test: use batch import branch of oBDS2FHIR-REST

Merge pull request #289 from samply/develop
Merge develop into main
2025-06-16 17:20:15 +02:00 · 2025-05-02 14:41:09 +02:00 · 2025-04-15 10:17:11 +02:00 · 2025-04-14 10:45:15 +02:00 · 2025-04-11 08:37:31 +02:00 · 2025-04-09 13:19:52 +02:00
50 changed files with 820 additions and 192 deletions
--- a/.github/CODEOWNERS
+++ b/.github/CODEOWNERS
@ -0,0 +1 @@
+*  @samply/bridgehead-developers
--- a/.github/scripts/rename_inactive_branches.py
+++ b/.github/scripts/rename_inactive_branches.py
@ -0,0 +1,39 @@
+import os
+import requests
+from datetime import datetime, timedelta
+
+# Configuration
+GITHUB_TOKEN = os.getenv('GITHUB_TOKEN')
+REPO = 'samply/bridgehead'
+HEADERS = {'Authorization': f'token {GITHUB_TOKEN}', 'Accept': 'application/vnd.github.v3+json'}
+API_URL = f'https://api.github.com/repos/{REPO}/branches'
+INACTIVE_DAYS = 365
+CUTOFF_DATE = datetime.now() - timedelta(days=INACTIVE_DAYS)
+
+# Fetch all branches
+def get_branches():
+    response = requests.get(API_URL, headers=HEADERS)
+    response.raise_for_status()
+    return response.json() if response.status_code == 200 else []
+
+# Rename inactive branches
+def rename_branch(old_name, new_name):
+    rename_url = f'https://api.github.com/repos/{REPO}/branches/{old_name}/rename'
+    response = requests.post(rename_url, json={'new_name': new_name}, headers=HEADERS)
+    response.raise_for_status()
+    print(f"Renamed branch {old_name} to {new_name}" if response.status_code == 201 else f"Failed to rename {old_name}: {response.status_code}")
+
+# Check if the branch is inactive
+def is_inactive(commit_url):
+    last_commit_date = requests.get(commit_url, headers=HEADERS).json()['commit']['committer']['date']
+    return datetime.strptime(last_commit_date, '%Y-%m-%dT%H:%M:%SZ') < CUTOFF_DATE
+
+# Rename inactive branches
+def main():
+    for branch in get_branches():
+        if is_inactive(branch['commit']['url']):
+            #rename_branch(branch['name'], f"archived/{branch['name']}")
+            print(f"[LOG] Branch '{branch['name']}' is inactive and would be renamed to 'archived/{branch['name']}'")
+
+if __name__ == "__main__":
+    main()
--- a/.github/workflows/rename-inactive-branches.yml
+++ b/.github/workflows/rename-inactive-branches.yml
@ -0,0 +1,27 @@
+name: Cleanup - Rename Inactive Branches
+
+on:
+  schedule:
+    - cron: '0 0 * * 0'  # Runs every Sunday at midnight
+
+jobs:
+  archive-stale-branches:
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout Repository
+        uses: actions/checkout@v2
+
+      - name: Set up Python
+        uses: actions/setup-python@v2
+        with:
+          python-version: '3.x'
+
+      - name: Install Libraries
+        run: pip install requests
+
+      - name: Run Script to Rename Inactive Branches
+        run: |
+          python .github/scripts/rename_inactive_branches.py
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
--- a/README.md
+++ b/README.md
@ -76,7 +76,7 @@ The following URLs need to be accessible (prefix with `https://`):
  * git.verbis.dkfz.de
 * To fetch docker images
  * docker.verbis.dkfz.de
-  * Official Docker, Inc. URLs (subject to change, see [official list](https://docs.docker.com/desktop/all))
+  * Official Docker, Inc. URLs (subject to change, see [official list](https://docs.docker.com/desktop/setup/allow-list/))
    * hub.docker.com
    * registry-1.docker.io
    * production.cloudflare.docker.com
@ -154,7 +154,7 @@ Pay special attention to:
 Clone the bridgehead repository:
 ```shell
 sudo mkdir -p /srv/docker/
-sudo git clone https://github.com/samply/bridgehead.git /srv/docker/bridgehead
+sudo git clone -b main https://github.com/samply/bridgehead.git /srv/docker/bridgehead
 ```

 Then, run the installation script:
@ -254,6 +254,8 @@ sh bridgehead uninstall

 ## Site-specific configuration

+[How to Change Config Access Token](docs/update-access-token.md)
+
 ### HTTPS Access

