,5 @@ do
done
idManagementSetup
nngmSetup
mtbaSetup
mtbaSetup
adt2fhirRestSetup

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@ -9,6 +9,33 @@ detectCompose() {
fi
}
setupProxy() {
### Note: As the current data protection concepts do not allow communication via HTTP,
### we are not setting a proxy for HTTP requests.
local http="no"
local https="no"
if [ $HTTPS_PROXY_URL ]; then
local proto="$(echo $HTTPS_PROXY_URL | grep :// | sed -e 's,^\(.*://\).*,\1,g')"
local fqdn="$(echo ${HTTPS_PROXY_URL/$proto/})"
local hostport=$(echo $HTTPS_PROXY_URL | sed -e "s,$proto,,g" | cut -d/ -f1)
HTTPS_PROXY_HOST="$(echo $hostport | sed -e 's,:.*,,g')"
HTTPS_PROXY_PORT="$(echo $hostport | sed -e 's,^.*:,:,g' -e 's,.*:\([0-9]*\).*,\1,g' -e 's,[^0-9],,g')"
if [[ ! -z "$HTTPS_PROXY_USERNAME" && ! -z "$HTTPS_PROXY_PASSWORD" ]]; then
local proto="$(echo $HTTPS_PROXY_URL | grep :// | sed -e 's,^\(.*://\).*,\1,g')"
local fqdn="$(echo ${HTTPS_PROXY_URL/$proto/})"
HTTPS_PROXY_FULL_URL="$(echo $proto$HTTPS_PROXY_USERNAME:$HTTPS_PROXY_PASSWORD@$fqdn)"
https="authenticated"
else
HTTPS_PROXY_FULL_URL=$HTTPS_PROXY_URL
https="unauthenticated"
fi
fi
log INFO "Configuring proxy servers: $http http proxy (we're not supporting unencrypted comms), $https https proxy"
export HTTPS_PROXY_HOST HTTPS_PROXY_PORT HTTPS_PROXY_FULL_URL
}
exitIfNotRoot() {
if [ "$EUID" -ne 0 ]; then
log "ERROR" "Please run as root"
@ -49,7 +76,7 @@ fetchVarsFromVault() {
set +e
PASS=$(BW_MASTERPASS="$BW_MASTERPASS" BW_CLIENTID="$BW_CLIENTID" BW_CLIENTSECRET="$BW_CLIENTSECRET" docker run --rm -e BW_MASTERPASS -e BW_CLIENTID -e BW_CLIENTSECRET -e http_proxy samply/bridgehead-vaultfetcher $@)
PASS=$(BW_MASTERPASS="$BW_MASTERPASS" BW_CLIENTID="$BW_CLIENTID" BW_CLIENTSECRET="$BW_CLIENTSECRET" docker run --rm -e BW_MASTERPASS -e BW_CLIENTID -e BW_CLIENTSECRET -e http_proxy docker.verbis.dkfz.de/cache/samply/bridgehead-vaultfetcher:latest $@)
RET=$?
if [ $RET -ne 0 ]; then
@ -188,7 +215,7 @@ function do_enroll_inner {
PARAMS+="--admin-email $SUPPORT_EMAIL"
fi
docker run --rm -v /etc/bridgehead/pki:/etc/bridgehead/pki samply/beam-enroll:latest --output-file $PRIVATEKEYFILENAME --proxy-id $MANUAL_PROXY_ID $PARAMS
docker run --rm -v /etc/bridgehead/pki:/etc/bridgehead/pki docker.verbis.dkfz.de/cache/samply/beam-enroll:latest --output-file $PRIVATEKEYFILENAME --proxy-id $MANUAL_PROXY_ID $PARAMS
chmod 600 $PRIVATEKEYFILENAME
}

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@ -47,8 +47,8 @@ function hc_send(){
if [ -n "$2" ]; then
MSG="$2\n\nDocker stats:\n$UPTIME"
echo -e "$MSG" | https_proxy=$HTTPS_PROXY_URL curl --max-time 5 -A "$USER_AGENT" -s -o /dev/null -X POST --data-binary @- "$HCURL"/"$1" || log WARN "Monitoring failed: Unable to send data to $HCURL/$1"
echo -e "$MSG" | https_proxy=$HTTPS_PROXY_FULL_URL curl --max-time 5 -A "$USER_AGENT" -s -o /dev/null -X POST --data-binary @- "$HCURL"/"$1" || log WARN "Monitoring failed: Unable to send data to $HCURL/$1"
else
https_proxy=$HTTPS_PROXY_URL curl --max-time 5 -A "$USER_AGENT" -s -o /dev/null "$HCURL"/"$1" || log WARN "Monitoring failed: Unable to send data to $HCURL/$1"
https_proxy=$HTTPS_PROXY_FULL_URL curl --max-time 5 -A "$USER_AGENT" -s -o /dev/null "$HCURL"/"$1" || log WARN "Monitoring failed: Unable to send data to $HCURL/$1"
fi
}

