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https://github.com/samply/bridgehead.git
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5 Commits
qr-bbmri-v
...
cherry-pic
Author | SHA1 | Date | |
---|---|---|---|
ec2c61b308 | |||
0cdd5f371b | |||
cd38957dd7 | |||
4ef585bfc5 | |||
6ca67ca082 |
@ -10,10 +10,6 @@ if [ "${ENABLE_ERIC}" == "true" ]; then
|
||||
export ERIC_BROKER_ID=broker.bbmri.samply.de
|
||||
export ERIC_ROOT_CERT=eric
|
||||
;;
|
||||
"acceptance")
|
||||
export ERIC_BROKER_ID=broker-acc.bbmri-acc.samply.de
|
||||
export ERIC_ROOT_CERT=eric.acc
|
||||
;;
|
||||
"test")
|
||||
export ERIC_BROKER_ID=broker-test.bbmri-test.samply.de
|
||||
export ERIC_ROOT_CERT=eric.test
|
||||
|
@ -1,20 +0,0 @@
|
||||
-----BEGIN CERTIFICATE-----
|
||||
MIIDNTCCAh2gAwIBAgIUE/wu6FmI+KSMOalI65b+lI3HI4cwDQYJKoZIhvcNAQEL
|
||||
BQAwFjEUMBIGA1UEAxMLQnJva2VyLVJvb3QwHhcNMjQwOTE2MTUyMzU0WhcNMzQw
|
||||
OTE0MTUyNDI0WjAWMRQwEgYDVQQDEwtCcm9rZXItUm9vdDCCASIwDQYJKoZIhvcN
|
||||
AQEBBQADggEPADCCAQoCggEBAOt1I1FQt2bI4Nnjtg8JBYid29cBIkDT4MMb45Jr
|
||||
ays24y4R3WO7VJK9UjNduSq/A1jlA0W0A/szDf8Ojq6bBtg+uL92PTDjYH1QXwX0
|
||||
c7eMo2tvvyyrs/cb2/ovDBQ1lpibcxVmVAv042ASmil3SdqKKXpv3ATnF9I7V4cv
|
||||
fwB56FChaGIov5EK+9JOMjTx6oMlBEgUFR6qq/lSqM9my0HYwUFbX2W+nT9EKEIP
|
||||
9UP1eyfRZR3E/+oticnm/cS20BGCbjoYrNgLthXKyaASuhGoElKs8EZ3h9MiI+u0
|
||||
DpR0KpePhAkMLugBrgYWqkMwwD1684LfC4YVQrsLwzo5OW8CAwEAAaN7MHkwDgYD
|
||||
VR0PAQH/BAQDAgEGMA8GA1UdEwEB/wQFMAMBAf8wHQYDVR0OBBYEFPbXs3g3lMjH
|
||||
1JMe0a5aVbN7lB92MB8GA1UdIwQYMBaAFPbXs3g3lMjH1JMe0a5aVbN7lB92MBYG
|
||||
A1UdEQQPMA2CC0Jyb2tlci1Sb290MA0GCSqGSIb3DQEBCwUAA4IBAQBM5RsXb2HN
|
||||
FpC1mYfocXAn20Zu4d603qmc/IqkiOWbp36pWo+jk1AxejyRS9hEpQalgSnvcRPQ
|
||||
1hPEhGU+wvI0WWVi/01iNjVbXmJNPQEouXQWAT17dyp9vqQkPw8LNzpSV/qdPgbT
|
||||
Z9o3sZrjUsSLsK7A7Q5ky4ePkiJBaMsHeAD+wqGwpiJ4D2Xhp8e1v36TWM0qt2EA
|
||||
gySx9isx/jeGGPBmDqYB9BCal5lrihPN56jd+5pCkyXeZqKWiiXFJKXwcwxctYZc
|
||||
ADHIiTLLPXE8LHTUJAO51it1NAZ1S24aMzax4eWDXcWO7/ybbx5pkYkMd6EqlKHd
|
||||
8riQJIhY4huX
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-----END CERTIFICATE-----
|
29
bbmri/vars
29
bbmri/vars
@ -1,25 +1,3 @@
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DEFAULT_LANGUAGE=EN
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DEFAULT_LANGUAGE_LOWER_CASE=${DEFAULT_LANGUAGE,,}
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|
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BROKER_ID=broker-test.bbmri-test.samply.de
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BROKER_URL=https://${BROKER_ID}
