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refactor/d
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feature/ad
Author | SHA1 | Date | |
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63274a4aba | |||
183e9c7e69 | |||
cfa0709e17 | |||
77e4cc53c6 | |||
9cf6538568 | |||
51743b77e7 | |||
5ea782c90c | |||
1d3c398370 | |||
5a0a804486 | |||
a899588f15 | |||
7aaee5e7d5 | |||
3312ca8a64 | |||
072ee348fc |
39
.github/scripts/rename_inactive_branches.py
vendored
Normal file
39
.github/scripts/rename_inactive_branches.py
vendored
Normal file
@ -0,0 +1,39 @@
|
|||||||
|
import os
|
||||||
|
import requests
|
||||||
|
from datetime import datetime, timedelta
|
||||||
|
|
||||||
|
# Configuration
|
||||||
|
GITHUB_TOKEN = os.getenv('GITHUB_TOKEN')
|
||||||
|
REPO = 'samply/bridgehead'
|
||||||
|
HEADERS = {'Authorization': f'token {GITHUB_TOKEN}', 'Accept': 'application/vnd.github.v3+json'}
|
||||||
|
API_URL = f'https://api.github.com/repos/{REPO}/branches'
|
||||||
|
INACTIVE_DAYS = 365
|
||||||
|
CUTOFF_DATE = datetime.now() - timedelta(days=INACTIVE_DAYS)
|
||||||
|
|
||||||
|
# Fetch all branches
|
||||||
|
def get_branches():
|
||||||
|
response = requests.get(API_URL, headers=HEADERS)
|
||||||
|
response.raise_for_status()
|
||||||
|
return response.json() if response.status_code == 200 else []
|
||||||
|
|
||||||
|
# Rename inactive branches
|
||||||
|
def rename_branch(old_name, new_name):
|
||||||
|
rename_url = f'https://api.github.com/repos/{REPO}/branches/{old_name}/rename'
|
||||||
|
response = requests.post(rename_url, json={'new_name': new_name}, headers=HEADERS)
|
||||||
|
response.raise_for_status()
|
||||||
|
print(f"Renamed branch {old_name} to {new_name}" if response.status_code == 201 else f"Failed to rename {old_name}: {response.status_code}")
|
||||||
|
|
||||||
|
# Check if the branch is inactive
|
||||||
|
def is_inactive(commit_url):
|
||||||
|
last_commit_date = requests.get(commit_url, headers=HEADERS).json()['commit']['committer']['date']
|
||||||
|
return datetime.strptime(last_commit_date, '%Y-%m-%dT%H:%M:%SZ') < CUTOFF_DATE
|
||||||
|
|
||||||
|
# Rename inactive branches
|
||||||
|
def main():
|
||||||
|
for branch in get_branches():
|
||||||
|
if is_inactive(branch['commit']['url']):
|
||||||
|
#rename_branch(branch['name'], f"archived/{branch['name']}")
|
||||||
|
print(f"[LOG] Branch '{branch['name']}' is inactive and would be renamed to 'archived/{branch['name']}'")
|
||||||
|
|
||||||
|
if __name__ == "__main__":
|
||||||
|
main()
|
27
.github/workflows/rename-inactive-branches.yml
vendored
Normal file
27
.github/workflows/rename-inactive-branches.yml
vendored
Normal file
@ -0,0 +1,27 @@
|
|||||||
|
name: Cleanup - Rename Inactive Branches
|
||||||
|
|
||||||
|
on:
|
||||||
|
schedule:
|
||||||
|
- cron: '0 0 * * 0' # Runs every Sunday at midnight
|
||||||
|
|
||||||
|
jobs:
|
||||||
|
archive-stale-branches:
|
||||||
|
runs-on: ubuntu-latest
|
||||||
|
|
||||||
|
steps:
|
||||||
|
- name: Checkout Repository
|
||||||
|
uses: actions/checkout@v2
|
||||||
|
|
||||||
|
- name: Set up Python
|
||||||
|
uses: actions/setup-python@v2
|
||||||
|
with:
|
||||||
|
python-version: '3.x'
|
||||||
|
|
||||||
|
- name: Install Libraries
|
||||||
