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20 Commits
fix/kr-dea
...
feature/qr
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51743b77e7 | |||
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072ee348fc | |||
f328e40963 | |||
eb2955872f |
39
.github/scripts/rename_inactive_branches.py
vendored
Normal file
39
.github/scripts/rename_inactive_branches.py
vendored
Normal file
@ -0,0 +1,39 @@
|
||||
import os
|
||||
import requests
|
||||
from datetime import datetime, timedelta
|
||||
|
||||
# Configuration
|
||||
GITHUB_TOKEN = os.getenv('GITHUB_TOKEN')
|
||||
REPO = 'samply/bridgehead'
|
||||
HEADERS = {'Authorization': f'token {GITHUB_TOKEN}', 'Accept': 'application/vnd.github.v3+json'}
|
||||
API_URL = f'https://api.github.com/repos/{REPO}/branches'
|
||||
INACTIVE_DAYS = 365
|
||||
CUTOFF_DATE = datetime.now() - timedelta(days=INACTIVE_DAYS)
|
||||
|
||||
# Fetch all branches
|
||||
def get_branches():
|
||||
response = requests.get(API_URL, headers=HEADERS)
|
||||
response.raise_for_status()
|
||||
return response.json() if response.status_code == 200 else []
|
||||
|
||||
# Rename inactive branches
|
||||
def rename_branch(old_name, new_name):
|
||||
rename_url = f'https://api.github.com/repos/{REPO}/branches/{old_name}/rename'
|
||||
response = requests.post(rename_url, json={'new_name': new_name}, headers=HEADERS)
|
||||
response.raise_for_status()
|
||||
print(f"Renamed branch {old_name} to {new_name}" if response.status_code == 201 else f"Failed to rename {old_name}: {response.status_code}")
|
||||
|
||||
# Check if the branch is inactive
|
||||
def is_inactive(commit_url):
|
||||
last_commit_date = requests.get(commit_url, headers=HEADERS).json()['commit']['committer']['date']
|
||||
return datetime.strptime(last_commit_date, '%Y-%m-%dT%H:%M:%SZ') < CUTOFF_DATE
|
||||
|
||||
# Rename inactive branches
|
||||
def main():
|
||||
for branch in get_branches():
|
||||
if is_inactive(branch['commit']['url']):
|
||||
#rename_branch(branch['name'], f"archived/{branch['name']}")
|
||||
print(f"[LOG] Branch '{branch['name']}' is inactive and would be renamed to 'archived/{branch['name']}'")
|
||||
|
||||
if __name__ == "__main__":
|
||||
main()
|
27
.github/workflows/rename-inactive-branches.yml
vendored
Normal file
27
.github/workflows/rename-inactive-branches.yml
vendored
Normal file
@ -0,0 +1,27 @@
|
||||
name: Cleanup - Rename Inactive Branches
|
||||
|
||||
on:
|
||||
schedule:
|
||||
- cron: '0 0 * * 0' # Runs every Sunday at midnight
|
||||
|
||||
jobs:
|
||||
archive-stale-branches:
|
||||
runs-on: ubuntu-latest
|
||||
|
||||
steps:
|
||||
- name: Checkout Repository
|
||||
uses: actions/checkout@v2
|
||||
|
||||
- name: Set up Python
|
||||
uses: actions/setup-python@v2
|
||||
with:
|
||||
python-version: '3.x'
|
||||
|
||||
- name: Install Libraries
|
||||
run: pip install requests
|
||||
|
||||
- name: Run Script to Rename Inactive Branches
|
||||
run: |
|
||||
python .github/scripts/rename_inactive_branches.py
|
||||
env:
|
||||
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
@ -10,7 +10,8 @@ services:
|
||||
BASE_URL: "http://bridgehead-bbmri-blaze:8080"
