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16 Commits

Author SHA1 Message Date
d33cfd98b4 no need for this, minimal is executed 2024-12-12 15:08:37 +01:00
7fa5a24d62 platform project unification 2024-12-12 14:56:13 +01:00
a66e6aebaa unified PLATFORM and PROJECT 2024-12-12 14:43:24 +01:00
3aa34e58e0 fix 2024-12-12 14:34:21 +01:00
044e190be3 QR basic auth; teiler, exporter, reporter -> min 2024-12-12 14:09:29 +01:00
63274a4aba Test docker image for bbmri teiler-dashboard 2024-10-30 13:04:43 +01:00
183e9c7e69 Test image 2024-10-30 12:04:20 +01:00
cfa0709e17 Added: Exporter and Teiler for BBMRI 2024-10-30 11:58:27 +01:00
77e4cc53c6 fix for the fix of the fix 2024-10-17 15:35:01 +02:00
9cf6538568 some more adjustments 2024-10-17 15:32:10 +02:00
51743b77e7 fix: add postgres tag version 2024-10-17 15:24:27 +02:00
5ea782c90c breakmorestuff: hardcoded ccp in modules 2024-10-17 15:23:04 +02:00
1d3c398370 fix: disable secret sync for now 2024-10-17 15:15:23 +02:00
5a0a804486 fix: added variables for secret sync 2024-10-17 15:08:50 +02:00
a899588f15 feat: enable exporter and teiler module in bbmri 2024-10-17 14:54:47 +02:00
7aaee5e7d5 feat: add auto archiving action (#238)
* feat: add auto archiving action

---------

Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>
Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>
2024-10-15 13:03:42 +02:00
16 changed files with 208 additions and 109 deletions

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@ -0,0 +1,39 @@
import os
import requests
from datetime import datetime, timedelta
# Configuration
GITHUB_TOKEN = os.getenv('GITHUB_TOKEN')
REPO = 'samply/bridgehead'
HEADERS = {'Authorization': f'token {GITHUB_TOKEN}', 'Accept': 'application/vnd.github.v3+json'}
API_URL = f'https://api.github.com/repos/{REPO}/branches'
INACTIVE_DAYS = 365
CUTOFF_DATE = datetime.now() - timedelta(days=INACTIVE_DAYS)
# Fetch all branches
def get_branches():
response = requests.get(API_URL, headers=HEADERS)
response.raise_for_status()
return response.json() if response.status_code == 200 else []
# Rename inactive branches
def rename_branch(old_name, new_name):
rename_url = f'https://api.github.com/repos/{REPO}/branches/{old_name}/rename'
response = requests.post(rename_url, json={'new_name': new_name}, headers=HEADERS)
response.raise_for_status()
print(f"Renamed branch {old_name} to {new_name}" if response.status_code == 201 else f"Failed to rename {old_name}: {response.status_code}")
# Check if the branch is inactive
def is_inactive(commit_url):
last_commit_date = requests.get(commit_url, headers=HEADERS).json()['commit']['committer']['date']
return datetime.strptime(last_commit_date, '%Y-%m-%dT%H:%M:%SZ') < CUTOFF_DATE
# Rename inactive branches
def main():
for branch in get_branches():
if is_inactive(branch['commit']['url']):
#rename_branch(branch['name'], f"archived/{branch['name']}")
print(f"[LOG] Branch '{branch['name']}' is inactive and would be renamed to 'archived/{branch['name']}'")
if __name__ == "__main__":
main()

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@ -0,0 +1,27 @@
name: Cleanup - Rename Inactive Branches
on:
schedule:
- cron: '0 0 * * 0' # Runs every Sunday at midnight
jobs:
archive-stale-branches:
runs-on: ubuntu-latest
steps:
- name: Checkout Repository
uses: actions/checkout@v2
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: '3.x'
- name: Install Libraries
run: pip install requests
- name: Run Script to Rename Inactive Branches
run: |
python .github/scripts/rename_inactive_branches.py
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

