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7 Commits
test/expor
...
test/onkof
Author | SHA1 | Date | |
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2aad2ca9bf | |||
0c5298b2a3 | |||
4537bcf235 | |||
f7b6dad0d2 | |||
1e513113fe | |||
e433a234f7 | |||
4969360e49 |
20
minimal/modules/onko.root.pem
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20
minimal/modules/onko.root.pem
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@ -0,0 +1,20 @@
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-----BEGIN CERTIFICATE-----
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MIIDNTCCAh2gAwIBAgIUcGXxIZMxUOoI2kf8FArsOvQfvwwwDQYJKoZIhvcNAQEL
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BQAwFjEUMBIGA1UEAxMLQnJva2VyLVJvb3QwHhcNMjQxMDMxMDkxOTUwWhcNMzQx
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MDI5MDkyMDIwWjAWMRQwEgYDVQQDEwtCcm9rZXItUm9vdDCCASIwDQYJKoZIhvcN
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AQEBBQADggEPADCCAQoCggEBALX+8X4r2mWki4HLs2E5dXR9oGL+8Zos1s9Rmeaz
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FgxnpKf6wlop4ZlJd01Pgi3HNFo7XPFi76zalRsHS+rWN3tOy6r5KIjCYiqPb3AY
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luZuy7jAQOBGHKODVfJH1QCRqsvEwRbOU6nNFAkMcjSxt5+PmwB1U7+Kvmly4sYI
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i4t/gyVvcfEsiZ5LYQ7IpEf+or2Ugpb6j4KlTn+gKFzSfgl+yRhE0bnFEf0eBa+r
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HLLpq4hL16+pb6/WZ4DfM9QDioX6Tj2Hje9Va4RJ2dROENuq5sJugdE28hH9qEwE
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2bmKh6qvblgwkI3rJFkYH+scBtLEUH0KJY+SZ1iYHkoEaCkCAwEAAaN7MHkwDgYD
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VR0PAQH/BAQDAgEGMA8GA1UdEwEB/wQFMAMBAf8wHQYDVR0OBBYEFOe/txl3B7Sd
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NFE+615Z3rfzqBR4MB8GA1UdIwQYMBaAFOe/txl3B7SdNFE+615Z3rfzqBR4MBYG
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A1UdEQQPMA2CC0Jyb2tlci1Sb290MA0GCSqGSIb3DQEBCwUAA4IBAQA3kVJlBOHn
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Tscsk1FKLYNWE/fr3oUNPUYzXi4lln+UNdRHSdXUPzBp4B5oIi3uymdYg2Rzq9Su
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/xjE7++thgQJ37l/DpCm/TUmUFfH5ZqcaMPA+L21mw9G129teCP1nVuXjtYhwnBk
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fRiz1tzpO1rZCxC+vxIhcPeYSKbaAQTywtJu0MpduGFrfIwLtrxa4GLRQFD06KPx
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Ijq6Pt6kC2abcYtKCMCWmpzttQAq4csWbmWINKkD6GMkuJVpzEx3csg8rCyPCaX0
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HedLiKRqaSOzDRnIWfD2CQX6qMg8TNtnxFnZTlc9honxnwcGaeLZKNEg+1oPA40V
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NOffBIMF4DAV
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-----END CERTIFICATE-----
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91
minimal/modules/onkofdz-compose.yml
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91
minimal/modules/onkofdz-compose.yml
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@ -0,0 +1,91 @@
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version: "3.7"
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services:
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beam-proxy:
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image: samply/beam-proxy:develop-sockets
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container_name: bridgehead-beam-proxy
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environment:
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BROKER_URL: ${BROKER_URL}
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PROXY_ID: ${PROXY_ID}
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PRIVKEY_FILE: /run/secrets/proxy.pem
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ALL_PROXY: http://forward_proxy:3128
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TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
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ROOTCERT_FILE: /conf/root.crt.pem
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APP_beamsel_KEY: ${BEAMSEL_SECRET}
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secrets:
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- proxy.pem
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depends_on:
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- "forward_proxy"
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volumes:
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- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
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- /srv/docker/bridgehead/minimal/modules/onko.root.pem:/conf/root.crt.pem:ro
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postgres:
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image: postgres:9.5-alpine
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container_name: bridgehead-onkofdz-postgres
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environment:
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POSTGRES_DB: mainzelliste-sel
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POSTGRES_USER: mainzelliste-sel
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POSTGRES_PASSWORD: ${MAINZELLISTE_DB_PASSWORD}
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volumes:
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# - ./postgres-logs:/var/log/postgresql
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- ml-data:/var/lib/postgresql/data
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depends_on:
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- secureepilinker
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mainzelliste:
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image: medicalinformatics/mainzelliste:secureepilinker-alpha
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container_name: bridgehead-onkofdz-mainzelliste
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environment:
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ML_API_KEY: ${LOCAL_SEL_API_KEY}
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ML_DB_HOST: postgres