|
run: pip install requests
|
||||||
|
|
||||||
|
- name: Run Script to Rename Inactive Branches
|
||||||
|
run: |
|
||||||
|
python .github/scripts/rename_inactive_branches.py
|
||||||
|
env:
|
||||||
|
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
|
@ -10,7 +10,8 @@ services:
|
|||||||
BASE_URL: "http://bridgehead-bbmri-blaze:8080"
|
BASE_URL: "http://bridgehead-bbmri-blaze:8080"
|
||||||
JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
|
JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
|
||||||
DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
|
DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
|
||||||
DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
|
DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
|
||||||
|
CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
|
||||||
ENFORCE_REFERENTIAL_INTEGRITY: "false"
|
ENFORCE_REFERENTIAL_INTEGRITY: "false"
|
||||||
volumes:
|
volumes:
|
||||||
- "blaze-data:/app/data"
|
- "blaze-data:/app/data"
|
||||||
|
26
bbmri/vars
26
bbmri/vars
@ -1,3 +1,22 @@
|
|||||||
|
BROKER_ID=broker-test.bbmri-test.samply.de
|
||||||
|
BROKER_URL=https://${BROKER_ID}
|
||||||
|
PROXY_ID=${SITE_ID}.${BROKER_ID}
|
||||||
|
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
|
||||||
|
PLATFORM=bbmri
|
||||||
|
|
||||||
|
BROKER_URL_FOR_PREREQ=$BROKER_URL
|
||||||
|
|
||||||
|
OIDC_USER_GROUP="BBMRI_$(capitalize_first_letter ${SITE_ID})"
|
||||||
|
OIDC_ADMIN_GROUP="BBMRI_$(capitalize_first_letter ${SITE_ID})_Verwalter"
|
||||||
|
OIDC_PUBLIC_CLIENT_ID="BBMRI_${SITE_ID}-public"
|
||||||
|
# Use "test-realm-01" for testing
|
||||||
|
OIDC_REALM="${OIDC_REALM:-test-realm-01}"
|
||||||
|
OIDC_URL="https://login.verbis.dkfz.de"
|
||||||
|
OIDC_ISSUER_URL="${OIDC_URL}/realms/${OIDC_REALM}"
|
||||||
|
OIDC_GROUP_CLAIM="groups"
|
||||||
|
|
||||||
|
POSTGRES_TAG=15.6-alpine
|
||||||
|
|
||||||
# Makes sense for all European Biobanks
|
# Makes sense for all European Biobanks
|
||||||
: ${ENABLE_ERIC:=true}
|
: ${ENABLE_ERIC:=true}
|
||||||
|
|
||||||
@ -13,6 +32,13 @@ do
|
|||||||
source $module
|
source $module
|
||||||
done
|
done
|
||||||
|
|
||||||
|
log DEBUG "sourcing ccp/modules/exporter-setup.sh"
|
||||||
|
source ccp/modules/exporter-setup.sh
|
||||||
|
|
||||||
|
log DEBUG "sourcing ccp/modules/teiler-setup.sh"
|
||||||
|
source ccp/modules/teiler-setup.sh
|
||||||
|
|
||||||
|
|
||||||
SUPPORT_EMAIL=$ERIC_SUPPORT_EMAIL
|
SUPPORT_EMAIL=$ERIC_SUPPORT_EMAIL
|
||||||
BROKER_URL_FOR_PREREQ="${ERIC_BROKER_URL:-$GBN_BROKER_URL}"
|
BROKER_URL_FOR_PREREQ="${ERIC_BROKER_URL:-$GBN_BROKER_URL}"
|
||||||
|
|
||||||
|
@ -106,7 +106,8 @@ case "$ACTION" in
|
|||||||
loadVars
|
loadVars
|
||||||
hc_send log "Bridgehead $PROJECT startup: Checking requirements ..."
|
hc_send log "Bridgehead $PROJECT startup: Checking requirements ..."
|
||||||
checkRequirements
|
checkRequirements
|
||||||
sync_secrets
|
# NOTE: for testing only, we will need to properly setup secret sync if we want to use this code
|
||||||
|
# sync_secrets
|
||||||
hc_send log "Bridgehead $PROJECT startup: Requirements checked out. Now starting bridgehead ..."
|
hc_send log "Bridgehead $PROJECT startup: Requirements checked out. Now starting bridgehead ..."