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@ -1,3 +1,21 @@
BROKER_ID=broker-test.bbmri-test.samply.de
BROKER_URL=https://${BROKER_ID}
PROXY_ID=${SITE_ID}.${BROKER_ID}
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
BROKER_URL_FOR_PREREQ=$BROKER_URL
OIDC_USER_GROUP="BBMRI_$(capitalize_first_letter ${SITE_ID})"
OIDC_ADMIN_GROUP="BBMRI_$(capitalize_first_letter ${SITE_ID})_Verwalter"
OIDC_PUBLIC_CLIENT_ID="BBMRI_${SITE_ID}-public"
# Use "test-realm-01" for testing
OIDC_REALM="${OIDC_REALM:-test-realm-01}"
OIDC_URL="https://login.verbis.dkfz.de"
OIDC_ISSUER_URL="${OIDC_URL}/realms/${OIDC_REALM}"
OIDC_GROUP_CLAIM="groups"
POSTGRES_TAG=15.6-alpine
# Makes sense for all European Biobanks # Makes sense for all European Biobanks
: ${ENABLE_ERIC:=true} : ${ENABLE_ERIC:=true}
@ -13,6 +31,7 @@ do
source $module source $module
done done
SUPPORT_EMAIL=$ERIC_SUPPORT_EMAIL SUPPORT_EMAIL=$ERIC_SUPPORT_EMAIL
BROKER_URL_FOR_PREREQ="${ERIC_BROKER_URL:-$GBN_BROKER_URL}" BROKER_URL_FOR_PREREQ="${ERIC_BROKER_URL:-$GBN_BROKER_URL}"

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@ -106,7 +106,8 @@ case "$ACTION" in
loadVars loadVars
hc_send log "Bridgehead $PROJECT startup: Checking requirements ..." hc_send log "Bridgehead $PROJECT startup: Checking requirements ..."
checkRequirements checkRequirements
sync_secrets # NOTE: for testing only, we will need to properly setup secret sync if we want to use this code
# sync_secrets
hc_send log "Bridgehead $PROJECT startup: Requirements checked out. Now starting bridgehead ..." hc_send log "Bridgehead $PROJECT startup: Requirements checked out. Now starting bridgehead ..."
exec $COMPOSE -p $PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE up --abort-on-container-exit exec $COMPOSE -p $PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE up --abort-on-container-exit
;; ;;

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@ -1,6 +0,0 @@
# Full Excel Export
curl --location --request POST 'https://${HOST}/ccp-exporter/request?query=Patient&query-format=FHIR_PATH&template-id=ccp&output-format=EXCEL' \
--header 'x-api-key: ${EXPORT_API_KEY}'
# QB
curl --location --request POST 'https://${HOST}/ccp-reporter/generate?template-id=ccp'