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PROXY_ID=${SITE_ID}.${BROKER_ID}
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PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
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PLATFORM=bbmri
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BROKER_URL_FOR_PREREQ=$BROKER_URL
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OIDC_USER_GROUP="BBMRI_$(capitalize_first_letter ${SITE_ID})"
|
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OIDC_ADMIN_GROUP="BBMRI_$(capitalize_first_letter ${SITE_ID})_Verwalter"
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OIDC_PUBLIC_CLIENT_ID="BBMRI_${SITE_ID}-public"
|
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# Use "test-realm-01" for testing
|
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OIDC_REALM="${OIDC_REALM:-test-realm-01}"
|
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OIDC_URL="https://login.verbis.dkfz.de"
|
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OIDC_ISSUER_URL="${OIDC_URL}/realms/${OIDC_REALM}"
|
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OIDC_GROUP_CLAIM="groups"
|
||||
|
||||
POSTGRES_TAG=15.6-alpine
|
||||
|
||||
# Makes sense for all European Biobanks
|
||||
: ${ENABLE_ERIC:=true}
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||||
|
||||
@ -35,13 +13,6 @@ do
|
||||
source $module
|
||||
done
|
||||
|
||||
log DEBUG "sourcing ccp/modules/exporter-setup.sh"
|
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source ccp/modules/exporter-setup.sh
|
||||
|
||||
log DEBUG "sourcing ccp/modules/teiler-setup.sh"
|
||||
source ccp/modules/teiler-setup.sh
|
||||
|
||||
|
||||
SUPPORT_EMAIL=$ERIC_SUPPORT_EMAIL
|
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BROKER_URL_FOR_PREREQ="${ERIC_BROKER_URL:-$GBN_BROKER_URL}"
|
||||
|
||||
|
@ -69,7 +69,7 @@ loadVars() {
|
||||
if [ "$(git rev-parse --abbrev-ref HEAD)" == "main" ]; then
|
||||
ENVIRONMENT="production"
|
||||
else
|
||||
ENVIRONMENT="test" # we have acceptance environment in BBMRI ERIC and it would be more appropriate to default to that one in case the data they have in BH is real, but I'm gonna leave it as is for backward compatibility
|
||||
ENVIRONMENT="test"
|
||||
fi
|
||||
fi
|
||||
# Source the versions of the images components
|
||||
@ -80,9 +80,6 @@ loadVars() {
|
||||
"test")
|
||||
source ./versions/test
|
||||
;;
|
||||
"acceptance")
|
||||
source ./versions/acceptance
|
||||
;;
|
||||
*)
|
||||
report_error 7 "Environment \"$ENVIRONMENT\" is unknown. Assuming production. FIX THIS!"