|
||||||
exec $COMPOSE -p $PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE up --abort-on-container-exit
|
exec $COMPOSE -p $PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE up --abort-on-container-exit
|
||||||
;;
|
;;
|
||||||
|
@ -8,7 +8,8 @@ services:
|
|||||||
BASE_URL: "http://bridgehead-ccp-blaze:8080"
|
BASE_URL: "http://bridgehead-ccp-blaze:8080"
|
||||||
JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
|
JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
|
||||||
DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
|
DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
|
||||||
DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
|
DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
|
||||||
|
CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
|
||||||
ENFORCE_REFERENTIAL_INTEGRITY: "false"
|
ENFORCE_REFERENTIAL_INTEGRITY: "false"
|
||||||
volumes:
|
volumes:
|
||||||
- "blaze-data:/app/data"
|
- "blaze-data:/app/data"
|
||||||
|
@ -121,38 +121,42 @@ services:
|
|||||||
oauth2-proxy:
|
oauth2-proxy:
|
||||||
image: docker.verbis.dkfz.de/cache/oauth2-proxy/oauth2-proxy:latest
|
image: docker.verbis.dkfz.de/cache/oauth2-proxy/oauth2-proxy:latest
|
||||||
container_name: bridgehead-oauth2proxy
|
container_name: bridgehead-oauth2proxy
|
||||||
environment:
|
command: >-
|
||||||
- http_proxy=http://forward_proxy:3128
|
--allowed-group=DataSHIELD
|
||||||
- https_proxy=http://forward_proxy:3128
|
--oidc-groups-claim=${OIDC_GROUP_CLAIM}
|
||||||
- OAUTH2_PROXY_ALLOWED_GROUPS=DataSHIELD
|
--auth-logging=true
|
||||||
- OAUTH2_PROXY_OIDC_GROUPS_CLAIM=${OIDC_GROUP_CLAIM}
|
--whitelist-domain=${HOST}
|
||||||
- OAUTH2_PROXY_WHITELIST_DOMAIN=${HOST}
|
--http-address="0.0.0.0:4180"
|
||||||
- OAUTH2_PROXY_HTTP_ADDRESS=:4180
|
--reverse-proxy=true
|
||||||
- OAUTH2_PROXY_REVERSE_PROXY=true
|
--upstream="static://202"
|
||||||
- OAUTH2_PROXY_UPSTREAMS=static://202
|
--email-domain="*"
|
||||||
- OAUTH2_PROXY_EMAIL_DOMAINS=*
|
--cookie-name="_BRIDGEHEAD_oauth2"
|
||||||
- OAUTH2_PROXY_COOKIE_NAME=_BRIDGEHEAD_oauth2
|
--cookie-secret="${OAUTH2_PROXY_SECRET}"
|
||||||
- OAUTH2_PROXY_COOKIE_SECRET=${OAUTH2_PROXY_SECRET}
|
--cookie-expire="12h"
|
||||||
- OAUTH2_PROXY_COOKIE_EXPIRE=12h
|
--cookie-secure="true"
|
||||||
|
--cookie-httponly="true"
|
||||||
#OIDC settings
|
#OIDC settings
|
||||||
- OAUTH2_PROXY_PROVIDER=keycloak-oidc
|
--provider="keycloak-oidc"
|
||||||
- OAUTH2_PROXY_PROVIDER_DISPLAY_NAME="VerbIS Login"
|
--provider-display-name="VerbIS Login"
|
||||||
- OAUTH2_PROXY_CLIENT_ID=${OIDC_PRIVATE_CLIENT_ID}
|
--client-id="${OIDC_PRIVATE_CLIENT_ID}"
|
||||||
- OAUTH2_PROXY_CLIENT_SECRET=${OIDC_CLIENT_SECRET}
|
--client-secret="${OIDC_CLIENT_SECRET}"
|
||||||
- OAUTH2_PROXY_REDIRECT_URL="https://${HOST}${OAUTH2_CALLBACK}"
|
--redirect-url="https://${HOST}${OAUTH2_CALLBACK}"
|
||||||
- OAUTH2_PROXY_OIDC_ISSUER_URL=${OIDC_ISSUER_URL}
|
--oidc-issuer-url="${OIDC_ISSUER_URL}"
|
||||||
- OAUTH2_PROXY_SCOPE=openid profile email
|
--scope="openid email profile"
|
||||||
- OAUTH2_PROXY_CODE_CHALLENGE_METHOD=true
|
--code-challenge-method="S256"
|
||||||
- OAUTH2_PROXY_SKIP_PROVIDER_BUTTON=true
|
--skip-provider-button=true
|
||||||
#X-Forwarded-Header settings - true/false depending on your needs
|
#X-Forwarded-Header settings - true/false depending on your needs
|
||||||
- OAUTH2_PROXY_PASS_BASIC_AUTH=true
|
--pass-basic-auth=true
|
||||||
- OAUTH2_PROXY_PASS_USER_HEADERS=false
|
--pass-user-headers=false
|
||||||
- OAUTH2_PROXY_ACCESS_TOKEN=false
|
--pass-access-token=false
|
||||||
labels:
|
labels:
|
||||||