 Even within your internal network, the Bridgehead enforces HTTPS for all services. During the installation, a self-signed, long-lived certificate was created for you. To increase security, you can simply replace the files under `/etc/bridgehead/traefik-tls` with ones from established certification authorities such as [Let's Encrypt](https://letsencrypt.org) or [DFN-AAI](https://www.aai.dfn.de).
--- a/bbmri/docker-compose.yml
+++ b/bbmri/docker-compose.yml
@ -4,13 +4,14 @@ version: "3.7"

 services:
  blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
    container_name: bridgehead-bbmri-blaze
    environment:
      BASE_URL: "http://bridgehead-bbmri-blaze:8080"
      JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
      DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
-      DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
+      DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
+      CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
      ENFORCE_REFERENTIAL_INTEGRITY: "false"
    volumes:
      - "blaze-data:/app/data"
--- a/bbmri/modules/eric-compose.yml
+++ b/bbmri/modules/eric-compose.yml
@ -2,7 +2,7 @@ version: "3.7"

 services:
  focus-eric:
-    image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}-bbmri
    container_name: bridgehead-focus-eric
    environment:
      API_KEY: ${ERIC_FOCUS_BEAM_SECRET_SHORT}
--- a/bbmri/modules/gbn-compose.yml
+++ b/bbmri/modules/gbn-compose.yml
@ -2,7 +2,7 @@ version: "3.7"

 services:
  focus-gbn:
-    image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}-bbmri
    container_name: bridgehead-focus-gbn
    environment:
      API_KEY: ${GBN_FOCUS_BEAM_SECRET_SHORT}
--- a/49
+++ b/49
@ -53,17 +53,44 @@ case "$PROJECT" in
 		;;
 esac

+# Loads config variables and runs the projects setup script
 loadVars() {
-	# Load variables from /etc/bridgehead and /srv/docker/bridgehead
 	set -a
+	# Source the project specific config file
 	source /etc/bridgehead/$PROJECT.conf || fail_and_report 1 "/etc/bridgehead/$PROJECT.conf not found"
+	# Source the project specific local config file if present
+	# This file is ignored by git as oposed to the regular config file as it contains private site information like etl auth data
 	if [ -e /etc/bridgehead/$PROJECT.local.conf ]; then
 		log INFO "Applying /etc/bridgehead/$PROJECT.local.conf"
 		source /etc/bridgehead/$PROJECT.local.conf || fail_and_report 1 "Found /etc/bridgehead/$PROJECT.local.conf but failed to import"
 	fi
+	# Set execution environment on main default to prod else test
+	if [[ -z "${ENVIRONMENT+x}" ]]; then
+		if [ "$(git rev-parse --abbrev-ref HEAD)" == "main" ]; then
+			ENVIRONMENT="production"
+		else
+			ENVIRONMENT="test"
+		fi
+	fi
+	# Source the versions of the images components 
+	case "$ENVIRONMENT" in
+		"production")
+			source ./versions/prod
+			;;
+		"test")
+			source ./versions/test
+			;;
+		*)
+			report_error 7 "Environment \"$ENVIRONMENT\" is unknown. Assuming production. FIX THIS!"
+			source ./versions/prod
+			;;
+	esac
 	fetchVarsFromVaultByFile /etc/bridgehead/$PROJECT.conf || fail_and_report 1 "Unable to fetchVarsFromVaultByFile"
 	setHostname
 	optimizeBlazeMemoryUsage
+	# Run project specific setup if it exists
+	# This will ususally modiy the `OVERRIDE` to include all the compose files that the project depends on
+	# This is also where projects specify which modules to load
 	[ -e ./$PROJECT/vars ] && source ./$PROJECT/vars
 	set +a

@ -79,26 +106,6 @@ loadVars() {
 	fi
 	detectCompose
 	setupProxy
-
-	# Set some project-independent default values
-	: ${ENVIRONMENT:=production}
-	export ENVIRONMENT
-
-	case "$ENVIRONMENT" in
-		"production")
-			export FOCUS_TAG=main
-			export BEAM_TAG=main
-			;;
-		"test")
-			export FOCUS_TAG=develop
-			export BEAM_TAG=develop
-			;;
-		*)
-			report_error 7 "Environment \"$ENVIRONMENT\" is unknown. Assuming production. FIX THIS!"
-			export FOCUS_TAG=main
-			export BEAM_TAG=main
-			;;
-	esac
 }

 case "$ACTION" in
--- a/cce/docker-compose.yml
+++ b/cce/docker-compose.yml
@ -2,13 +2,14 @@ version: "3.7"