|
||||
JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
|
||||
DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
|
||||
DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
|
||||
DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
|
||||
CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
|
||||
ENFORCE_REFERENTIAL_INTEGRITY: "false"
|
||||
volumes:
|
||||
- "blaze-data:/app/data"
|
||||
|
19
bbmri/vars
19
bbmri/vars
@ -1,3 +1,21 @@
|
||||
BROKER_ID=broker-test.bbmri-test.samply.de
|
||||
BROKER_URL=https://${BROKER_ID}
|
||||
PROXY_ID=${SITE_ID}.${BROKER_ID}
|
||||
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
|
||||
|
||||
BROKER_URL_FOR_PREREQ=$BROKER_URL
|
||||
|
||||
OIDC_USER_GROUP="BBMRI_$(capitalize_first_letter ${SITE_ID})"
|
||||
OIDC_ADMIN_GROUP="BBMRI_$(capitalize_first_letter ${SITE_ID})_Verwalter"
|
||||
OIDC_PUBLIC_CLIENT_ID="BBMRI_${SITE_ID}-public"
|
||||
# Use "test-realm-01" for testing
|
||||
OIDC_REALM="${OIDC_REALM:-test-realm-01}"
|
||||
OIDC_URL="https://login.verbis.dkfz.de"
|
||||
OIDC_ISSUER_URL="${OIDC_URL}/realms/${OIDC_REALM}"
|
||||
OIDC_GROUP_CLAIM="groups"
|
||||
|
||||
POSTGRES_TAG=15.6-alpine
|
||||
|
||||
# Makes sense for all European Biobanks
|
||||
: ${ENABLE_ERIC:=true}
|
||||
|
||||
@ -13,6 +31,7 @@ do
|
||||
source $module
|
||||
done
|
||||
|
||||
|
||||
SUPPORT_EMAIL=$ERIC_SUPPORT_EMAIL
|
||||
BROKER_URL_FOR_PREREQ="${ERIC_BROKER_URL:-$GBN_BROKER_URL}"
|
||||
|
||||
|
@ -106,7 +106,8 @@ case "$ACTION" in
|
||||
loadVars
|
||||
hc_send log "Bridgehead $PROJECT startup: Checking requirements ..."
|
||||
checkRequirements
|
||||
sync_secrets
|
||||
# NOTE: for testing only, we will need to properly setup secret sync if we want to use this code
|
||||
# sync_secrets
|
||||
hc_send log "Bridgehead $PROJECT startup: Requirements checked out. Now starting bridgehead ..."
|
||||
exec $COMPOSE -p $PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE up --abort-on-container-exit
|
||||
;;
|
||||
|
@ -8,7 +8,8 @@ services:
|
||||
BASE_URL: "http://bridgehead-ccp-blaze:8080"
|
||||
JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
|
||||
DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
|
||||
DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
|
||||
DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
|
||||
CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
|
||||
ENFORCE_REFERENTIAL_INTEGRITY: "false"
|
||||
volumes:
|
||||
- "blaze-data:/app/data"
|
||||
|
@ -151,7 +151,7 @@ services:
|
||||
--pass-access-token=false
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.oauth2_proxy.rule=Host(`${HOST}`) && PathPrefix(`/oauth2`)"
|
||||
- "traefik.http.routers.oauth2_proxy.rule=PathPrefix(`/oauth2`)"
|
||||
- "traefik.http.services.oauth2_proxy.loadbalancer.server.port=4180"
|
||||
- "traefik.http.routers.oauth2_proxy.tls=true"
|
||||
environment:
|
||||
|
@ -1,6 +0,0 @@
|
||||
# Full Excel Export
|
||||
curl --location --request POST 'https://${HOST}/ccp-exporter/request?query=Patient&query-format=FHIR_PATH&template-id=ccp&output-format=EXCEL' \
|
||||
--header 'x-api-key: ${EXPORT_API_KEY}'
|
||||