- "traefik.enable=true"
|
- "traefik.enable=true"
|
||||||
- "traefik.http.routers.oauth2_proxy.rule=PathPrefix(`/oauth2`)"
|
- "traefik.http.routers.oauth2_proxy.rule=PathPrefix(`/oauth2`)"
|
||||||
- "traefik.http.services.oauth2_proxy.loadbalancer.server.port=4180"
|
- "traefik.http.services.oauth2_proxy.loadbalancer.server.port=4180"
|
||||||
- "traefik.http.routers.oauth2_proxy.tls=true"
|
- "traefik.http.routers.oauth2_proxy.tls=true"
|
||||||
|
environment:
|
||||||
|
http_proxy: "http://forward_proxy:3128"
|
||||||
|
https_proxy: "http://forward_proxy:3128"
|
||||||
depends_on:
|
depends_on:
|
||||||
forward_proxy:
|
forward_proxy:
|
||||||
condition: service_healthy
|
condition: service_healthy
|
||||||
|
@ -3,7 +3,7 @@ version: "3.7"
|
|||||||
services:
|
services:
|
||||||
exporter:
|
exporter:
|
||||||
image: docker.verbis.dkfz.de/ccp/dktk-exporter:latest
|
image: docker.verbis.dkfz.de/ccp/dktk-exporter:latest
|
||||||
container_name: bridgehead-ccp-exporter
|
container_name: bridgehead-${PLATFORM}-exporter
|
||||||
environment:
|
environment:
|
||||||
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
||||||
LOG_LEVEL: "INFO"
|
LOG_LEVEL: "INFO"
|
||||||
@ -12,39 +12,39 @@ services:
|
|||||||
EXPORTER_DB_USER: "exporter"
|
EXPORTER_DB_USER: "exporter"
|
||||||
EXPORTER_DB_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
|
EXPORTER_DB_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
|
||||||
EXPORTER_DB_URL: "jdbc:postgresql://exporter-db:5432/exporter"
|
EXPORTER_DB_URL: "jdbc:postgresql://exporter-db:5432/exporter"
|
||||||
HTTP_RELATIVE_PATH: "/ccp-exporter"
|
HTTP_RELATIVE_PATH: "/${PLATFORM}-exporter"
|
||||||
SITE: "${SITE_ID}"
|
SITE: "${SITE_ID}"
|
||||||
HTTP_SERVLET_REQUEST_SCHEME: "https"
|
HTTP_SERVLET_REQUEST_SCHEME: "https"
|
||||||
OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
|
OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
|
||||||
labels:
|
labels:
|
||||||
- "traefik.enable=true"
|
- "traefik.enable=true"
|
||||||
- "traefik.http.routers.exporter_ccp.rule=PathPrefix(`/ccp-exporter`)"
|
- "traefik.http.routers.exporter_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-exporter`)"
|
||||||
- "traefik.http.services.exporter_ccp.loadbalancer.server.port=8092"
|
- "traefik.http.services.exporter_${PLATFORM}.loadbalancer.server.port=8092"
|
||||||
- "traefik.http.routers.exporter_ccp.tls=true"
|
- "traefik.http.routers.exporter_${PLATFORM}.tls=true"
|
||||||
- "traefik.http.middlewares.exporter_ccp_strip.stripprefix.prefixes=/ccp-exporter"
|
- "traefik.http.middlewares.exporter_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-exporter"
|
||||||
- "traefik.http.routers.exporter_ccp.middlewares=exporter_ccp_strip"
|
- "traefik.http.routers.exporter_${PLATFORM}.middlewares=exporter_${PLATFORM}_strip"
|
||||||
volumes:
|
volumes:
|
||||||
- "/var/cache/bridgehead/ccp/exporter-files:/app/exporter-files/output"
|
- "/var/cache/bridgehead/${PLATFORM}/exporter-files:/app/exporter-files/output"
|
||||||
|
|
||||||
exporter-db:
|
exporter-db:
|
||||||
image: docker.verbis.dkfz.de/cache/postgres:${POSTGRES_TAG}
|
image: docker.verbis.dkfz.de/cache/postgres:${POSTGRES_TAG}
|
||||||
container_name: bridgehead-ccp-exporter-db
|
container_name: bridgehead-${PLATFORM}-exporter-db
|
||||||
environment:
|
environment:
|
||||||
POSTGRES_USER: "exporter"
|
POSTGRES_USER: "exporter"
|
||||||
POSTGRES_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
|
POSTGRES_PASSWORD: "${EXPORTER_DB_PASSWORD}" # Set in exporter-setup.sh
|
||||||
POSTGRES_DB: "exporter"
|
POSTGRES_DB: "exporter"
|
||||||
volumes:
|
volumes:
|
||||||
# Consider removing this volume once we find a solution to save Lens-queries to be executed in the explorer.
|
# Consider removing this volume once we find a solution to save Lens-queries to be executed in the explorer.
|
||||||
- "/var/cache/bridgehead/ccp/exporter-db:/var/lib/postgresql/data"
|
- "/var/cache/bridgehead/${PLATFORM}/exporter-db:/var/lib/postgresql/data"
|
||||||
|
|
||||||
reporter:
|
reporter:
|
||||||
image: docker.verbis.dkfz.de/ccp/dktk-reporter:latest
|
image: docker.verbis.dkfz.de/ccp/dktk-reporter:latest
|
||||||
container_name: bridgehead-ccp-reporter
|
container_name: bridgehead-${PLATFORM}-reporter
|
||||||
environment:
|
environment:
|
||||||
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
|
||||||
LOG_LEVEL: "INFO"
|
LOG_LEVEL: "INFO"
|
||||||
CROSS_ORIGINS: "https://${HOST}"
|
CROSS_ORIGINS: "https://${HOST}"
|
||||||
HTTP_RELATIVE_PATH: "/ccp-reporter"
|
HTTP_RELATIVE_PATH: "/${PLATFORM}-reporter"
|
||||||
SITE: "${SITE_ID}"
|
SITE: "${SITE_ID}"
|
||||||
EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
|
EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
|
||||||
EXPORTER_URL: "http://exporter:8092"
|
EXPORTER_URL: "http://exporter:8092"
|
||||||
@ -57,11 +57,11 @@ services:
|
|||||||
# There is a risk that the bridgehead restarts, losing the already created export.
|
# There is a risk that the bridgehead restarts, losing the already created export.
|
||||||
|
|
||||||
volumes:
|
volumes:
|
||||||
- "/var/cache/bridgehead/ccp/reporter-files:/app/reports"
|
- "/var/cache/bridgehead/${PLATFORM}/reporter-files:/app/reports"
|
||||||
labels:
|
labels:
|
||||||
- "traefik.enable=true"
|
- "traefik.enable=true"
|
||||||
- "traefik.http.routers.reporter_ccp.rule=PathPrefix(`/ccp-reporter`)"
|
- "traefik.http.routers.reporter_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-reporter`)"
|
||||||
- "traefik.http.services.reporter_ccp.loadbalancer.server.port=8095"
|
- "traefik.http.services.reporter_${PLATFORM}.loadbalancer.server.port=8095"
|
||||||
- "traefik.http.routers.reporter_ccp.tls=true"
|
- "traefik.http.routers.reporter_${PLATFORM}.tls=true"
|
||||||
- "traefik.http.middlewares.reporter_ccp_strip.stripprefix.prefixes=/ccp-reporter"
|
- "traefik.http.middlewares.reporter_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-reporter"
|
||||||
- "traefik.http.routers.reporter_ccp.middlewares=reporter_ccp_strip"
|
- "traefik.http.routers.reporter_${PLATFORM}.middlewares=reporter_${PLATFORM}_strip"
|
||||||
|
@ -2,7 +2,7 @@
|
|||||||
|
|
||||||
if [ "$ENABLE_EXPORTER" == true ]; then
|
if [ "$ENABLE_EXPORTER" == true ]; then
|
||||||
log INFO "Exporter setup detected -- will start Exporter service."
|
log INFO "Exporter setup detected -- will start Exporter service."
