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https://github.com/samply/bridgehead.git
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1 Commits
refactor/l
...
feature/op
Author | SHA1 | Date | |
---|---|---|---|
d9208c4be2 |
@ -11,7 +11,6 @@ services:
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DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
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DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
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CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
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CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
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ENFORCE_REFERENTIAL_INTEGRITY: "false"
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ENFORCE_REFERENTIAL_INTEGRITY: "false"
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LOG_LEVEL: ${LOG_LEVEL_BLAZE:-WARN}
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volumes:
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volumes:
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- "blaze-data:/app/data"
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- "blaze-data:/app/data"
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labels:
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labels:
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@ -35,7 +34,6 @@ services:
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EPSILON: 0.28
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EPSILON: 0.28
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QUERIES_TO_CACHE: '/queries_to_cache.conf'
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QUERIES_TO_CACHE: '/queries_to_cache.conf'
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ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
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ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
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RUST_LOG: ${LOG_LEVEL_FOCUS:-WARN}
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volumes:
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volumes:
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- /srv/docker/bridgehead/ccp/queries_to_cache.conf:/queries_to_cache.conf
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- /srv/docker/bridgehead/ccp/queries_to_cache.conf:/queries_to_cache.conf
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depends_on:
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depends_on:
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@ -53,7 +51,6 @@ services:
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ALL_PROXY: http://forward_proxy:3128
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ALL_PROXY: http://forward_proxy:3128
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TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
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TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
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ROOTCERT_FILE: /conf/root.crt.pem
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ROOTCERT_FILE: /conf/root.crt.pem
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RUST_LOG: ${LOG_LEVEL_FOCUS:-WARN}
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secrets:
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secrets:
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- proxy.pem
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- proxy.pem
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depends_on:
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depends_on:
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@ -10,7 +10,6 @@ services:
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DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
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DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
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DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
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DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
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ENFORCE_REFERENTIAL_INTEGRITY: "false"
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ENFORCE_REFERENTIAL_INTEGRITY: "false"
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LOG_LEVEL: ${LOG_LEVEL_BLAZE:-WARN}
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volumes:
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volumes:
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- "blaze-secondary-data:/app/data"
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- "blaze-secondary-data:/app/data"
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labels:
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labels:
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@ -10,7 +10,6 @@ services:
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DISABLE_AUTH: "true" # https://rocker-project.org/images/versioned/rstudio.html#how-to-use
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DISABLE_AUTH: "true" # https://rocker-project.org/images/versioned/rstudio.html#how-to-use
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HTTP_RELATIVE_PATH: "/rstudio"
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HTTP_RELATIVE_PATH: "/rstudio"
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ALL_PROXY: "http://forward_proxy:3128" # https://rocker-project.org/use/networking.html
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ALL_PROXY: "http://forward_proxy:3128" # https://rocker-project.org/use/networking.html
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LOG_LEVEL: ${LOG_LEVEL_RSTUDIO:-WARN}
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labels:
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labels:
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- "traefik.enable=true"
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- "traefik.enable=true"
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- "traefik.http.routers.rstudio_ccp.rule=PathPrefix(`/rstudio`)"
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- "traefik.http.routers.rstudio_ccp.rule=PathPrefix(`/rstudio`)"
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@ -23,7 +22,7 @@ services:
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opal:
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opal:
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container_name: bridgehead-opal
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container_name: bridgehead-opal
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image: docker.verbis.dkfz.de/ccp/dktk-opal:latest