|
||||
source ./versions/prod
|
||||
|
@ -3,7 +3,7 @@ version: "3.7"
|
||||
services:
|
||||
exporter:
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||||
image: docker.verbis.dkfz.de/ccp/dktk-exporter:latest
|
||||
container_name: bridgehead-${PLATFORM}-exporter
|
||||
container_name: bridgehead-ccp-exporter
|
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environment:
|
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JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
||||
LOG_LEVEL: "INFO"
|
||||
@ -12,39 +12,39 @@ services:
|
||||
EXPORTER_DB_USER: "exporter"
|
||||
EXPORTER_DB_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
|
||||
EXPORTER_DB_URL: "jdbc:postgresql://exporter-db:5432/exporter"
|
||||
HTTP_RELATIVE_PATH: "/${PLATFORM}-exporter"
|
||||
HTTP_RELATIVE_PATH: "/ccp-exporter"
|
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SITE: "${SITE_ID}"
|
||||
HTTP_SERVLET_REQUEST_SCHEME: "https"
|
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OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.exporter_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-exporter`)"
|
||||
- "traefik.http.services.exporter_${PLATFORM}.loadbalancer.server.port=8092"
|
||||
- "traefik.http.routers.exporter_${PLATFORM}.tls=true"
|
||||
- "traefik.http.middlewares.exporter_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-exporter"
|
||||
- "traefik.http.routers.exporter_${PLATFORM}.middlewares=exporter_${PLATFORM}_strip"
|
||||
- "traefik.http.routers.exporter_ccp.rule=PathPrefix(`/ccp-exporter`)"
|
||||
- "traefik.http.services.exporter_ccp.loadbalancer.server.port=8092"
|
||||
- "traefik.http.routers.exporter_ccp.tls=true"
|
||||
- "traefik.http.middlewares.exporter_ccp_strip.stripprefix.prefixes=/ccp-exporter"
|
||||
- "traefik.http.routers.exporter_ccp.middlewares=exporter_ccp_strip"
|
||||
volumes:
|
||||
- "/var/cache/bridgehead/${PLATFORM}/exporter-files:/app/exporter-files/output"
|
||||
- "/var/cache/bridgehead/ccp/exporter-files:/app/exporter-files/output"
|
||||
|
||||
exporter-db:
|
||||
image: docker.verbis.dkfz.de/cache/postgres:${POSTGRES_TAG}
|
||||
container_name: bridgehead-${PLATFORM}-exporter-db
|
||||
container_name: bridgehead-ccp-exporter-db
|
||||
environment:
|
||||
POSTGRES_USER: "exporter"
|
||||
POSTGRES_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
|
||||
POSTGRES_DB: "exporter"
|
||||
volumes:
|
||||
# Consider removing this volume once we find a solution to save Lens-queries to be executed in the explorer.
|
||||
- "/var/cache/bridgehead/${PLATFORM}/exporter-db:/var/lib/postgresql/data"
|
||||
- "/var/cache/bridgehead/ccp/exporter-db:/var/lib/postgresql/data"
|
||||
|
||||
reporter:
|
||||
image: docker.verbis.dkfz.de/ccp/dktk-reporter:latest
|
||||
container_name: bridgehead-${PLATFORM}-reporter
|
||||
container_name: bridgehead-ccp-reporter
|
||||
environment:
|
||||
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
||||
LOG_LEVEL: "INFO"
|
||||
CROSS_ORIGINS: "https://${HOST}"
|
||||
HTTP_RELATIVE_PATH: "/${PLATFORM}-reporter"
|
||||
HTTP_RELATIVE_PATH: "/ccp-reporter"
|
||||
SITE: "${SITE_ID}"
|
||||
EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
|
||||
EXPORTER_URL: "http://exporter:8092"
|
||||
@ -57,15 +57,14 @@ services:
|
||||
# There is a risk that the bridgehead restarts, losing the already created export.
|
||||
|
||||
volumes:
|
||||
- "/var/cache/bridgehead/${PLATFORM}/reporter-files:/app/reports"
|
||||
- "/var/cache/bridgehead/ccp/reporter-files:/app/reports"
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.reporter_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-reporter`)"
|
||||
- "traefik.http.services.reporter_${PLATFORM}.loadbalancer.server.port=8095"
|
||||
- "traefik.http.routers.reporter_${PLATFORM}.tls=true"
|
||||
- "traefik.http.middlewares.reporter_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-reporter"
|
||||
- "traefik.http.routers.reporter_${PLATFORM}.middlewares=reporter_${PLATFORM}_strip"
|
||||
|
||||
- "traefik.http.routers.reporter_ccp.rule=PathPrefix(`/ccp-reporter`)"
|
||||
- "traefik.http.services.reporter_ccp.loadbalancer.server.port=8095"
|
||||
- "traefik.http.routers.reporter_ccp.tls=true"
|
||||
- "traefik.http.middlewares.reporter_ccp_strip.stripprefix.prefixes=/ccp-reporter"
|
||||
- "traefik.http.routers.reporter_ccp.middlewares=reporter_ccp_strip"
|
||||
|
||||
focus:
|
||||
environment:
|
||||
|
@ -2,7 +2,7 @@
|
||||
|
||||
if [ "$ENABLE_EXPORTER" == true ]; then
|
||||
log INFO "Exporter setup detected -- will start Exporter service."