|
||||
# QB
|
||||
curl --location --request POST 'https://${HOST}/ccp-reporter/generate?template-id=ccp'
|
@ -19,10 +19,18 @@ services:
|
||||
- traefik-forward-auth
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
# Router with Authentication
|
||||
- "traefik.http.routers.id-manager.rule=PathPrefix(`/id-manager`)"
|
||||
- "traefik.http.services.id-manager.loadbalancer.server.port=8080"
|
||||
- "traefik.http.routers.id-manager.tls=true"
|
||||
- "traefik.http.routers.id-manager.middlewares=traefik-forward-auth-idm"
|
||||
- "traefik.http.routers.id-manager.service=id-manager-service"
|
||||
# Router without Authentication
|
||||
- "traefik.http.routers.id-manager-compatibility.rule=PathPrefix(`/id-manager/paths/translator/getIds`)"
|
||||
- "traefik.http.routers.id-manager-compatibility.tls=true"
|
||||
- "traefik.http.routers.id-manager-compatibility.service=id-manager-service"
|
||||
# Definition of Service
|
||||
- "traefik.http.services.id-manager-service.loadbalancer.server.port=8080"
|
||||
- "traefik.http.services.id-manager-service.loadbalancer.server.scheme=http"
|
||||
|
||||
patientlist:
|
||||
image: docker.verbis.dkfz.de/bridgehead/mainzelliste
|
||||
@ -57,7 +65,7 @@ services:
|
||||
- "/tmp/bridgehead/patientlist/:/docker-entrypoint-initdb.d/"
|
||||
|
||||
traefik-forward-auth:
|
||||
image: docker.verbis.dkfz.de/cache/oauth2-proxy/oauth2-proxy:v7.6.0
|
||||
image: docker.verbis.dkfz.de/cache/oauth2-proxy/oauth2-proxy:latest
|
||||
environment:
|
||||
- http_proxy=http://forward_proxy:3128
|
||||
- https_proxy=http://forward_proxy:3128
|
||||
@ -67,6 +75,7 @@ services:
|
||||
- OAUTH2_PROXY_CLIENT_ID=bridgehead-${SITE_ID}
|
||||
- OAUTH2_PROXY_CLIENT_SECRET=${IDMANAGER_AUTH_CLIENT_SECRET}
|
||||
- OAUTH2_PROXY_COOKIE_SECRET=${IDMANAGER_AUTH_COOKIE_SECRET}
|
||||
- OAUTH2_PROXY_COOKIE_NAME=_BRIDGEHEAD_oauth2_idm
|
||||
- OAUTH2_PROXY_COOKIE_DOMAINS=.${HOST}
|
||||
- OAUTH2_PROXY_HTTP_ADDRESS=:4180
|
||||
- OAUTH2_PROXY_REVERSE_PROXY=true
|
||||
|
@ -1,81 +0,0 @@
|
||||
version: "3.7"
|
||||
|
||||
services:
|
||||
|
||||
teiler-orchestrator:
|
||||
image: docker.verbis.dkfz.de/cache/samply/teiler-orchestrator:latest
|
||||
container_name: bridgehead-teiler-orchestrator
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_orchestrator_ccp.rule=PathPrefix(`/ccp-teiler`)"
|
||||
- "traefik.http.services.teiler_orchestrator_ccp.loadbalancer.server.port=9000"
|
||||
- "traefik.http.routers.teiler_orchestrator_ccp.tls=true"
|
||||
- "traefik.http.middlewares.teiler_orchestrator_ccp_strip.stripprefix.prefixes=/ccp-teiler"
|
||||
- "traefik.http.routers.teiler_orchestrator_ccp.middlewares=teiler_orchestrator_ccp_strip"
|
||||
environment:
|
||||
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
|
||||
TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
|
||||
HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
|
||||
teiler-dashboard:
|
||||
image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
|
||||
container_name: bridgehead-teiler-dashboard
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_dashboard_ccp.rule=PathPrefix(`/ccp-teiler-dashboard`)"
|