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image: docker.verbis.dkfz.de/ccp/dktk-opal:test
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labels:
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labels:
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- "traefik.enable=true"
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- "traefik.enable=true"
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- "traefik.http.routers.opal_ccp.rule=PathPrefix(`/opal`)"
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- "traefik.http.routers.opal_ccp.rule=PathPrefix(`/opal`)"
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@ -55,7 +54,6 @@ services:
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BEAM_APP_ID: token-manager.${PROXY_ID}
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BEAM_APP_ID: token-manager.${PROXY_ID}
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BEAM_SECRET: ${TOKEN_MANAGER_SECRET}
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BEAM_SECRET: ${TOKEN_MANAGER_SECRET}
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BEAM_DATASHIELD_PROXY: request-manager
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BEAM_DATASHIELD_PROXY: request-manager
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LOG_LEVEL: ${LOG_LEVEL_OPAL:-WARN}
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volumes:
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volumes:
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- "/var/cache/bridgehead/ccp/opal-metadata-db:/srv" # Opal metadata
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- "/var/cache/bridgehead/ccp/opal-metadata-db:/srv" # Opal metadata
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secrets:
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secrets:
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@ -77,8 +75,6 @@ services:
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image: docker.verbis.dkfz.de/ccp/dktk-rserver # datashield/rock-base + dsCCPhos
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image: docker.verbis.dkfz.de/ccp/dktk-rserver # datashield/rock-base + dsCCPhos
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tmpfs:
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tmpfs:
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- /srv
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- /srv
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environment:
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LOG_LEVEL: ${LOG_LEVEL_OPAL:-WARN}
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beam-connect:
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beam-connect:
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image: docker.verbis.dkfz.de/cache/samply/beam-connect:develop
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image: docker.verbis.dkfz.de/cache/samply/beam-connect:develop
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@ -91,7 +87,6 @@ services:
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DISCOVERY_URL: "./map/central.json"
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DISCOVERY_URL: "./map/central.json"
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LOCAL_TARGETS_FILE: "./map/local.json"
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LOCAL_TARGETS_FILE: "./map/local.json"
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NO_AUTH: "true"
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NO_AUTH: "true"
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RUST_LOG: ${LOG_LEVEL_BEAMCONNECT:-WARN}
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secrets:
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secrets:
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- opal-cert.pem
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- opal-cert.pem
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depends_on:
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depends_on:
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@ -17,7 +17,7 @@ services:
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HTTP_PROXY: "http://forward_proxy:3128"
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HTTP_PROXY: "http://forward_proxy:3128"
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HTTPS_PROXY: "http://forward_proxy:3128"
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HTTPS_PROXY: "http://forward_proxy:3128"
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NO_PROXY: beam-proxy,dnpm-backend,host.docker.internal${DNPM_ADDITIONAL_NO_PROXY}
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NO_PROXY: beam-proxy,dnpm-backend,host.docker.internal${DNPM_ADDITIONAL_NO_PROXY}
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RUST_LOG: ${LOG_LEVEL_BEAMCONNECTDNPM:-WARN}
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RUST_LOG: ${RUST_LOG:-info}
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NO_AUTH: "true"
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NO_AUTH: "true"
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TLS_CA_CERTIFICATES_DIR: ./conf/trusted-ca-certs
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TLS_CA_CERTIFICATES_DIR: ./conf/trusted-ca-certs
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extra_hosts:
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extra_hosts:
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@ -6,6 +6,7 @@ services:
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container_name: bridgehead-ccp-exporter
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container_name: bridgehead-ccp-exporter
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environment:
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environment:
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JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
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JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
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LOG_LEVEL: "INFO"
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EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
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EXPORTER_API_KEY: "${EXPORTER_API_KEY}" # Set in exporter-setup.sh
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CROSS_ORIGINS: "https://${HOST}"
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CROSS_ORIGINS: "https://${HOST}"
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EXPORTER_DB_USER: "exporter"
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EXPORTER_DB_USER: "exporter"
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@ -15,7 +16,6 @@ services:
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SITE: "${SITE_ID}"
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SITE: "${SITE_ID}"
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HTTP_SERVLET_REQUEST_SCHEME: "https"