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@ -1,81 +0,0 @@
version: "3.7"
services:
teiler-orchestrator:
image: docker.verbis.dkfz.de/cache/samply/teiler-orchestrator:latest
container_name: bridgehead-teiler-orchestrator
labels:
- "traefik.enable=true"
- "traefik.http.routers.teiler_orchestrator_ccp.rule=PathPrefix(`/ccp-teiler`)"
- "traefik.http.services.teiler_orchestrator_ccp.loadbalancer.server.port=9000"
- "traefik.http.routers.teiler_orchestrator_ccp.tls=true"
- "traefik.http.middlewares.teiler_orchestrator_ccp_strip.stripprefix.prefixes=/ccp-teiler"
- "traefik.http.routers.teiler_orchestrator_ccp.middlewares=teiler_orchestrator_ccp_strip"
environment:
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
HTTP_RELATIVE_PATH: "/ccp-teiler"
teiler-dashboard:
image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
container_name: bridgehead-teiler-dashboard
labels:
- "traefik.enable=true"
- "traefik.http.routers.teiler_dashboard_ccp.rule=PathPrefix(`/ccp-teiler-dashboard`)"
- "traefik.http.services.teiler_dashboard_ccp.loadbalancer.server.port=80"
- "traefik.http.routers.teiler_dashboard_ccp.tls=true"
- "traefik.http.middlewares.teiler_dashboard_ccp_strip.stripprefix.prefixes=/ccp-teiler-dashboard"
- "traefik.http.routers.teiler_dashboard_ccp.middlewares=teiler_dashboard_ccp_strip"
environment:
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
OIDC_URL: "${OIDC_URL}"
OIDC_REALM: "${OIDC_REALM}"
OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
TEILER_ADMIN_NAME: "${OPERATOR_FIRST_NAME} ${OPERATOR_LAST_NAME}"
TEILER_ADMIN_EMAIL: "${OPERATOR_EMAIL}"
TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
TEILER_PROJECT: "${PROJECT}"
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/ccp-teiler-dashboard"
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
TEILER_USER: "${OIDC_USER_GROUP}"
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
REPORTER_DEFAULT_TEMPLATE_ID: "ccp-qb"
EXPORTER_DEFAULT_TEMPLATE_ID: "ccp"
teiler-backend:
image: docker.verbis.dkfz.de/ccp/dktk-teiler-backend:latest
container_name: bridgehead-teiler-backend
labels:
- "traefik.enable=true"
- "traefik.http.routers.teiler_backend_ccp.rule=PathPrefix(`/ccp-teiler-backend`)"
- "traefik.http.services.teiler_backend_ccp.loadbalancer.server.port=8085"
- "traefik.http.routers.teiler_backend_ccp.tls=true"
- "traefik.http.middlewares.teiler_backend_ccp_strip.stripprefix.prefixes=/ccp-teiler-backend"
- "traefik.http.routers.teiler_backend_ccp.middlewares=teiler_backend_ccp_strip"
environment:
LOG_LEVEL: "INFO"
APPLICATION_PORT: "8085"
APPLICATION_ADDRESS: "${HOST}"
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
CONFIG_ENV_VAR_PATH: "/run/secrets/ccp.conf"
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
TEILER_DASHBOARD_DE_URL: "https://${HOST}/ccp-teiler-dashboard/de"
TEILER_DASHBOARD_EN_URL: "https://${HOST}/ccp-teiler-dashboard/en"
CENTRAX_URL: "${CENTRAXX_URL}"
HTTP_PROXY: "http://forward_proxy:3128"
ENABLE_MTBA: "${ENABLE_MTBA}"
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
secrets:
- ccp.conf
secrets:
ccp.conf:
file: /etc/bridgehead/ccp.conf

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@ -5,6 +5,7 @@ FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | h
FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64} FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
PLATFORM=ccp
BROKER_URL_FOR_PREREQ=$BROKER_URL BROKER_URL_FOR_PREREQ=$BROKER_URL

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@ -35,6 +35,12 @@ if [ -z "$LDM_AUTH" ]; then
add_basic_auth_user $PROJECT $generated_passwd "LDM_AUTH" $PROJECT add_basic_auth_user $PROJECT $generated_passwd "LDM_AUTH" $PROJECT
fi fi
if [ "$ENABLE_EXPORTER" == true ]; then
log "INFO" "Now generating basic auth for the quality reports. "
generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"
add_basic_auth_user $PROJECT $generated_passwd "QR_AUTH" $PROJECT
fi
if [ ! -z "$NNGM_CTS_APIKEY" ] && [ -z "$NNGM_AUTH" ]; then if [ ! -z "$NNGM_CTS_APIKEY" ] && [ -z "$NNGM_AUTH" ]; then
log "INFO" "Now generating basic auth for nNGM upload API (see adduser in bridgehead for more information). " log "INFO" "Now generating basic auth for nNGM upload API (see adduser in bridgehead for more information). "
generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)" generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"