 services:
  blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
    container_name: bridgehead-cce-blaze
    environment:
      BASE_URL: "http://bridgehead-cce-blaze:8080"
      JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
      DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
-      DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
+      DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
+      CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
      ENFORCE_REFERENTIAL_INTEGRITY: "false"
    volumes:
      - "blaze-data:/app/data"
@ -31,6 +32,10 @@ services:
      BEAM_PROXY_URL: http://beam-proxy:8081
      RETRY_COUNT: ${FOCUS_RETRY_COUNT}
      EPSILON: 0.28
+      QUERIES_TO_CACHE: '/queries_to_cache.conf'
+      ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
+    volumes:
+      - /srv/docker/bridgehead/cce/queries_to_cache.conf:/queries_to_cache.conf:ro
    depends_on:
      - "beam-proxy"
      - "blaze"
--- a/cce/queries_to_cache.conf
+++ b/cce/queries_to_cache.conf
@ -0,0 +1,2 @@
+bGlicmFyeSBSZXRyaWV2ZQp1c2luZyBGSElSIHZlcnNpb24gJzQuMC4wJwppbmNsdWRlIEZISVJIZWxwZXJzIHZlcnNpb24gJzQuMC4wJwpjb2Rlc3lzdGVtIFNhbXBsZU1hdGVyaWFsVHlwZTogJ2h0dHBzOi8vZmhpci5iYm1yaS5kZS9Db2RlU3lzdGVtL1NhbXBsZU1hdGVyaWFsVHlwZScKCmNvZGVzeXN0ZW0gbG9pbmM6ICdodHRwOi8vbG9pbmMub3JnJwoKY29udGV4dCBQYXRpZW50CgpES1RLX1NUUkFUX0dFTkRFUl9TVFJBVElGSUVSCgpES1RLX1NUUkFUX0FHRV9TVFJBVElGSUVSCgpES1RLX1NUUkFUX0RFQ0VBU0VEX1NUUkFUSUZJRVIKCkRLVEtfU1RSQVRfRElBR05PU0lTX1NUUkFUSUZJRVIKCkRLVEtfU1RSQVRfU1BFQ0lNRU5fU1RSQVRJRklFUgoKREtUS19TVFJBVF9QUk9DRURVUkVfU1RSQVRJRklFUgoKREtUS19TVFJBVF9NRURJQ0FUSU9OX1NUUkFUSUZJRVIKREtUS19TVFJBVF9ERUZfSU5fSU5JVElBTF9QT1BVTEFUSU9OCnRydWU=
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
--- a/ccp/docker-compose.yml
+++ b/ccp/docker-compose.yml
@ -2,13 +2,14 @@ version: "3.7"

 services:
  blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
    container_name: bridgehead-ccp-blaze
    environment:
      BASE_URL: "http://bridgehead-ccp-blaze:8080"
      JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
      DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
-      DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
+      DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
+      CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
      ENFORCE_REFERENTIAL_INTEGRITY: "false"
    volumes:
      - "blaze-data:/app/data"
@ -21,7 +22,7 @@ services:
      - "traefik.http.routers.blaze_ccp.tls=true"

  focus:
-    image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}
+    image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}-dktk
    container_name: bridgehead-focus
    environment:
      API_KEY: ${FOCUS_BEAM_SECRET_SHORT}
@ -32,8 +33,9 @@ services:
      RETRY_COUNT: ${FOCUS_RETRY_COUNT}
      EPSILON: 0.28
      QUERIES_TO_CACHE: '/queries_to_cache.conf'
+      ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
    volumes:
-      - /srv/docker/bridgehead/ccp/queries_to_cache.conf:/queries_to_cache.conf
+      - /srv/docker/bridgehead/ccp/queries_to_cache.conf:/queries_to_cache.conf:ro
    depends_on:
      - "beam-proxy"
      - "blaze"
@ -57,7 +59,6 @@ services:
      - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
      - /srv/docker/bridgehead/ccp/root.crt.pem:/conf/root.crt.pem:ro

-
 volumes:
  blaze-data:

--- a/ccp/modules/blaze-secondary-compose.yml
+++ b/ccp/modules/blaze-secondary-compose.yml
@ -2,7 +2,7 @@ version: "3.7"