|
||||
OVERRIDE+=" -f ./ccp/modules/exporter-compose.yml"
|
||||
OVERRIDE+=" -f ./$PROJECT/modules/exporter-compose.yml"
|
||||
EXPORTER_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password for the exporter. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
|
||||
EXPORTER_API_KEY="$(echo \"This is a salt string to generate one consistent API KEY for the exporter. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 64)"
|
||||
fi
|
||||
|
@ -7,31 +7,30 @@ services:
|
||||
container_name: bridgehead-teiler-orchestrator
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_orchestrator_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-teiler`)"
|
||||
- "traefik.http.services.teiler_orchestrator_${PLATFORM}.loadbalancer.server.port=9000"
|
||||
- "traefik.http.routers.teiler_orchestrator_${PLATFORM}.tls=true"
|
||||
- "traefik.http.middlewares.teiler_orchestrator_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-teiler"
|
||||
- "traefik.http.routers.teiler_orchestrator_${PLATFORM}.middlewares=teiler_orchestrator_${PLATFORM}_strip"
|
||||
- "traefik.http.routers.teiler_orchestrator_ccp.rule=PathPrefix(`/ccp-teiler`)"
|
||||
- "traefik.http.services.teiler_orchestrator_ccp.loadbalancer.server.port=9000"
|
||||
- "traefik.http.routers.teiler_orchestrator_ccp.tls=true"
|
||||
- "traefik.http.middlewares.teiler_orchestrator_ccp_strip.stripprefix.prefixes=/ccp-teiler"
|
||||
- "traefik.http.routers.teiler_orchestrator_ccp.middlewares=teiler_orchestrator_ccp_strip"
|
||||
environment:
|
||||
TEILER_BACKEND_URL: "https://${HOST}/${PLATFORM}-teiler-backend"
|
||||
TEILER_DASHBOARD_URL: "https://${HOST}/${PLATFORM}-teiler-dashboard"
|
||||
DEFAULT_LANGUAGE: "${DEFAULT_LANGUAGE_LOWER_CASE}"
|
||||
HTTP_RELATIVE_PATH: "/${PLATFORM}-teiler"
|
||||
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
|
||||
TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
|
||||
HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
|
||||
teiler-dashboard:
|
||||
image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
|
||||
container_name: bridgehead-teiler-dashboard
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_dashboard_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-teiler-dashboard`)"
|
||||
- "traefik.http.services.teiler_dashboard_${PLATFORM}.loadbalancer.server.port=80"
|
||||
- "traefik.http.routers.teiler_dashboard_${PLATFORM}.tls=true"
|
||||
- "traefik.http.middlewares.teiler_dashboard_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-teiler-dashboard"
|
||||
- "traefik.http.routers.teiler_dashboard_${PLATFORM}.middlewares=teiler_dashboard_${PLATFORM}_strip"
|
||||
- "traefik.http.routers.teiler_dashboard_ccp.rule=PathPrefix(`/ccp-teiler-dashboard`)"
|
||||
- "traefik.http.services.teiler_dashboard_ccp.loadbalancer.server.port=80"
|
||||
- "traefik.http.routers.teiler_dashboard_ccp.tls=true"
|
||||
- "traefik.http.middlewares.teiler_dashboard_ccp_strip.stripprefix.prefixes=/ccp-teiler-dashboard"
|
||||
- "traefik.http.routers.teiler_dashboard_ccp.middlewares=teiler_dashboard_ccp_strip"
|
||||
environment:
|
||||
DEFAULT_LANGUAGE: "${DEFAULT_LANGUAGE}"
|
||||
TEILER_BACKEND_URL: "https://${HOST}/${PLATFORM}-teiler-backend"
|
||||
TEILER_DASHBOARD_URL: "https://${HOST}/${PLATFORM}-teiler-dashboard"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
|
||||
OIDC_URL: "${OIDC_URL}"
|
||||
OIDC_REALM: "${OIDC_REALM}"