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ML_DB_PORT: 5432
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ML_DB_USER: mainzelliste-sel
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ML_DB_NAME: mainzelliste-sel
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ML_DB_PASS: ${MAINZELLISTE_DB_PASSWORD}
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ML_LOCAL_ID: ${SITE_ID}
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ML_LOCAL_SEL_URL: http://secureepilinker:8161
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ML_LOCAL_CALLBACK_LINK_URL: http://mainzelliste:8080/Communicator/linkCallback
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ML_LOCAL_CALLBACK_MATCH_URL: http://mainzelliste:8080/Communicator/matchCallback/${REMOTE_SEL_SITE}
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ML_LOCAL_DATA_SERVICE_URL: http://mainzelliste:8080/Communicator/getAllRecords
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ML_LOCAL_AUTHENTICATION_TYPE: apiKey
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ML_LOCAL_API_KEY: ${LOCAL_SEL_API_KEY}
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ML_SERVER_0_REMOTEID: ${REMOTE_SEL_SITE}
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ML_SERVER_0_IDTYPE: link-${SITE_ID}-${REMOTE_SEL_SITE}
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ML_SERVER_0_REMOTE_SEL_URL: http://beamsel:8080
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ML_SERVER_0_APIKEY: ${REMOTE_SEL_API_KEY}
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### Linkage Service not used for matching
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ML_SERVER_0_LINKAGE_SERVICE_BASE_URL: ${LS_SEL_URL}
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ML_SERVER_0_LINKAGE_SERVICE_AUTH_TYPE: apiKey
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ML_SERVER_0_LINKAGE_SERVICE_SHARED_KEY: ${LS_SEL_SHARED_KEY}
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ML_LOG_MODE: stdout #stdout=stdout everything else =logging in mainzelliste.log
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ML_LOG_LEVEL: INFO
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no_proxy: "localhost,secureepilinker"
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volumes:
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# - ./logs:/usr/local/tomcat/logs/
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- /etc/bridgehead/onkofdz/config/mainzelliste.conf.docker:/run/secrets/mainzelliste.docker.conf
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- /etc/bridgehead/onkofdz/config/sel.conf.docker:/run/secrets/sel.docker.conf
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depends_on:
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- postgres
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- secureepilinker
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secureepilinker:
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image: docker.verbis.dkfz.de/onkofdz/secureepilinker:beamsel
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container_name: bridgehead-onkofdz-secureepilinker
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environment:
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no_proxy: "mainzelliste,beamsel"
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volumes:
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- "/etc/bridgehead/onkofdz/config/epilinker.serverconf.json:/data/serverconf.json"
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command: '-vvvv'
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beamsel:
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image: docker.verbis.dkfz.de/onkofdz/beam-sel
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container_name: bridgehead-onkofdz-beamsel
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environment:
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BEAM_URL: "http://beam-proxy:8081"
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BEAM_SECRET: ${BEAMSEL_SECRET}
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BEAM_ID: beamsel.${PROXY_ID}
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SEL_ADDR: "secureepilinker:8161"
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depends_on:
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- secureepilinker
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volumes:
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ml-data:
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secrets:
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proxy.pem:
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file: /etc/bridgehead/pki/${SITE_ID}.priv.pem
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15
minimal/modules/onkofdz-setup.sh
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15
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@ -0,0 +1,15 @@
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#!/bin/bash
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if [ -n "${ENABLE_ONKOFDZ}" ]; then
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BROKER_ID=test.broker.onkofdz.samply.de
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BROKER_URL=https://${BROKER_ID}
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PROXY_ID=${SITE_ID}.${BROKER_ID}
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BEAMSEL_SECRET="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
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SUPPORT_EMAIL=tobias.kussel@dkfz-heidelberg.de
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PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
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BROKER_URL_FOR_PREREQ=$BROKER_URL
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log INFO "Loading OnkoFDZ module"
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OVERRIDE+=" -f ./$PROJECT/modules/onkofdz-compose.yml"
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fi
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