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HTTP_SERVLET_REQUEST_SCHEME: "https"
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OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
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OPAL_PASSWORD: "${EXPORTER_OPAL_PASSWORD}"
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LOG_LEVEL: ${LOG_LEVEL_EXPORTER:-WARN}
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labels:
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labels:
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- "traefik.enable=true"
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- "traefik.enable=true"
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- "traefik.http.routers.exporter_ccp.rule=PathPrefix(`/ccp-exporter`)"
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- "traefik.http.routers.exporter_ccp.rule=PathPrefix(`/ccp-exporter`)"
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@ -42,6 +42,7 @@ services:
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container_name: bridgehead-ccp-reporter
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container_name: bridgehead-ccp-reporter
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environment:
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environment:
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JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
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JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
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LOG_LEVEL: "INFO"
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CROSS_ORIGINS: "https://${HOST}"
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CROSS_ORIGINS: "https://${HOST}"
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HTTP_RELATIVE_PATH: "/ccp-reporter"
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HTTP_RELATIVE_PATH: "/ccp-reporter"
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SITE: "${SITE_ID}"
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SITE: "${SITE_ID}"
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@ -49,7 +50,6 @@ services:
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EXPORTER_URL: "http://exporter:8092"
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EXPORTER_URL: "http://exporter:8092"
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LOG_FHIR_VALIDATION: "false"
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LOG_FHIR_VALIDATION: "false"
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HTTP_SERVLET_REQUEST_SCHEME: "https"
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HTTP_SERVLET_REQUEST_SCHEME: "https"
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LOG_LEVEL: ${LOG_LEVEL_REPORTER:-WARN}
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# In this initial development state of the bridgehead, we are trying to have so many volumes as possible.
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# In this initial development state of the bridgehead, we are trying to have so many volumes as possible.
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# However, in the first executions in the CCP sites, this volume seems to be very important. A report is
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# However, in the first executions in the CCP sites, this volume seems to be very important. A report is
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@ -14,7 +14,6 @@ services:
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MAGICPL_CONNECTOR_APIKEY: ${IDMANAGER_READ_APIKEY}
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MAGICPL_CONNECTOR_APIKEY: ${IDMANAGER_READ_APIKEY}
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MAGICPL_CENTRAL_PATIENTLIST_APIKEY: ${IDMANAGER_CENTRAL_PATIENTLIST_APIKEY}
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MAGICPL_CENTRAL_PATIENTLIST_APIKEY: ${IDMANAGER_CENTRAL_PATIENTLIST_APIKEY}
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MAGICPL_CONTROLNUMBERGENERATOR_APIKEY: ${IDMANAGER_CONTROLNUMBERGENERATOR_APIKEY}
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MAGICPL_CONTROLNUMBERGENERATOR_APIKEY: ${IDMANAGER_CONTROLNUMBERGENERATOR_APIKEY}
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ML_LOG_LEVEL: ${LOG_LEVEL_IDMANAGER:-WARN}
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depends_on:
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depends_on:
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- patientlist
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- patientlist
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- traefik-forward-auth
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- traefik-forward-auth
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@ -45,8 +44,6 @@ services:
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- ML_UPLOAD_API_KEY=${IDMANAGER_UPLOAD_APIKEY}
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- ML_UPLOAD_API_KEY=${IDMANAGER_UPLOAD_APIKEY}
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# Add Variables from /etc/patientlist-id-generators.env
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# Add Variables from /etc/patientlist-id-generators.env
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- PATIENTLIST_SEEDS_TRANSFORMED
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- PATIENTLIST_SEEDS_TRANSFORMED
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- ML_LOG_LEVEL=${LOG_LEVEL_PATIENTLIST:-WARN}
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#TODO confirm LOG_LEVEL
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labels:
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labels:
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- "traefik.enable=true"
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- "traefik.enable=true"
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- "traefik.http.routers.patientlist.rule=PathPrefix(`/patientlist`)"
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- "traefik.http.routers.patientlist.rule=PathPrefix(`/patientlist`)"
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@ -25,7 +25,6 @@ services:
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OIDC_CLIENT_SECRET: "${OIDC_CLIENT_SECRET}"
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OIDC_CLIENT_SECRET: "${OIDC_CLIENT_SECRET}"
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OIDC_REALM: "${OIDC_REALM}"
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OIDC_REALM: "${OIDC_REALM}"
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OIDC_URL: "${OIDC_URL}"
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OIDC_URL: "${OIDC_URL}"
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LOG_LEVEL: ${LOG_LEVEL_MTBA:-WARN}
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labels:
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labels:
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- "traefik.enable=true"
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- "traefik.enable=true"
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@ -12,7 +12,6 @@ services:
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CTS_API_KEY: ${NNGM_CTS_APIKEY}
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CTS_API_KEY: ${NNGM_CTS_APIKEY}
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CRYPT_KEY: ${NNGM_CRYPTKEY}
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CRYPT_KEY: ${NNGM_CRYPTKEY}
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#CTS_MAGICPL_SITE: ${SITE_ID}TODO
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#CTS_MAGICPL_SITE: ${SITE_ID}TODO
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LOG_LEVEL: ${LOG_LEVEL_NNGM:-WARN}
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restart: always
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restart: always
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labels:
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labels:
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- "traefik.enable=true"
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- "traefik.enable=true"
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@ -10,7 +10,6 @@ services:
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SALT: ${LOCAL_SALT}
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SALT: ${LOCAL_SALT}
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KEEP_INTERNAL_ID: ${KEEP_INTERNAL_ID:-false}
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KEEP_INTERNAL_ID: ${KEEP_INTERNAL_ID:-false}
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MAINZELLISTE_URL: ${PATIENTLIST_URL:-http://patientlist:8080/patientlist}
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MAINZELLISTE_URL: ${PATIENTLIST_URL:-http://patientlist:8080/patientlist}
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LOG_LEVEL: ${LOG_LEVEL_REPORTER:-WARN}
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restart: always
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restart: always
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labels:
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labels:
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- "traefik.enable=true"
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- "traefik.enable=true"
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@ -17,7 +17,6 @@ services:
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TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
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TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
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DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
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DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
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HTTP_RELATIVE_PATH: "/ccp-teiler"
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HTTP_RELATIVE_PATH: "/ccp-teiler"
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LOG_LEVEL: ${LOG_LEVEL_TEILER:-WARN}
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teiler-dashboard:
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teiler-dashboard:
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image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
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image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
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@ -48,7 +47,6 @@ services:
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TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
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TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
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REPORTER_DEFAULT_TEMPLATE_ID: "ccp-qb"
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REPORTER_DEFAULT_TEMPLATE_ID: "ccp-qb"
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EXPORTER_DEFAULT_TEMPLATE_ID: "ccp"
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EXPORTER_DEFAULT_TEMPLATE_ID: "ccp"
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LOG_LEVEL: ${LOG_LEVEL_TEILER:-WARN}
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teiler-backend:
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teiler-backend:
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@ -62,6 +60,7 @@ services:
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- "traefik.http.middlewares.teiler_backend_ccp_strip.stripprefix.prefixes=/ccp-teiler-backend"
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- "traefik.http.middlewares.teiler_backend_ccp_strip.stripprefix.prefixes=/ccp-teiler-backend"
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- "traefik.http.routers.teiler_backend_ccp.middlewares=teiler_backend_ccp_strip"
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- "traefik.http.routers.teiler_backend_ccp.middlewares=teiler_backend_ccp_strip"
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environment:
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environment:
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LOG_LEVEL: "INFO"
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APPLICATION_PORT: "8085"
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APPLICATION_PORT: "8085"
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APPLICATION_ADDRESS: "${HOST}"
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APPLICATION_ADDRESS: "${HOST}"
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DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
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DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
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@ -74,7 +73,6 @@ services:
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HTTP_PROXY: "http://forward_proxy:3128"
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HTTP_PROXY: "http://forward_proxy:3128"
|
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ENABLE_MTBA: "${ENABLE_MTBA}"
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ENABLE_MTBA: "${ENABLE_MTBA}"
|
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ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
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ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"
|
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LOG_LEVEL: ${LOG_LEVEL_TEILER:-WARN}
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|
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secrets:
|
secrets:
|
||||||
- ccp.conf
|
- ccp.conf
|
||||||
|
|
||||||
|
Reference in New Issue
Block a user