|
||||
OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
|
||||
@ -41,40 +40,42 @@ services:
|
||||
TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
|
||||
TEILER_PROJECT: "${PROJECT}"
|
||||
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/${PLATFORM}-teiler"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/${PLATFORM}-teiler"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
|
||||
TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/ccp-teiler-dashboard"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
TEILER_USER: "${OIDC_USER_GROUP}"
|
||||
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
|
||||
REPORTER_DEFAULT_TEMPLATE_ID: "${PLATFORM}-qb"
|
||||
EXPORTER_DEFAULT_TEMPLATE_ID: "${PLATFORM}"
|
||||
REPORTER_DEFAULT_TEMPLATE_ID: "ccp-qb"
|
||||
EXPORTER_DEFAULT_TEMPLATE_ID: "ccp"
|
||||
|
||||
|
||||
teiler-backend:
|
||||
image: docker.verbis.dkfz.de/ccp/${PROJECT}-teiler-backend:latest
|
||||
image: docker.verbis.dkfz.de/ccp/dktk-teiler-backend:latest
|
||||
container_name: bridgehead-teiler-backend
|
||||
labels:
|
||||
- "traefik.enable=true"
|
||||
- "traefik.http.routers.teiler_backend_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-teiler-backend`)"
|
||||
- "traefik.http.services.teiler_backend_${PLATFORM}.loadbalancer.server.port=8085"
|
||||
- "traefik.http.routers.teiler_backend_${PLATFORM}.tls=true"
|
||||
- "traefik.http.middlewares.teiler_backend_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-teiler-backend"
|
||||
- "traefik.http.routers.teiler_backend_${PLATFORM}.middlewares=teiler_backend_${PLATFORM}_strip"
|
||||
- "traefik.http.routers.teiler_backend_ccp.rule=PathPrefix(`/ccp-teiler-backend`)"
|
||||
- "traefik.http.services.teiler_backend_ccp.loadbalancer.server.port=8085"
|
||||
- "traefik.http.routers.teiler_backend_ccp.tls=true"
|
||||
- "traefik.http.middlewares.teiler_backend_ccp_strip.stripprefix.prefixes=/ccp-teiler-backend"
|
||||
- "traefik.http.routers.teiler_backend_ccp.middlewares=teiler_backend_ccp_strip"
|
||||
environment:
|
||||
LOG_LEVEL: "INFO"
|
||||
APPLICATION_PORT: "8085"
|
||||
APPLICATION_ADDRESS: "${HOST}"
|
||||
DEFAULT_LANGUAGE: "${DEFAULT_LANGUAGE}"
|
||||
CONFIG_ENV_VAR_PATH: "/run/secrets/project-conf"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/${PLATFORM}-teiler"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/${PLATFORM}-teiler"
|
||||
TEILER_DASHBOARD_DE_URL: "https://${HOST}/${PLATFORM}-teiler-dashboard/de"
|
||||
TEILER_DASHBOARD_EN_URL: "https://${HOST}/${PLATFORM}-teiler-dashboard/en"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||
CONFIG_ENV_VAR_PATH: "/run/secrets/ccp.conf"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
|
||||
TEILER_DASHBOARD_DE_URL: "https://${HOST}/ccp-teiler-dashboard/de"
|
||||
TEILER_DASHBOARD_EN_URL: "https://${HOST}/ccp-teiler-dashboard/en"
|
||||
CENTRAX_URL: "${CENTRAXX_URL}"
|
||||
HTTP_PROXY: "http://forward_proxy:3128"
|
||||
ENABLE_MTBA: "${ENABLE_MTBA}"
|
||||
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
|
||||
secrets:
|
||||
- project-conf
|
||||
- ccp.conf
|
||||
|
||||
secrets:
|
||||
project-conf:
|
||||
file: "/etc/bridgehead/${PROJECT}.conf"
|
||||
ccp.conf:
|
||||
file: /etc/bridgehead/ccp.conf
|
||||
|
@ -2,6 +2,8 @@
|
||||
|
||||
if [ "$ENABLE_TEILER" == true ];then
|
||||
log INFO "Teiler setup detected -- will start Teiler services."