 services:
  blaze-secondary:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
    container_name: bridgehead-ccp-blaze-secondary
    environment:
      BASE_URL: "http://bridgehead-ccp-blaze-secondary:8080"
--- a/ccp/modules/datashield-compose.yml
+++ b/ccp/modules/datashield-compose.yml
@ -151,7 +151,7 @@ services:
      --pass-access-token=false
    labels:
      - "traefik.enable=true"
-      - "traefik.http.routers.oauth2_proxy.rule=Host(`${HOST}`) && PathPrefix(`/oauth2`)"
+      - "traefik.http.routers.oauth2_proxy.rule=PathPrefix(`/oauth2`)"
      - "traefik.http.services.oauth2_proxy.loadbalancer.server.port=4180"
      - "traefik.http.routers.oauth2_proxy.tls=true"
    environment:
--- a/ccp/modules/dnpm-compose.yml
+++ b/ccp/modules/dnpm-compose.yml
@ -13,7 +13,7 @@ services:
      PROXY_APIKEY: ${DNPM_BEAM_SECRET_SHORT}
      APP_ID: dnpm-connect.${PROXY_ID}
      DISCOVERY_URL: "./conf/central_targets.json"
-      LOCAL_TARGETS_FILE: "./conf/connect_targets.json"
+      LOCAL_TARGETS_FILE: "/conf/connect_targets.json"
      HTTP_PROXY: "http://forward_proxy:3128"
      HTTPS_PROXY: "http://forward_proxy:3128"
      NO_PROXY: beam-proxy,dnpm-backend,host.docker.internal${DNPM_ADDITIONAL_NO_PROXY}
@ -25,7 +25,7 @@ services:
    volumes:
      - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
      - /etc/bridgehead/dnpm/local_targets.json:/conf/connect_targets.json:ro
-      - /etc/bridgehead/dnpm/central_targets.json:/conf/central_targets.json:ro
+      - /srv/docker/bridgehead/minimal/modules/dnpm-central-targets.json:/conf/central_targets.json:ro
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.dnpm-connect.rule=PathPrefix(`/dnpm-connect`)"
--- a/ccp/modules/dnpm-node-compose.yml
+++ b/ccp/modules/dnpm-node-compose.yml
@ -1,34 +1,99 @@
 version: "3.7"

 services:
-  dnpm-backend:
-    image: ghcr.io/kohlbacherlab/bwhc-backend:1.0-snapshot-broker-connector
-    container_name: bridgehead-dnpm-backend
+  dnpm-mysql:
+    image: mysql:9
+    healthcheck:
+      test: [ "CMD", "mysqladmin" ,"ping", "-h", "localhost" ]
+      interval: 3s
+      timeout: 5s
+      retries: 5
    environment:
-      - ZPM_SITE=${ZPM_SITE}
-      - N_RANDOM_FILES=${DNPM_SYNTH_NUM}
+      MYSQL_ROOT_HOST: "%"
+      MYSQL_ROOT_PASSWORD: ${DNPM_MYSQL_ROOT_PASSWORD}
    volumes:
-      - /etc/bridgehead/dnpm:/bwhc_config:ro
-      - ${DNPM_DATA_DIR}:/bwhc_data
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.bwhc-backend.rule=PathPrefix(`/bwhc`)"
-      - "traefik.http.services.bwhc-backend.loadbalancer.server.port=9000"
-      - "traefik.http.routers.bwhc-backend.tls=true"
+      - /var/cache/bridgehead/dnpm/mysql:/var/lib/mysql