|
||||||
OVERRIDE+=" -f ./$PROJECT/modules/exporter-compose.yml"
|
OVERRIDE+=" -f ./ccp/modules/exporter-compose.yml"
|
||||||
EXPORTER_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password for the exporter. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
|
EXPORTER_DB_PASSWORD="$(echo \"This is a salt string to generate one consistent password for the exporter. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
|
||||||
EXPORTER_API_KEY="$(echo \"This is a salt string to generate one consistent API KEY for the exporter. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 64)"
|
EXPORTER_API_KEY="$(echo \"This is a salt string to generate one consistent API KEY for the exporter. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 64)"
|
||||||
fi
|
fi
|
||||||
|
@ -7,30 +7,31 @@ services:
|
|||||||
container_name: bridgehead-teiler-orchestrator
|
container_name: bridgehead-teiler-orchestrator
|
||||||
labels:
|
labels:
|
||||||
- "traefik.enable=true"
|
- "traefik.enable=true"
|
||||||
- "traefik.http.routers.teiler_orchestrator_ccp.rule=PathPrefix(`/ccp-teiler`)"
|
- "traefik.http.routers.teiler_orchestrator_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-teiler`)"
|
||||||
- "traefik.http.services.teiler_orchestrator_ccp.loadbalancer.server.port=9000"
|
- "traefik.http.services.teiler_orchestrator_${PLATFORM}.loadbalancer.server.port=9000"
|
||||||
- "traefik.http.routers.teiler_orchestrator_ccp.tls=true"
|
- "traefik.http.routers.teiler_orchestrator_${PLATFORM}.tls=true"
|
||||||
- "traefik.http.middlewares.teiler_orchestrator_ccp_strip.stripprefix.prefixes=/ccp-teiler"
|
- "traefik.http.middlewares.teiler_orchestrator_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-teiler"
|
||||||
- "traefik.http.routers.teiler_orchestrator_ccp.middlewares=teiler_orchestrator_ccp_strip"
|
- "traefik.http.routers.teiler_orchestrator_${PLATFORM}.middlewares=teiler_orchestrator_${PLATFORM}_strip"
|
||||||
environment:
|
environment:
|
||||||
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
|
TEILER_BACKEND_URL: "https://${HOST}/${PLATFORM}-teiler-backend"
|
||||||
TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
|
TEILER_DASHBOARD_URL: "https://${HOST}/${PLATFORM}-teiler-dashboard"
|
||||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
|
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
|
||||||
HTTP_RELATIVE_PATH: "/ccp-teiler"
|
HTTP_RELATIVE_PATH: "/${PLATFORM}-teiler"
|
||||||
|
|
||||||
teiler-dashboard:
|
teiler-dashboard:
|
||||||
image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
|
#image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
|
||||||
|
image: docker.verbis.dkfz.de/ccp/samply/teiler-dashboard:bbmri
|
||||||
container_name: bridgehead-teiler-dashboard
|
container_name: bridgehead-teiler-dashboard
|
||||||
labels:
|
labels:
|
||||||
- "traefik.enable=true"
|
- "traefik.enable=true"
|
||||||
- "traefik.http.routers.teiler_dashboard_ccp.rule=PathPrefix(`/ccp-teiler-dashboard`)"
|
- "traefik.http.routers.teiler_dashboard_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-teiler-dashboard`)"
|
||||||
- "traefik.http.services.teiler_dashboard_ccp.loadbalancer.server.port=80"
|
- "traefik.http.services.teiler_dashboard_${PLATFORM}.loadbalancer.server.port=80"
|
||||||
- "traefik.http.routers.teiler_dashboard_ccp.tls=true"
|
- "traefik.http.routers.teiler_dashboard_${PLATFORM}.tls=true"
|
||||||
- "traefik.http.middlewares.teiler_dashboard_ccp_strip.stripprefix.prefixes=/ccp-teiler-dashboard"
|
- "traefik.http.middlewares.teiler_dashboard_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-teiler-dashboard"
|
||||||
- "traefik.http.routers.teiler_dashboard_ccp.middlewares=teiler_dashboard_ccp_strip"
|
- "traefik.http.routers.teiler_dashboard_${PLATFORM}.middlewares=teiler_dashboard_${PLATFORM}_strip"
|
||||||
environment:
|
environment:
|
||||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||||
TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
|
TEILER_BACKEND_URL: "https://${HOST}/${PLATFORM}-teiler-backend"
|
||||||
OIDC_URL: "${OIDC_URL}"
|
OIDC_URL: "${OIDC_URL}"
|
||||||
OIDC_REALM: "${OIDC_REALM}"
|
OIDC_REALM: "${OIDC_REALM}"
|
||||||
OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