|
||||
OVERRIDE+=" -f ./ccp/modules/teiler-compose.yml"
|
||||
OVERRIDE+=" -f ./$PROJECT/modules/teiler-compose.yml"
|
||||
TEILER_DEFAULT_LANGUAGE=DE
|
||||
TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,}
|
||||
add_public_oidc_redirect_url "/ccp-teiler/*"
|
||||
fi
|
||||
|
4
ccp/vars
4
ccp/vars
@ -1,6 +1,3 @@
|
||||
DEFAULT_LANGUAGE=EN
|
||||
DEFAULT_LANGUAGE_LOWER_CASE=${DEFAULT_LANGUAGE,,}
|
||||
|
||||
BROKER_ID=broker.ccp-it.dktk.dkfz.de
|
||||
BROKER_URL=https://${BROKER_ID}
|
||||
PROXY_ID=${SITE_ID}.${BROKER_ID}
|
||||
@ -8,7 +5,6 @@ FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | h
|
||||
FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
|
||||
SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de
|
||||
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
|
||||
PLATFORM=bbmri
|
||||
|
||||
BROKER_URL_FOR_PREREQ=$BROKER_URL
|
||||
|
||||
|
@ -15,7 +15,7 @@ services:
|
||||
environment:
|
||||
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
|
||||
TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
|
||||
DEFAULT_LANGUAGE: "${DEFAULT_LANGUAGE_LOWER_CASE}"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
|
||||
HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
|
||||
teiler-dashboard:
|
||||
@ -29,9 +29,8 @@ services:
|
||||
- "traefik.http.middlewares.teiler_dashboard_ccp_strip.stripprefix.prefixes=/ccp-teiler-dashboard"
|
||||
- "traefik.http.routers.teiler_dashboard_ccp.middlewares=teiler_dashboard_ccp_strip"
|
||||
environment:
|
||||
DEFAULT_LANGUAGE: "${DEFAULT_LANGUAGE}"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
|
||||
TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
|
||||
OIDC_URL: "${OIDC_URL}"
|
||||
OIDC_REALM: "${OIDC_REALM}"
|
||||
OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
|
||||
@ -42,6 +41,7 @@ services:
|
||||
TEILER_PROJECT: "${PROJECT}"
|
||||
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
|
||||
TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/ccp-teiler-dashboard"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
TEILER_USER: "${OIDC_USER_GROUP}"
|
||||
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
|
||||
@ -63,12 +63,13 @@ services:
|
||||
LOG_LEVEL: "INFO"
|
||||
APPLICATION_PORT: "8085"
|
||||
APPLICATION_ADDRESS: "${HOST}"
|
||||
DEFAULT_LANGUAGE: "${DEFAULT_LANGUAGE}"
|
||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||
CONFIG_ENV_VAR_PATH: "/run/secrets/ccp.conf"
|
||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
|
||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
|
||||
TEILER_DASHBOARD_DE_URL: "https://${HOST}/ccp-teiler-dashboard/de"
|
||||
TEILER_DASHBOARD_EN_URL: "https://${HOST}/ccp-teiler-dashboard/en"
|
||||
CENTRAX_URL: "${CENTRAXX_URL}"
|
||||
HTTP_PROXY: "http://forward_proxy:3128"
|
||||
ENABLE_MTBA: "${ENABLE_MTBA}"
|
||||
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
|
||||
|
@ -3,5 +3,7 @@
|
||||
if [ "$ENABLE_TEILER" == true ];then
|
||||
log INFO "Teiler setup detected -- will start Teiler services."