-  dnpm-frontend:
-    image: ghcr.io/kohlbacherlab/bwhc-frontend:2209
-    container_name: bridgehead-dnpm-frontend
-    links:
-      - dnpm-backend
+  dnpm-authup:
+    image: authup/authup:latest
+    container_name: bridgehead-dnpm-authup
+    volumes:
+      - /var/cache/bridgehead/dnpm/authup:/usr/src/app/writable
+    depends_on:
+      dnpm-mysql:
+        condition: service_healthy
+    command: server/core start
    environment:
-      - NUXT_HOST=0.0.0.0
-      - NUXT_PORT=8080
-      - BACKEND_PROTOCOL=https
-      - BACKEND_HOSTNAME=$HOST
-      - BACKEND_PORT=443
+      - PUBLIC_URL=https://${HOST}/auth/
+      - AUTHORIZE_REDIRECT_URL=https://${HOST}
+      - ROBOT_ADMIN_ENABLED=true
+      - ROBOT_ADMIN_SECRET=${DNPM_AUTHUP_SECRET}
+      - ROBOT_ADMIN_SECRET_RESET=true
+      - DB_TYPE=mysql
+      - DB_HOST=dnpm-mysql
+      - DB_USERNAME=root
+      - DB_PASSWORD=${DNPM_MYSQL_ROOT_PASSWORD}
+      - DB_DATABASE=auth
    labels:
      - "traefik.enable=true"
-      - "traefik.http.routers.bwhc-frontend.rule=PathPrefix(`/`)"
-      - "traefik.http.services.bwhc-frontend.loadbalancer.server.port=8080"
-      - "traefik.http.routers.bwhc-frontend.tls=true"
+      - "traefik.http.middlewares.authup-strip.stripprefix.prefixes=/auth"
+      - "traefik.http.routers.dnpm-auth.middlewares=authup-strip"
+      - "traefik.http.routers.dnpm-auth.rule=PathPrefix(`/auth`)"
+      - "traefik.http.services.dnpm-auth.loadbalancer.server.port=3000"
+      - "traefik.http.routers.dnpm-auth.tls=true"
+
+  dnpm-portal:
+    image: ghcr.io/dnpm-dip/portal:latest
+    container_name: bridgehead-dnpm-portal
+    environment:
+      - NUXT_API_URL=http://dnpm-backend:9000/
+      - NUXT_PUBLIC_API_URL=https://${HOST}/api/
+      - NUXT_AUTHUP_URL=http://dnpm-authup:3000/
+      - NUXT_PUBLIC_AUTHUP_URL=https://${HOST}/auth/
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dnpm-frontend.rule=PathPrefix(`/`)"
+      - "traefik.http.services.dnpm-frontend.loadbalancer.server.port=3000"
+      - "traefik.http.routers.dnpm-frontend.tls=true"
+
+  dnpm-backend:
+    container_name: bridgehead-dnpm-backend
+    image: ghcr.io/dnpm-dip/backend:latest
+    environment:
+      - LOCAL_SITE=${ZPM_SITE}:${SITE_NAME}   # Format: {Site-ID}:{Site-name}, e.g. UKT:Tübingen
+      - RD_RANDOM_DATA=${DNPM_SYNTH_NUM:--1}
+      - MTB_RANDOM_DATA=${DNPM_SYNTH_NUM:--1}
+      - HATEOAS_HOST=https://${HOST}
+      - CONNECTOR_TYPE=broker
+      - AUTHUP_URL=robot://system:${DNPM_AUTHUP_SECRET}@http://dnpm-authup:3000
+    volumes:
+      - /etc/bridgehead/dnpm/config:/dnpm_config
+      - /var/cache/bridgehead/dnpm/backend-data:/dnpm_data
+    depends_on:
+      dnpm-authup:
+        condition: service_healthy
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.services.dnpm-backend.loadbalancer.server.port=9000"
+      # expose everything
+      - "traefik.http.routers.dnpm-backend.rule=PathPrefix(`/api`)"
+      - "traefik.http.routers.dnpm-backend.tls=true"
+      - "traefik.http.routers.dnpm-backend.service=dnpm-backend"
+      # except ETL
+      - "traefik.http.routers.dnpm-backend-etl.rule=PathRegexp(`^/api(/.*)?etl(/.*)?$`)"
+      - "traefik.http.routers.dnpm-backend-etl.tls=true"
+      - "traefik.http.routers.dnpm-backend-etl.service=dnpm-backend"
+      # this needs an ETL processor with support for basic auth
+      - "traefik.http.routers.dnpm-backend-etl.middlewares=auth"
+      # except peer-to-peer
+      - "traefik.http.routers.dnpm-backend-peer.rule=PathRegexp(`^/api(/.*)?/peer2peer(/.*)?$`)"
+      - "traefik.http.routers.dnpm-backend-peer.tls=true"
+      - "traefik.http.routers.dnpm-backend-peer.service=dnpm-backend"
+      - "traefik.http.routers.dnpm-backend-peer.middlewares=dnpm-backend-peer"
+      # this effectively denies all requests
+      # this is okay, because requests from peers don't go through Traefik
+      - "traefik.http.middlewares.dnpm-backend-peer.ipWhiteList.sourceRange=0.0.0.0/32"
+
+  landing:
+    labels:
+      - "traefik.http.routers.landing.rule=PathPrefix(`/landing`)"
--- a/ccp/modules/dnpm-node-setup.sh
+++ b/ccp/modules/dnpm-node-setup.sh
@ -1,28 +1,16 @@
 #!/bin/bash

 if [ -n "${ENABLE_DNPM_NODE}" ]; then
-	log INFO "DNPM setup detected (BwHC Node) -- will start BwHC node."
+	log INFO "DNPM setup detected -- will start DNPM:DIP node."
 	OVERRIDE+=" -f ./$PROJECT/modules/dnpm-node-compose.yml"