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@ -14,7 +14,7 @@ checkOwner /etc/bridgehead bridgehead || exit 1
## Check if user is a su
log INFO "Checking if all prerequisites are met ..."
prerequisites="git docker"
prerequisites="git docker curl"
for prerequisite in $prerequisites; do
$prerequisite --version 2>&1
is_available=$?
@ -68,7 +68,7 @@ source /etc/bridgehead/${PROJECT}.conf
source ${PROJECT}/vars
set +e
SERVERTIME="$(https_proxy=$HTTPS_PROXY_URL curl -m 5 -s -I $BROKER_URL_FOR_PREREQ 2>&1 | grep -i -e '^Date: ' | sed -e 's/^Date: //i')"
SERVERTIME="$(https_proxy=$HTTPS_PROXY_FULL_URL curl -m 5 -s -I $BROKER_URL_FOR_PREREQ 2>&1 | grep -i -e '^Date: ' | sed -e 's/^Date: //i')"
RET=$?
set -e
if [ $RET -ne 0 ]; then

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@ -30,7 +30,7 @@ source $CONFFILE
assertVarsNotEmpty SITE_ID || fail_and_report 1 "Update failed: SITE_ID empty"
export SITE_ID
checkOwner . bridgehead || fail_and_report 1 "Update failed: Wrong permissions in $(pwd)"
checkOwner /srv/docker/bridgehead bridgehead || fail_and_report 1 "Update failed: Wrong permissions in /srv/docker/bridgehead"
checkOwner /etc/bridgehead bridgehead || fail_and_report 1 "Update failed: Wrong permissions in /etc/bridgehead"
CREDHELPER="/srv/docker/bridgehead/lib/gitpassword.sh"
@ -50,12 +50,12 @@ for DIR in /etc/bridgehead $(pwd); do
git -C $DIR config credential.helper "$CREDHELPER"
fi
old_git_hash="$(git -C $DIR rev-parse --verify HEAD)"
if [ -z "$HTTP_PROXY_URL" ]; then
if [ -z "$HTTPS_PROXY_FULL_URL" ]; then
log "INFO" "Git is using no proxy!"
OUT=$(retry 5 git -C $DIR fetch 2>&1 && retry 5 git -C $DIR pull 2>&1)
else
log "INFO" "Git is using proxy ${HTTP_PROXY_URL} from ${CONFFILE}"
OUT=$(retry 5 git -c http.proxy=$HTTP_PROXY_URL -c https.proxy=$HTTPS_PROXY_URL -C $DIR fetch 2>&1 && retry 5 git -c http.proxy=$HTTP_PROXY_URL -c https.proxy=$HTTPS_PROXY_URL -C $DIR pull 2>&1)
log "INFO" "Git is using proxy ${HTTPS_PROXY_URL} from ${CONFFILE}"
OUT=$(retry 5 git -c http.proxy=$HTTPS_PROXY_FULL_URL -c https.proxy=$HTTPS_PROXY_FULL_URL -C $DIR fetch 2>&1 && retry 5 git -c http.proxy=$HTTPS_PROXY_FULL_URL -c https.proxy=$HTTPS_PROXY_FULL_URL -C $DIR pull 2>&1)
fi
if [ $? -ne 0 ]; then
report_error log "Unable to update git $DIR: $OUT"
@ -116,7 +116,7 @@ if [ -n "${BACKUP_DIRECTORY}" ]; then
mkdir -p "$BACKUP_DIRECTORY"
chown -R "$BACKUP_DIRECTORY" bridgehead;
fi
checkOwner "$BACKUP_DIRECTORY" bridgehead || fail_and_report 1 "Automatic maintenance failed: Wrong permissions for backup directory $(pwd)"
checkOwner "$BACKUP_DIRECTORY" bridgehead || fail_and_report 1 "Automatic maintenance failed: Wrong permissions for backup directory $BACKUP_DIRECTORY"
# Collect all container names that contain '-db'
BACKUP_SERVICES="$(docker ps --filter name=-db --format "{{.Names}}" | tr "\n" "\ ")"
log INFO "Performing automatic maintenance: Creating Backups for $BACKUP_SERVICES";

View File

@ -35,8 +35,8 @@ services:
image: docker.verbis.dkfz.de/cache/samply/bridgehead-forward-proxy:latest
environment:
HTTPS_PROXY: ${HTTPS_PROXY_URL}
USERNAME: ${HTTPS_PROXY_USERNAME}
PASSWORD: ${HTTPS_PROXY_PASSWORD}
HTTPS_PROXY_USERNAME: ${HTTPS_PROXY_USERNAME}
HTTPS_PROXY_PASSWORD: ${HTTPS_PROXY_PASSWORD}
tmpfs:
- /var/log/squid
- /var/spool/squid
@ -45,7 +45,7 @@ services:
landing:
container_name: bridgehead-landingpage
image: docker.verbis.dkfz.de/cache/samply/bridgehead-landingpage:master
image: docker.verbis.dkfz.de/cache/samply/bridgehead-landingpage:main
labels:
- "traefik.enable=true"
- "traefik.http.routers.landing.rule=PathPrefix(`/`)"