|
OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
|
||||||
@ -40,42 +41,42 @@ services:
|
|||||||
TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
|
TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
|
||||||
TEILER_PROJECT: "${PROJECT}"
|
TEILER_PROJECT: "${PROJECT}"
|
||||||
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
|
EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
|
||||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
|
TEILER_ORCHESTRATOR_URL: "https://${HOST}/${PLATFORM}-teiler"
|
||||||
TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/ccp-teiler-dashboard"
|
TEILER_DASHBOARD_HTTP_RELATIVE_PATH: "/${PLATFORM}-teiler-dashboard"
|
||||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
|
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/${PLATFORM}-teiler"
|
||||||
TEILER_USER: "${OIDC_USER_GROUP}"
|
TEILER_USER: "${OIDC_USER_GROUP}"
|
||||||
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
|
TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
|
||||||
REPORTER_DEFAULT_TEMPLATE_ID: "ccp-qb"
|
REPORTER_DEFAULT_TEMPLATE_ID: "${PLATFORM}-qb"
|
||||||
EXPORTER_DEFAULT_TEMPLATE_ID: "ccp"
|
EXPORTER_DEFAULT_TEMPLATE_ID: "${PLATFORM}"
|
||||||
|
|
||||||
|
|
||||||
teiler-backend:
|
teiler-backend:
|
||||||
image: docker.verbis.dkfz.de/ccp/dktk-teiler-backend:latest
|
image: docker.verbis.dkfz.de/ccp/${PROJECT}-teiler-backend:latest
|
||||||
container_name: bridgehead-teiler-backend
|
container_name: bridgehead-teiler-backend
|
||||||
labels:
|
labels:
|
||||||
- "traefik.enable=true"
|
- "traefik.enable=true"
|
||||||
- "traefik.http.routers.teiler_backend_ccp.rule=PathPrefix(`/ccp-teiler-backend`)"
|
- "traefik.http.routers.teiler_backend_${PLATFORM}.rule=PathPrefix(`/${PLATFORM}-teiler-backend`)"
|
||||||
- "traefik.http.services.teiler_backend_ccp.loadbalancer.server.port=8085"
|
- "traefik.http.services.teiler_backend_${PLATFORM}.loadbalancer.server.port=8085"
|
||||||
- "traefik.http.routers.teiler_backend_ccp.tls=true"
|
- "traefik.http.routers.teiler_backend_${PLATFORM}.tls=true"
|
||||||
- "traefik.http.middlewares.teiler_backend_ccp_strip.stripprefix.prefixes=/ccp-teiler-backend"
|
- "traefik.http.middlewares.teiler_backend_${PLATFORM}_strip.stripprefix.prefixes=/${PLATFORM}-teiler-backend"
|
||||||
- "traefik.http.routers.teiler_backend_ccp.middlewares=teiler_backend_ccp_strip"
|
- "traefik.http.routers.teiler_backend_${PLATFORM}.middlewares=teiler_backend_${PLATFORM}_strip"
|
||||||
environment:
|
environment:
|
||||||
LOG_LEVEL: "INFO"
|
LOG_LEVEL: "INFO"
|
||||||
APPLICATION_PORT: "8085"
|
APPLICATION_PORT: "8085"
|
||||||
APPLICATION_ADDRESS: "${HOST}"
|
APPLICATION_ADDRESS: "${HOST}"
|
||||||
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
|
||||||
CONFIG_ENV_VAR_PATH: "/run/secrets/ccp.conf"
|
CONFIG_ENV_VAR_PATH: "/run/secrets/project-conf"
|
||||||
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
|
TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/${PLATFORM}-teiler"
|
||||||
TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
|
TEILER_ORCHESTRATOR_URL: "https://${HOST}/${PLATFORM}-teiler"
|
||||||
TEILER_DASHBOARD_DE_URL: "https://${HOST}/ccp-teiler-dashboard/de"
|
TEILER_DASHBOARD_DE_URL: "https://${HOST}/${PLATFORM}-teiler-dashboard/de"
|
||||||
TEILER_DASHBOARD_EN_URL: "https://${HOST}/ccp-teiler-dashboard/en"
|
TEILER_DASHBOARD_EN_URL: "https://${HOST}/${PLATFORM}-teiler-dashboard/en"
|
||||||
CENTRAX_URL: "${CENTRAXX_URL}"
|
CENTRAX_URL: "${CENTRAXX_URL}"
|
||||||
HTTP_PROXY: "http://forward_proxy:3128"
|
HTTP_PROXY: "http://forward_proxy:3128"
|
||||||
ENABLE_MTBA: "${ENABLE_MTBA}"
|
ENABLE_MTBA: "${ENABLE_MTBA}"
|
||||||
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
|
ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
|
||||||
secrets:
|
secrets:
|
||||||
- ccp.conf
|
- project-conf
|
||||||
|
|
||||||
secrets:
|
secrets:
|
||||||
ccp.conf:
|
project-conf:
|
||||||
file: /etc/bridgehead/ccp.conf
|
file: "/etc/bridgehead/${PROJECT}.conf"
|
||||||
|
@ -2,7 +2,7 @@
|
|||||||
|
|
||||||
if [ "$ENABLE_TEILER" == true ];then
|
if [ "$ENABLE_TEILER" == true ];then
|
||||||
log INFO "Teiler setup detected -- will start Teiler services."