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@ -21,7 +21,6 @@ services:
- "traefik.http.routers.dashboard.service=api@internal" - "traefik.http.routers.dashboard.service=api@internal"
- "traefik.http.routers.dashboard.tls=true" - "traefik.http.routers.dashboard.tls=true"
- "traefik.http.routers.dashboard.middlewares=auth" - "traefik.http.routers.dashboard.middlewares=auth"
- "traefik.http.middlewares.auth.basicauth.users=${LDM_AUTH}"
ports: ports:
- 80:80 - 80:80
- 443:443 - 443:443

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@ -0,0 +1,6 @@
# Full Excel Export
curl --location --request POST 'https://${HOST}/${PROJECT}-exporter/request?query=Patient&query-format=FHIR_PATH&template-id=${PROJECT}&output-format=EXCEL' \
--header 'x-api-key: ${EXPORT_API_KEY}'
# QB
curl --location --request POST 'https://${HOST}/${PROJECT}-reporter/generate?template-id=${PROJECT}'

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@ -3,7 +3,7 @@ version: "3.7"
services: services:
exporter: exporter:
image: docker.verbis.dkfz.de/ccp/dktk-exporter:latest image: docker.verbis.dkfz.de/ccp/dktk-exporter:latest
container_name: bridgehead-ccp-exporter container_name: bridgehead-${PROJECT}-exporter
environment: environment:
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC" JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
LOG_LEVEL: "INFO" LOG_LEVEL: "INFO"
@ -12,39 +12,41 @@ services:
EXPORTER_DB_USER: "exporter" EXPORTER_DB_USER: "exporter"
EXPORTER_DB_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh EXPORTER_DB_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
EXPORTER_DB_URL: "jdbc:postgresql://exporter-db:5432/exporter" EXPORTER_DB_URL: "jdbc:postgresql://exporter-db:5432/exporter"
HTTP_RELATIVE_PATH: "/ccp-exporter" HTTP_RELATIVE_PATH: "/${PROJECT}-exporter"
SITE: "${SITE_ID}" SITE: "${SITE_ID}"
HTTP_SERVLET_REQUEST_SCHEME: "https" HTTP_SERVLET_REQUEST_SCHEME: "https"
OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}" OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
labels: labels:
- "traefik.enable=true" - "traefik.enable=true"
- "traefik.http.routers.exporter_ccp.rule=PathPrefix(`/ccp-exporter`)" - "traefik.http.routers.exporter_${PROJECT}.rule=PathPrefix(`/${PROJECT}-exporter`)"
- "traefik.http.services.exporter_ccp.loadbalancer.server.port=8092" - "traefik.http.services.exporter_${PROJECT}.loadbalancer.server.port=8092"
- "traefik.http.routers.exporter_ccp.tls=true" - "traefik.http.routers.exporter_${PROJECT}.tls=true"
- "traefik.http.middlewares.exporter_ccp_strip.stripprefix.prefixes=/ccp-exporter" - "traefik.http.middlewares.exporter_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-exporter"
- "traefik.http.routers.exporter_ccp.middlewares=exporter_ccp_strip" - "traefik.http.routers.exporter_${PROJECT}.middlewares=exporter_${PROJECT}_strip"
- "traefik.http.routers.connector.middlewares=connector_strip,auth-qr"
volumes: volumes:
- "/var/cache/bridgehead/ccp/exporter-files:/app/exporter-files/output" - "/var/cache/bridgehead/${PROJECT}/exporter-files:/app/exporter-files/output"
exporter-db: exporter-db:
image: docker.verbis.dkfz.de/cache/postgres:${POSTGRES_TAG} image: docker.verbis.dkfz.de/cache/postgres:${POSTGRES_TAG}
container_name: bridgehead-ccp-exporter-db container_name: bridgehead-${PROJECT}-exporter-db
environment: environment:
POSTGRES_USER: "exporter" POSTGRES_USER: "exporter"
POSTGRES_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh POSTGRES_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
POSTGRES_DB: "exporter" POSTGRES_DB: "exporter"
volumes: volumes:
# Consider removing this volume once we find a solution to save Lens-queries to be executed in the explorer. # Consider removing this volume once we find a solution to save Lens-queries to be executed in the explorer.
- "/var/cache/bridgehead/ccp/exporter-db:/var/lib/postgresql/data" - "/var/cache/bridgehead/${PROJECT}/exporter-db:/var/lib/postgresql/data"
reporter: reporter:
image: docker.verbis.dkfz.de/ccp/dktk-reporter:latest image: docker.verbis.dkfz.de/ccp/dktk-reporter:latest
container_name: bridgehead-ccp-reporter container_name: bridgehead-${PROJECT}-reporter
environment: environment:
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC" JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
LOG_LEVEL: "INFO" LOG_LEVEL: "INFO"
CROSS_ORIGINS: "https://${HOST}" CROSS_ORIGINS: "https://${HOST}"
HTTP_RELATIVE_PATH: "/ccp-reporter" HTTP_RELATIVE_PATH: "/${PROJECT}-reporter"
SITE: "${SITE_ID}" SITE: "${SITE_ID}"
EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
EXPORTER_URL: "http://exporter:8092" EXPORTER_URL: "http://exporter:8092"
@ -57,11 +59,15 @@ services:
# There is a risk that the bridgehead restarts, losing the already created export. # There is a risk that the bridgehead restarts, losing the already created export.
volumes: volumes:
- "/var/cache/bridgehead/ccp/reporter-files:/app/reports" - "/var/cache/bridgehead/${PROJECT}/reporter-files:/app/reports"
labels: labels:
- "traefik.enable=true" - "traefik.enable=true"
- "traefik.http.routers.reporter_ccp.rule=PathPrefix(`/ccp-reporter`)" - "traefik.http.routers.reporter_${PROJECT}.rule=PathPrefix(`/${PROJECT}-reporter`)"
- "traefik.http.services.reporter_ccp.loadbalancer.server.port=8095" - "traefik.http.services.reporter_${PROJECT}.loadbalancer.server.port=8095"
- "traefik.http.routers.reporter_ccp.tls=true" - "traefik.http.routers.reporter_${PROJECT}.tls=true"
- "traefik.http.middlewares.reporter_ccp_strip.stripprefix.prefixes=/ccp-reporter" - "traefik.http.middlewares.reporter_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-reporter"
- "traefik.http.routers.reporter_ccp.middlewares=reporter_ccp_strip" - "traefik.http.routers.reporter_${PROJECT}.middlewares=reporter_${PROJECT}_strip"
traefik:
labels:
- "traefik.http.middlewares.auth-qr.basicauth.users=${QR_AUTH}"