||||
- "traefik.http.services.teiler_dashboard_ccp.loadbalancer.server.port=80"
|
||||
- "traefik.http.routers.teiler_dashboard_ccp.tls=true"
|
||||
- "traefik.http.middlewares.teiler_dashboard_ccp_strip.stripprefix.prefixes=/ccp-teiler-dashboard"
|
||||
- "traefik.http.routers.teiler_dashboard_ccp.middlewares=teiler_dashboard_ccp_strip"
|
||||
environment:
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
|
||||
OIDC_URL: "${OIDC_URL}"
|
||||
OIDC_REALM: "${OIDC_REALM}"
|
||||
OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
|
||||
OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
|
||||
TEILER_ADMIN_NAME: "${OPERATOR_FIRST_NAME} ${OPERATOR_LAST_NAME}"
|
||||
TEILER_ADMIN_EMAIL: "${OPERATOR_EMAIL}"
|
||||
TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
|
||||
TEILER_PROJECT: "${PROJECT}"
|
||||
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
|
||||
TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/ccp-teiler-dashboard"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
TEILER_USER: "${OIDC_USER_GROUP}"
|
||||
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
|
||||
REPORTER_DEFAULT_TEMPLATE_ID: "ccp-qb"
|
||||
EXPORTER_DEFAULT_TEMPLATE_ID: "ccp"
|
||||
|
||||
|
||||
teiler-backend:
|
||||
image: docker.verbis.dkfz.de/ccp/dktk-teiler-backend:latest
|
||||
container_name: bridgehead-teiler-backend
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_backend_ccp.rule=PathPrefix(`/ccp-teiler-backend`)"
|
||||
- "traefik.http.services.teiler_backend_ccp.loadbalancer.server.port=8085"
|
||||
- "traefik.http.routers.teiler_backend_ccp.tls=true"
|
||||
- "traefik.http.middlewares.teiler_backend_ccp_strip.stripprefix.prefixes=/ccp-teiler-backend"
|
||||
- "traefik.http.routers.teiler_backend_ccp.middlewares=teiler_backend_ccp_strip"
|
||||
environment:
|
||||
LOG_LEVEL: "INFO"
|
||||
APPLICATION_PORT: "8085"
|
||||
APPLICATION_ADDRESS: "${HOST}"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||
CONFIG_ENV_VAR_PATH: "/run/secrets/ccp.conf"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
|
||||
TEILER_DASHBOARD_DE_URL: "https://${HOST}/ccp-teiler-dashboard/de"
|
||||
TEILER_DASHBOARD_EN_URL: "https://${HOST}/ccp-teiler-dashboard/en"
|
||||
CENTRAX_URL: "${CENTRAXX_URL}"
|
||||
HTTP_PROXY: "http://forward_proxy:3128"
|
||||
ENABLE_MTBA: "${ENABLE_MTBA}"
|
||||
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
|
||||
secrets:
|
||||
- ccp.conf
|
||||
|
||||
secrets:
|
||||
ccp.conf:
|
||||
file: /etc/bridgehead/ccp.conf
|
1
ccp/vars
1
ccp/vars
@ -5,6 +5,7 @@ FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | h
|
||||
FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
|
||||
SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de
|
||||
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
|
||||
PLATFORM=ccp
|
||||
|
||||
BROKER_URL_FOR_PREREQ=$BROKER_URL
|
||||
|
||||
|
@ -171,8 +171,10 @@ optimizeBlazeMemoryUsage() {
|
||||
if [ $available_system_memory_chunks -eq 0 ]; then
|
||||
log WARN "Only ${BLAZE_MEMORY_CAP} system memory available for Blaze. If your Blaze stores more than 128000 fhir ressources it will run significally slower."