 	# Set variables required for BwHC Node. ZPM_SITE is assumed to be set in /etc/bridgehead/<project>.conf
-	DNPM_APPLICATION_SECRET="$(echo \"This is a salt string to generate one consistent password for DNPM. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
 	if [ -z "${ZPM_SITE+x}" ]; then
 		log ERROR "Mandatory variable ZPM_SITE not defined!"
 		exit 1
 	fi
-	if [ -z "${DNPM_DATA_DIR+x}" ]; then
-		log ERROR "Mandatory variable DNPM_DATA_DIR not defined!"
-		exit 1
-	fi
-	DNPM_SYNTH_NUM=${DNPM_SYNTH_NUM:-0}
-	if grep -q 'traefik.http.routers.landing.rule=PathPrefix(`/landing`)' /srv/docker/bridgehead/minimal/docker-compose.override.yml 2>/dev/null; then
-		echo "Override of landing page url already in place"
-	else
-		echo "Adding override of landing page url"
-		if [ -f /srv/docker/bridgehead/minimal/docker-compose.override.yml ]; then
-			echo -e '  landing:\n    labels:\n      - "traefik.http.routers.landing.rule=PathPrefix(`/landing`)"' >> /srv/docker/bridgehead/minimal/docker-compose.override.yml
-		else
-			echo -e 'version: "3.7"\nservices:\n  landing:\n    labels:\n      - "traefik.http.routers.landing.rule=PathPrefix(`/landing`)"' >> /srv/docker/bridgehead/minimal/docker-compose.override.yml
-		fi
-	fi
+    mkdir -p /var/cache/bridgehead/dnpm/ || fail_and_report 1 "Failed to create '/var/cache/bridgehead/dnpm/'. Please run sudo './bridgehead install $PROJECT' again to fix the permissions."
+    DNPM_SYNTH_NUM=${DNPM_SYNTH_NUM:--1}
+    DNPM_MYSQL_ROOT_PASSWORD="$(generate_simple_password 'dnpm mysql')"
+    DNPM_AUTHUP_SECRET="$(generate_simple_password 'dnpm authup')"
 fi
--- a/ccp/modules/exporter-compose.yml
+++ b/ccp/modules/exporter-compose.yml
@ -65,3 +65,8 @@ services:
      - "traefik.http.routers.reporter_ccp.tls=true"
      - "traefik.http.middlewares.reporter_ccp_strip.stripprefix.prefixes=/ccp-reporter"
      - "traefik.http.routers.reporter_ccp.middlewares=reporter_ccp_strip"
+
+  focus:
+    environment:
+      EXPORTER_URL: "http://exporter:8092"
+      EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
--- a/ccp/modules/fhir2sql-compose.yml
+++ b/ccp/modules/fhir2sql-compose.yml
@ -23,3 +23,7 @@ services:
      POSTGRES_DB: "dashboard"
    volumes:
      - "/var/cache/bridgehead/ccp/dashboard-db:/var/lib/postgresql/data"
+
+  focus:
+    environment:
+      POSTGRES_CONNECTION_STRING: "postgresql://dashboard:${DASHBOARD_DB_PASSWORD}@dashboard-db/dashboard"
--- a/ccp/modules/fhir2sql-setup.sh
+++ b/ccp/modules/fhir2sql-setup.sh
@ -4,4 +4,5 @@ if [ "$ENABLE_FHIR2SQL" == true ]; then
  log INFO "Dashboard setup detected -- will start Dashboard backend and FHIR2SQL service."
  OVERRIDE+=" -f ./$PROJECT/modules/fhir2sql-compose.yml"
  DASHBOARD_DB_PASSWORD="$(generate_simple_password 'fhir2sql')"
+  FOCUS_ENDPOINT_TYPE="blaze-and-sql"
 fi
--- a/ccp/modules/id-management-compose.yml
+++ b/ccp/modules/id-management-compose.yml
@ -19,10 +19,18 @@ services:
      - traefik-forward-auth
    labels:
      - "traefik.enable=true"
+      # Router with Authentication
      - "traefik.http.routers.id-manager.rule=PathPrefix(`/id-manager`)"
-      - "traefik.http.services.id-manager.loadbalancer.server.port=8080"
      - "traefik.http.routers.id-manager.tls=true"
      - "traefik.http.routers.id-manager.middlewares=traefik-forward-auth-idm"
+      - "traefik.http.routers.id-manager.service=id-manager-service"
+      # Router without Authentication
+      - "traefik.http.routers.id-manager-compatibility.rule=PathPrefix(`/id-manager/paths/translator/getIds`)"
+      - "traefik.http.routers.id-manager-compatibility.tls=true"
+      - "traefik.http.routers.id-manager-compatibility.service=id-manager-service"
+      # Definition of Service
+      - "traefik.http.services.id-manager-service.loadbalancer.server.port=8080"
+      - "traefik.http.services.id-manager-service.loadbalancer.server.scheme=http"

  patientlist:
    image: docker.verbis.dkfz.de/bridgehead/mainzelliste
@ -57,7 +65,7 @@ services:
      - "/tmp/bridgehead/patientlist/:/docker-entrypoint-initdb.d/"

  traefik-forward-auth:
-    image: docker.verbis.dkfz.de/cache/oauth2-proxy/oauth2-proxy:v7.6.0
+    image: docker.verbis.dkfz.de/cache/oauth2-proxy/oauth2-proxy:latest
    environment:
      - http_proxy=http://forward_proxy:3128
      - https_proxy=http://forward_proxy:3128
@ -67,6 +75,7 @@ services:
      - OAUTH2_PROXY_CLIENT_ID=bridgehead-${SITE_ID}
      - OAUTH2_PROXY_CLIENT_SECRET=${IDMANAGER_AUTH_CLIENT_SECRET}
      - OAUTH2_PROXY_COOKIE_SECRET=${IDMANAGER_AUTH_COOKIE_SECRET}
+      - OAUTH2_PROXY_COOKIE_NAME=_BRIDGEHEAD_oauth2_idm
      - OAUTH2_PROXY_COOKIE_DOMAINS=.${HOST}
      - OAUTH2_PROXY_HTTP_ADDRESS=:4180
      - OAUTH2_PROXY_REVERSE_PROXY=true
@ -92,5 +101,12 @@ services:
      forward_proxy:
        condition: service_healthy