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@ -0,0 +1,82 @@
version: "3.7"
services:
teiler-orchestrator:
image: docker.verbis.dkfz.de/cache/samply/teiler-orchestrator:latest
container_name: bridgehead-teiler-orchestrator
labels:
- "traefik.enable=true"
- "traefik.http.routers.teiler_orchestrator_${PROJECT}.rule=PathPrefix(`/${PROJECT}-teiler`)"
- "traefik.http.services.teiler_orchestrator_${PROJECT}.loadbalancer.server.port=9000"
- "traefik.http.routers.teiler_orchestrator_${PROJECT}.tls=true"
- "traefik.http.middlewares.teiler_orchestrator_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-teiler"
- "traefik.http.routers.teiler_orchestrator_${PROJECT}.middlewares=teiler_orchestrator_${PROJECT}_strip"
environment:
TEILER_BACKEND_URL: "https://${HOST}/${PROJECT}-teiler-backend"
TEILER_DASHBOARD_URL: "https://${HOST}/${PROJECT}-teiler-dashboard"
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
HTTP_RELATIVE_PATH: "/${PROJECT}-teiler"
teiler-dashboard:
#image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
image: docker.verbis.dkfz.de/ccp/samply/teiler-dashboard:bbmri
container_name: bridgehead-teiler-dashboard
labels:
- "traefik.enable=true"
- "traefik.http.routers.teiler_dashboard_${PROJECT}.rule=PathPrefix(`/${PROJECT}-teiler-dashboard`)"
- "traefik.http.services.teiler_dashboard_${PROJECT}.loadbalancer.server.port=80"
- "traefik.http.routers.teiler_dashboard_${PROJECT}.tls=true"
- "traefik.http.middlewares.teiler_dashboard_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-teiler-dashboard"
- "traefik.http.routers.teiler_dashboard_${PROJECT}.middlewares=teiler_dashboard_${PROJECT}_strip"
environment:
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
TEILER_BACKEND_URL: "https://${HOST}/${PROJECT}-teiler-backend"
OIDC_URL: "${OIDC_URL}"
OIDC_REALM: "${OIDC_REALM}"
OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
TEILER_ADMIN_NAME: "${OPERATOR_FIRST_NAME} ${OPERATOR_LAST_NAME}"
TEILER_ADMIN_EMAIL: "${OPERATOR_EMAIL}"
TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
TEILER_PROJECT: "${PROJECT}"
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
TEILER_ORCHESTRATOR_URL: "https://${HOST}/${PROJECT}-teiler"
TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/${PROJECT}-teiler-dashboard"
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/${PROJECT}-teiler"
TEILER_USER: "${OIDC_USER_GROUP}"
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
REPORTER_DEFAULT_TEMPLATE_ID: "${PROJECT}-qb"
EXPORTER_DEFAULT_TEMPLATE_ID: "${PROJECT}"
teiler-backend:
image: docker.verbis.dkfz.de/ccp/${PROJECT}-teiler-backend:latest
container_name: bridgehead-teiler-backend
labels:
- "traefik.enable=true"
- "traefik.http.routers.teiler_backend_${PROJECT}.rule=PathPrefix(`/${PROJECT}-teiler-backend`)"
- "traefik.http.services.teiler_backend_${PROJECT}.loadbalancer.server.port=8085"
- "traefik.http.routers.teiler_backend_${PROJECT}.tls=true"
- "traefik.http.middlewares.teiler_backend_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-teiler-backend"
- "traefik.http.routers.teiler_backend_${PROJECT}.middlewares=teiler_backend_${PROJECT}_strip"
environment:
LOG_LEVEL: "INFO"
APPLICATION_PORT: "8085"
APPLICATION_ADDRESS: "${HOST}"
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
CONFIG_ENV_VAR_PATH: "/run/secrets/project-conf"
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/${PROJECT}-teiler"
TEILER_ORCHESTRATOR_URL: "https://${HOST}/${PROJECT}-teiler"
TEILER_DASHBOARD_DE_URL: "https://${HOST}/${PROJECT}-teiler-dashboard/de"
TEILER_DASHBOARD_EN_URL: "https://${HOST}/${PROJECT}-teiler-dashboard/en"
CENTRAX_URL: "${CENTRAXX_URL}"
HTTP_PROXY: "http://forward_proxy:3128"
ENABLE_MTBA: "${ENABLE_MTBA}"
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
secrets:
- project-conf
secrets:
project-conf:
file: "/etc/bridgehead/${PROJECT}.conf"

View File

@ -5,5 +5,5 @@ if [ "$ENABLE_TEILER" == true ];then
OVERRIDE+=" -f ./$PROJECT/modules/teiler-compose.yml" OVERRIDE+=" -f ./$PROJECT/modules/teiler-compose.yml"
TEILER_DEFAULT_LANGUAGE=DE TEILER_DEFAULT_LANGUAGE=DE
TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,} TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,}
add_public_oidc_redirect_url "/ccp-teiler/*" add_public_oidc_redirect_url "/${PROJECT}-teiler/*"
fi fi