|
||||
export BLAZE_RESOURCE_CACHE_CAP=128000;
|
||||
export BLAZE_CQL_CACHE_CAP=32;
|
||||
else
|
||||
export BLAZE_RESOURCE_CACHE_CAP=$((available_system_memory_chunks * 312500))
|
||||
export BLAZE_CQL_CACHE_CAP=$((($system_memory_in_mb/4)/16));
|
||||
fi
|
||||
fi
|
||||
}
|
||||
|
@ -35,6 +35,12 @@ if [ -z "$LDM_AUTH" ]; then
|
||||
add_basic_auth_user $PROJECT $generated_passwd "LDM_AUTH" $PROJECT
|
||||
fi
|
||||
|
||||
if [ "$ENABLE_EXPORTER" == true ]; then
|
||||
log "INFO" "Now generating basic auth for the quality reports. "
|
||||
generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"
|
||||
add_basic_auth_user $PROJECT $generated_passwd "QR_AUTH" $PROJECT
|
||||
fi
|
||||
|
||||
if [ ! -z "$NNGM_CTS_APIKEY" ] && [ -z "$NNGM_AUTH" ]; then
|
||||
log "INFO" "Now generating basic auth for nNGM upload API (see adduser in bridgehead for more information). "
|
||||
generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"
|
||||
|
@ -21,7 +21,6 @@ services:
|
||||
- "traefik.http.routers.dashboard.service=api@internal"
|
||||
- "traefik.http.routers.dashboard.tls=true"
|
||||
- "traefik.http.routers.dashboard.middlewares=auth"
|
||||
- "traefik.http.middlewares.auth.basicauth.users=${LDM_AUTH}"
|
||||
ports:
|
||||
- 80:80
|
||||
- 443:443
|
||||
|
6
minimal/modules/export-and-qb.curl-templates
Normal file
6
minimal/modules/export-and-qb.curl-templates
Normal file
@ -0,0 +1,6 @@
|
||||
# Full Excel Export
|
||||
curl --location --request POST 'https://${HOST}/${PROJECT}-exporter/request?query=Patient&query-format=FHIR_PATH&template-id=${PROJECT}&output-format=EXCEL' \
|
||||
--header 'x-api-key: ${EXPORT_API_KEY}'
|
||||
|
||||
# QB
|
||||
curl --location --request POST 'https://${HOST}/${PROJECT}-reporter/generate?template-id=${PROJECT}'
|
@ -3,7 +3,7 @@ version: "3.7"
|
||||
services:
|
||||
exporter:
|
||||
image: docker.verbis.dkfz.de/ccp/dktk-exporter:latest
|
||||
container_name: bridgehead-ccp-exporter
|
||||
container_name: bridgehead-${PROJECT}-exporter
|
||||
environment:
|
||||
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
||||
LOG_LEVEL: "INFO"
|
||||
@ -12,39 +12,41 @@ services:
|
||||
EXPORTER_DB_USER: "exporter"
|
||||
EXPORTER_DB_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
|
||||
EXPORTER_DB_URL: "jdbc:postgresql://exporter-db:5432/exporter"
|
||||
HTTP_RELATIVE_PATH: "/ccp-exporter"
|
||||
HTTP_RELATIVE_PATH: "/${PROJECT}-exporter"
|
||||
SITE: "${SITE_ID}"
|
||||
HTTP_SERVLET_REQUEST_SCHEME: "https"
|
||||
OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.exporter_ccp.rule=PathPrefix(`/ccp-exporter`)"
|
||||
- "traefik.http.services.exporter_ccp.loadbalancer.server.port=8092"
|
||||
- "traefik.http.routers.exporter_ccp.tls=true"
|
||||
- "traefik.http.middlewares.exporter_ccp_strip.stripprefix.prefixes=/ccp-exporter"
|
||||
- "traefik.http.routers.exporter_ccp.middlewares=exporter_ccp_strip"
|
||||
- "traefik.http.routers.exporter_${PROJECT}.rule=PathPrefix(`/${PROJECT}-exporter`)"
|
||||
- "traefik.http.services.exporter_${PROJECT}.loadbalancer.server.port=8092"
|
||||
- "traefik.http.routers.exporter_${PROJECT}.tls=true"
|
||||
- "traefik.http.middlewares.exporter_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-exporter"
|
||||
- "traefik.http.routers.exporter_${PROJECT}.middlewares=exporter_${PROJECT}_strip"
|
||||
- "traefik.http.routers.connector.middlewares=connector_strip,auth-qr"
|
||||
volumes:
|
||||
- "/var/cache/bridgehead/ccp/exporter-files:/app/exporter-files/output"
|
||||
- "/var/cache/bridgehead/${PROJECT}/exporter-files:/app/exporter-files/output"
|
||||
|
||||
|
||||
exporter-db:
|
||||
image: docker.verbis.dkfz.de/cache/postgres:${POSTGRES_TAG}
|
||||
container_name: bridgehead-ccp-exporter-db
|
||||
container_name: bridgehead-${PROJECT}-exporter-db
|
||||
environment:
|
||||
POSTGRES_USER: "exporter"
|
||||
POSTGRES_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
|
||||
POSTGRES_DB: "exporter"
|
||||
volumes:
|
||||
# Consider removing this volume once we find a solution to save Lens-queries to be executed in the explorer.
|
||||
- "/var/cache/bridgehead/ccp/exporter-db:/var/lib/postgresql/data"
|
||||
- "/var/cache/bridgehead/${PROJECT}/exporter-db:/var/lib/postgresql/data"
|
||||
|
||||
reporter:
|
||||
image: docker.verbis.dkfz.de/ccp/dktk-reporter:latest
|
||||
container_name: bridgehead-ccp-reporter
|
||||
container_name: bridgehead-${PROJECT}-reporter
|
||||
environment:
|
||||
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
||||
LOG_LEVEL: "INFO"
|
||||
CROSS_ORIGINS: "https://${HOST}"
|
||||
HTTP_RELATIVE_PATH: "/ccp-reporter"
|
||||
HTTP_RELATIVE_PATH: "/${PROJECT}-reporter"
|
||||
SITE: "${SITE_ID}"
|
||||
EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
|
||||
EXPORTER_URL: "http://exporter:8092"
|
||||
@ -57,11 +59,15 @@ services:
|
||||
# There is a risk that the bridgehead restarts, losing the already created export.
|
||||
|
||||
volumes:
|
||||
- "/var/cache/bridgehead/ccp/reporter-files:/app/reports"
|
||||
- "/var/cache/bridgehead/${PROJECT}/reporter-files:/app/reports"
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.reporter_ccp.rule=PathPrefix(`/ccp-reporter`)"
|
||||
- "traefik.http.services.reporter_ccp.loadbalancer.server.port=8095"
|
||||
- "traefik.http.routers.reporter_ccp.tls=true"
|
||||
- "traefik.http.middlewares.reporter_ccp_strip.stripprefix.prefixes=/ccp-reporter"
|
||||
- "traefik.http.routers.reporter_ccp.middlewares=reporter_ccp_strip"
|
||||
- "traefik.http.routers.reporter_${PROJECT}.rule=PathPrefix(`/${PROJECT}-reporter`)"
|
||||
- "traefik.http.services.reporter_${PROJECT}.loadbalancer.server.port=8095"
|
||||
- "traefik.http.routers.reporter_${PROJECT}.tls=true"
|
||||
- "traefik.http.middlewares.reporter_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-reporter"
|
||||
- "traefik.http.routers.reporter_${PROJECT}.middlewares=reporter_${PROJECT}_strip"
|
||||
|
||||
traefik:
|
||||
labels:
|
||||
- "traefik.http.middlewares.auth-qr.basicauth.users=${QR_AUTH}"
|
82
minimal/modules/teiler-compose.yml
Normal file
82
minimal/modules/teiler-compose.yml
Normal file
@ -0,0 +1,82 @@
|
||||
version: "3.7"
|
||||
|
||||
services:
|
||||
|
||||
teiler-orchestrator:
|
||||
image: docker.verbis.dkfz.de/cache/samply/teiler-orchestrator:latest
|
||||
container_name: bridgehead-teiler-orchestrator
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_orchestrator_${PROJECT}.rule=PathPrefix(`/${PROJECT}-teiler`)"
|
||||
- "traefik.http.services.teiler_orchestrator_${PROJECT}.loadbalancer.server.port=9000"
|
||||
- "traefik.http.routers.teiler_orchestrator_${PROJECT}.tls=true"
|
||||
- "traefik.http.middlewares.teiler_orchestrator_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-teiler"
|
||||
- "traefik.http.routers.teiler_orchestrator_${PROJECT}.middlewares=teiler_orchestrator_${PROJECT}_strip"
|
||||
environment:
|
||||
TEILER_BACKEND_URL: "https://${HOST}/${PROJECT}-teiler-backend"
|
||||
TEILER_DASHBOARD_URL: "https://${HOST}/${PROJECT}-teiler-dashboard"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
|
||||
HTTP_RELATIVE_PATH: "/${PROJECT}-teiler"
|
||||
|
||||
teiler-dashboard:
|
||||
#image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
|
||||
image: docker.verbis.dkfz.de/ccp/samply/teiler-dashboard:bbmri
|
||||
container_name: bridgehead-teiler-dashboard