+  ccp-patient-project-identificator:
+    image: docker.verbis.dkfz.de/cache/samply/ccp-patient-project-identificator
+    container_name: bridgehead-ccp-patient-project-identificator
+    environment:
+      MAINZELLISTE_APIKEY: ${IDMANAGER_LOCAL_PATIENTLIST_APIKEY}
+      SITE_NAME: ${IDMANAGEMENT_FRIENDLY_ID}
+
 volumes:
  patientlist-db-data:
--- a/ccp/modules/nngm-compose.yml
+++ b/ccp/modules/nngm-compose.yml
@ -12,7 +12,6 @@ services:
      CTS_API_KEY: ${NNGM_CTS_APIKEY}
      CRYPT_KEY: ${NNGM_CRYPTKEY}
      #CTS_MAGICPL_SITE: ${SITE_ID}TODO
-    restart: always
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.connector.rule=PathPrefix(`/nngm-connector`)"
--- a/ccp/modules/obds2fhir-rest-compose.yml
+++ b/ccp/modules/obds2fhir-rest-compose.yml
@ -3,14 +3,13 @@ version: "3.7"
 services:
  obds2fhir-rest:
    container_name: bridgehead-obds2fhir-rest
-    image: docker.verbis.dkfz.de/ccp/obds2fhir-rest:main
+    image: docker.verbis.dkfz.de/ccp/obds2fhir-rest:fixSampleImport
    environment:
      IDTYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID
      MAINZELLISTE_APIKEY: ${IDMANAGER_LOCAL_PATIENTLIST_APIKEY}
      SALT: ${LOCAL_SALT}
      KEEP_INTERNAL_ID: ${KEEP_INTERNAL_ID:-false}
      MAINZELLISTE_URL: ${PATIENTLIST_URL:-http://patientlist:8080/patientlist}
-    restart: always
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.obds2fhir-rest.rule=PathPrefix(`/obds2fhir-rest`) || PathPrefix(`/adt2fhir-rest`)"
--- a/ccp/queries_to_cache.conf
+++ b/ccp/queries_to_cache.conf
@ -1,2 +1,2 @@
-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
-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
+bGlicmFyeSBSZXRyaWV2ZQp1c2luZyBGSElSIHZlcnNpb24gJzQuMC4wJwppbmNsdWRlIEZISVJIZWxwZXJzIHZlcnNpb24gJzQuMC4wJwoKY29kZXN5c3RlbSBsb2luYzogJ2h0dHA6Ly9sb2luYy5vcmcnCmNvZGVzeXN0ZW0gaWNkMTA6ICdodHRwOi8vZmhpci5kZS9Db2RlU3lzdGVtL2JmYXJtL2ljZC0xMC1nbScKY29kZXN5c3RlbSBtb3JwaDogJ3VybjpvaWQ6Mi4xNi44NDAuMS4xMTM4ODMuNi40My4xJwoKY29udGV4dCBQYXRpZW50CgoKREtUS19TVFJBVF9HRU5ERVJfU1RSQVRJRklFUgoKREtUS19TVFJBVF9QUklNQVJZX0RJQUdOT1NJU19OT19TT1JUX1NUUkFUSUZJRVIKREtUS19TVFJBVF9BR0VfQ0xBU1NfU1RSQVRJRklFUgoKREtUS19TVFJBVF9ERUNFQVNFRF9TVFJBVElGSUVSCgpES1RLX1NUUkFUX0RJQUdOT1NJU19TVFJBVElGSUVSCgpES1RLX1JFUExBQ0VfU1BFQ0lNRU5fU1RSQVRJRklFUmlmIEluSW5pdGlhbFBvcHVsYXRpb24gdGhlbiBbU3BlY2ltZW5dIGVsc2Uge30gYXMgTGlzdDxTcGVjaW1lbj4KREtUS19TVFJBVF9QUk9DRURVUkVfU1RSQVRJRklFUgoKREtUS19TVFJBVF9NRURJQ0FUSU9OX1NUUkFUSUZJRVIKCiAgREtUS19SRVBMQUNFX0hJU1RPTE9HWV9TVFJBVElGSUVSCiBpZiBoaXN0by5jb2RlLmNvZGluZy53aGVyZShjb2RlID0gJzU5ODQ3LTQnKS5jb2RlLmZpcnN0KCkgaXMgbnVsbCB0aGVuIDAgZWxzZSAxCkRLVEtfU1RSQVRfREVGX0lOX0lOSVRJQUxfUE9QVUxBVElPTihleGlzdHMgW0NvbmRpdGlvbjogQ29kZSAnQzYxJyBmcm9tIGljZDEwXSkgYW5kIAooKGV4aXN0cyBmcm9tIFtPYnNlcnZhdGlvbjogQ29kZSAnNTk4NDctNCcgZnJvbSBsb2luY10gTwp3aGVyZSBPLnZhbHVlLmNvZGluZy5jb2RlIGNvbnRhaW5zICc4MTQwLzMnKSBvciAKKGV4aXN0cyBmcm9tIFtPYnNlcnZhdGlvbjogQ29kZSAnNTk4NDctNCcgZnJvbSBsb2luY10gTwp3aGVyZSBPLnZhbHVlLmNvZGluZy5jb2RlIGNvbnRhaW5zICc4MTQ3LzMnKSBvciAKKGV4aXN0cyBmcm9tIFtPYnNlcnZhdGlvbjogQ29kZSAnNTk4NDctNCcgZnJvbSBsb2luY10gTwp3aGVyZSBPLnZhbHVlLmNvZGluZy5jb2RlIGNvbnRhaW5zICc4NDgwLzMnKSBvciAKKGV4aXN0cyBmcm9tIFtPYnNlcnZhdGlvbjogQ29kZSAnNTk4NDctNCcgZnJvbSBsb2luY10gTwp3aGVyZSBPLnZhbHVlLmNvZGluZy5jb2RlIGNvbnRhaW5zICc4NTAwLzMnKSk=
--- a/ccp/vars
+++ b/ccp/vars
@ -30,3 +30,11 @@ idManagementSetup
 mtbaSetup
 obds2fhirRestSetup
 blazeSecondarySetup
+
+for module in modules/*.sh
+do
+    log DEBUG "sourcing $module"
+    source $module
+done
+
+transfairSetup
--- a/dhki/docker-compose.yml
+++ b/dhki/docker-compose.yml
@ -2,7 +2,7 @@ version: "3.7"