|
||||
OVERRIDE+=" -f ./$PROJECT/modules/teiler-compose.yml"
|
||||
TEILER_DEFAULT_LANGUAGE=DE
|
||||
TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,}
|
||||
add_public_oidc_redirect_url "/ccp-teiler/*"
|
||||
fi
|
||||
|
@ -2,5 +2,5 @@
|
||||
|
||||
if [ -n "$ENABLE_SSH_TUNNEL" ]; then
|
||||
log INFO "SSH Tunnel setup detected -- will start SSH Tunnel."
|
||||
OVERRIDE+=" -f ./modules/ssh-tunnel-compose.yml"
|
||||
OVERRIDE+=" -f ./$PROJECT/modules/ssh-tunnel-compose.yml"
|
||||
fi
|
||||
|
@ -8,8 +8,7 @@ services:
|
||||
- TTP_URL
|
||||
- TTP_ML_API_KEY
|
||||
- TTP_GW_SOURCE
|
||||
- TTP_GW_EPIX_DOMAIN
|
||||
- TTP_GW_GPAS_DOMAIN
|
||||
- TTP_GW_DOMAIN
|
||||
- TTP_TYPE
|
||||
- TTP_AUTH
|
||||
- PROJECT_ID_SYSTEM
|
||||
@ -23,9 +22,6 @@ services:
|
||||
- DATABASE_URL=sqlite://transfair/data_requests.sql?mode=rwc
|
||||
- RUST_LOG=${RUST_LOG:-info}
|
||||
- TLS_CA_CERTIFICATES_DIR=/conf/trusted-ca-certs
|
||||
- TLS_DISABLE=${TRANSFAIR_TLS_DISABLE:-false}
|
||||
- NO_PROXY=${TRANSFAIR_NO_PROXIES}
|
||||
- ALL_PROXY=http://forward_proxy:3128
|
||||
volumes:
|
||||
- /var/cache/bridgehead/${PROJECT}/transfair:/transfair
|
||||
- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
|
||||
@ -63,9 +59,9 @@ services:
|
||||
|
||||
transfair-request-blaze:
|
||||
image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
|
||||
container_name: bridgehead-transfair-request-blaze
|
||||
container_name: bridgehead-transfair-requests-blaze
|
||||
environment:
|
||||
BASE_URL: "http://bridgehead-transfair-request-blaze:8080"
|
||||
BASE_URL: "http://bridgehead-transfair-requests-blaze:8080"
|
||||
JAVA_TOOL_OPTIONS: "-Xmx1024m"
|
||||
DB_BLOCK_CACHE_SIZE: 1024
|
||||
CQL_EXPR_CACHE_SIZE: 8
|
||||
|
@ -15,7 +15,7 @@ function transfairSetup() {
|
||||
log INFO "TransFAIR request fhir store set to external $FHIR_REQUEST_URL"
|
||||
else
|
||||
log INFO "TransFAIR request fhir store not set writing to internal blaze"
|
||||
FHIR_REQUEST_URL="http://transfair-request-blaze:8080"
|
||||
FHIR_REQUEST_URL="http://transfair-requests-blaze:8080"
|
||||
OVERRIDE+=" --profile transfair-request-blaze"
|
||||
fi
|
||||
if [ -n "$TTP_GW_SOURCE" ]; then
|
||||
@ -27,9 +27,5 @@ function transfairSetup() {
|
||||
else
|
||||
log INFO "TransFAIR configured without ttp"
|
||||
fi
|
||||
TRANSFAIR_NO_PROXIES="transfair-input-blaze,blaze,transfair-requests-blaze"
|
||||
if [ -n "${TRANSFAIR_NO_PROXY}" ]; then
|
||||
TRANSFAIR_NO_PROXIES+=",${TRANSFAIR_NO_PROXY}"
|
||||
fi
|
||||
fi
|
||||
}
|
||||
|
@ -1,3 +0,0 @@
|
||||
FOCUS_TAG=develop
|
||||
BEAM_TAG=develop
|
||||
BLAZE_TAG=main
|
Reference in New Issue
Block a user