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_dashboard_${PROJECT}.rule=PathPrefix(`/${PROJECT}-teiler-dashboard`)"
|
||||
- "traefik.http.services.teiler_dashboard_${PROJECT}.loadbalancer.server.port=80"
|
||||
- "traefik.http.routers.teiler_dashboard_${PROJECT}.tls=true"
|
||||
- "traefik.http.middlewares.teiler_dashboard_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-teiler-dashboard"
|
||||
- "traefik.http.routers.teiler_dashboard_${PROJECT}.middlewares=teiler_dashboard_${PROJECT}_strip"
|
||||
environment:
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||
TEILER_BACKEND_URL: "https://${HOST}/${PROJECT}-teiler-backend"
|
||||
OIDC_URL: "${OIDC_URL}"
|
||||
OIDC_REALM: "${OIDC_REALM}"
|
||||
OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
|
||||
OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
|
||||
TEILER_ADMIN_NAME: "${OPERATOR_FIRST_NAME} ${OPERATOR_LAST_NAME}"
|
||||
TEILER_ADMIN_EMAIL: "${OPERATOR_EMAIL}"
|
||||
TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
|
||||
TEILER_PROJECT: "${PROJECT}"
|
||||
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/${PROJECT}-teiler"
|
||||
TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/${PROJECT}-teiler-dashboard"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/${PROJECT}-teiler"
|
||||
TEILER_USER: "${OIDC_USER_GROUP}"
|
||||
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
|
||||
REPORTER_DEFAULT_TEMPLATE_ID: "${PROJECT}-qb"
|
||||
EXPORTER_DEFAULT_TEMPLATE_ID: "${PROJECT}"
|
||||
|
||||
|
||||
teiler-backend:
|
||||
image: docker.verbis.dkfz.de/ccp/${PROJECT}-teiler-backend:latest
|
||||
container_name: bridgehead-teiler-backend
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_backend_${PROJECT}.rule=PathPrefix(`/${PROJECT}-teiler-backend`)"
|
||||
- "traefik.http.services.teiler_backend_${PROJECT}.loadbalancer.server.port=8085"
|
||||
- "traefik.http.routers.teiler_backend_${PROJECT}.tls=true"
|
||||
- "traefik.http.middlewares.teiler_backend_${PROJECT}_strip.stripprefix.prefixes=/${PROJECT}-teiler-backend"
|
||||
- "traefik.http.routers.teiler_backend_${PROJECT}.middlewares=teiler_backend_${PROJECT}_strip"
|
||||
environment:
|
||||
LOG_LEVEL: "INFO"
|
||||
APPLICATION_PORT: "8085"
|
||||
APPLICATION_ADDRESS: "${HOST}"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||
CONFIG_ENV_VAR_PATH: "/run/secrets/project-conf"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/${PROJECT}-teiler"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/${PROJECT}-teiler"
|
||||
TEILER_DASHBOARD_DE_URL: "https://${HOST}/${PROJECT}-teiler-dashboard/de"
|
||||
TEILER_DASHBOARD_EN_URL: "https://${HOST}/${PROJECT}-teiler-dashboard/en"
|
||||
CENTRAX_URL: "${CENTRAXX_URL}"
|
||||
HTTP_PROXY: "http://forward_proxy:3128"
|
||||
ENABLE_MTBA: "${ENABLE_MTBA}"
|
||||
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
|
||||
secrets:
|
||||
- project-conf
|
||||
|
||||
secrets:
|
||||
project-conf:
|
||||
file: "/etc/bridgehead/${PROJECT}.conf"
|
@ -5,5 +5,5 @@ if [ "$ENABLE_TEILER" == true ];then
|
||||
OVERRIDE+=" -f ./$PROJECT/modules/teiler-compose.yml"
|
||||
TEILER_DEFAULT_LANGUAGE=DE
|
||||
TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,}
|
||||
add_public_oidc_redirect_url "/ccp-teiler/*"
|
||||
add_public_oidc_redirect_url "/${PROJECT}-teiler/*"
|
||||
fi
|
Reference in New Issue
Block a user