|
log INFO "Teiler setup detected -- will start Teiler services."
|
||||||
OVERRIDE+=" -f ./$PROJECT/modules/teiler-compose.yml"
|
OVERRIDE+=" -f ./ccp/modules/teiler-compose.yml"
|
||||||
TEILER_DEFAULT_LANGUAGE=DE
|
TEILER_DEFAULT_LANGUAGE=DE
|
||||||
TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,}
|
TEILER_DEFAULT_LANGUAGE_LOWER_CASE=${TEILER_DEFAULT_LANGUAGE,,}
|
||||||
add_public_oidc_redirect_url "/ccp-teiler/*"
|
add_public_oidc_redirect_url "/ccp-teiler/*"
|
||||||
|
3
ccp/vars
3
ccp/vars
@ -5,6 +5,7 @@ FOCUS_BEAM_SECRET_SHORT="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | h
|
|||||||
FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
|
FOCUS_RETRY_COUNT=${FOCUS_RETRY_COUNT:-64}
|
||||||
SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de
|
SUPPORT_EMAIL=support-ccp@dkfz-heidelberg.de
|
||||||
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
|
PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
|
||||||
|
PLATFORM=ccp
|
||||||
|
|
||||||
BROKER_URL_FOR_PREREQ=$BROKER_URL
|
BROKER_URL_FOR_PREREQ=$BROKER_URL
|
||||||
|
|
||||||
@ -29,4 +30,4 @@ done
|
|||||||
idManagementSetup
|
idManagementSetup
|
||||||
mtbaSetup
|
mtbaSetup
|
||||||
obds2fhirRestSetup
|
obds2fhirRestSetup
|
||||||
blazeSecondarySetup
|
blazeSecondarySetup
|
||||||
|
@ -1,6 +1,10 @@
|
|||||||
version: "3.7"
|
version: "3.7"
|
||||||
|
|
||||||
services:
|
services:
|
||||||
|
landing:
|
||||||
|
deploy:
|
||||||
|
replicas: 0 #deactivate landing page
|
||||||
|
|
||||||
blaze:
|
blaze:
|
||||||
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
|
image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
|
||||||
container_name: bridgehead-kr-blaze
|
container_name: bridgehead-kr-blaze
|
||||||
|
@ -1,6 +1,8 @@
|
|||||||
version: "3.7"
|
version: "3.7"
|
||||||
services:
|
services:
|
||||||
landing:
|
landing:
|
||||||
|
deploy:
|
||||||
|
replicas: 1 #reactivate if lens is in use
|
||||||
container_name: lens_federated-search
|
container_name: lens_federated-search
|
||||||
image: docker.verbis.dkfz.de/ccp/lens:${SITE_ID}
|
image: docker.verbis.dkfz.de/ccp/lens:${SITE_ID}
|
||||||
labels:
|
labels:
|
||||||
|
@ -171,8 +171,10 @@ optimizeBlazeMemoryUsage() {
|
|||||||
if [ $available_system_memory_chunks -eq 0 ]; then
|
if [ $available_system_memory_chunks -eq 0 ]; then
|
||||||
log WARN "Only ${BLAZE_MEMORY_CAP} system memory available for Blaze. If your Blaze stores more than 128000 fhir ressources it will run significally slower."
|
log WARN "Only ${BLAZE_MEMORY_CAP} system memory available for Blaze. If your Blaze stores more than 128000 fhir ressources it will run significally slower."
|
||||||
export BLAZE_RESOURCE_CACHE_CAP=128000;
|
export BLAZE_RESOURCE_CACHE_CAP=128000;
|
||||||
|
export BLAZE_CQL_CACHE_CAP=32;
|
||||||
else
|
else
|
||||||
export BLAZE_RESOURCE_CACHE_CAP=$((available_system_memory_chunks * 312500))
|
export BLAZE_RESOURCE_CACHE_CAP=$((available_system_memory_chunks * 312500))
|
||||||
|
export BLAZE_CQL_CACHE_CAP=$((($system_memory_in_mb/4)/16));
|
||||||
fi
|
fi
|
||||||
fi
|
fi
|
||||||
}
|
}
|
||||||
|
Reference in New Issue
Block a user