 services:
  blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
    container_name: bridgehead-dhki-blaze
    environment:
      BASE_URL: "http://bridgehead-dhki-blaze:8080"
@ -33,7 +33,7 @@ services:
      EPSILON: 0.28
      QUERIES_TO_CACHE: '/queries_to_cache.conf'
    volumes:
-      - /srv/docker/bridgehead/dhki/queries_to_cache.conf:/queries_to_cache.conf
+      - /srv/docker/bridgehead/dhki/queries_to_cache.conf:/queries_to_cache.conf:ro
    depends_on:
      - "beam-proxy"
      - "blaze"
--- a/dhki/vars
+++ b/dhki/vars
@ -18,3 +18,11 @@ done

 idManagementSetup
 obds2fhirRestSetup
+
+for module in modules/*.sh
+do
+    log DEBUG "sourcing $module"
+    source $module
+done
+
+transfairSetup
--- a/docs/update-access-token.md
+++ b/docs/update-access-token.md
@ -0,0 +1,42 @@
+## How to Change Config Access Token
+
+### 1. Generate a New Access Token
+
+1. Go to your Git configuration repository provider, it might be either [git.verbis.dkfz.de](https://git.verbis.dkfz.de) or [gitlab.bbmri-eric.eu](https://gitlab.bbmri-eric.eu).  
+2. Navigate to the configuration repository for your site.  
+3. Go to **Settings → Access Tokens** to check if your Access Token is valid or expired.  
+   - **If expired**, create a new Access Token.  
+4. Configure the new Access Token with the following settings:  
+   - **Expiration date**: One year from today, minus one day.  
+   - **Role**: Developer.  
+   - **Scope**: Only `read_repository`.  
+5. Save the newly generated Access Token in a secure location.  
+
+---
+
+### 2. Replace the Old Access Token
+
+1. Navigate to `/etc/bridgehead` in your system.  
+2. Run the following command to retrieve the current Git remote URL:  
+   ```bash
+   git remote get-url origin
+   ```
+   Example output:  
+   ```
+   https://name40dkfz-heidelberg.de:<old_access_token>@git.verbis.dkfz.de/bbmri-bridgehead-configs/test.git
+   ```
+3. Replace `<old_access_token>` with your new Access Token in the URL.  
+4. Set the updated URL using the following command:  
+   ```bash
+   git remote set-url origin https://name40dkfz-heidelberg.de:<new_access_token>@git.verbis.dkfz.de/bbmri-bridgehead-configs/test.git
+   
+   ```
+
+5. Start the Bridgehead update service by running:  
+   ```bash
+   systemctl start bridgehead-update@<project>
+   ```
+6. View the output to ensure the update process is successful:  
+   ```bash
+   journalctl -u bridgehead-update@<project> -f
+   ```
--- a/itcc/docker-compose.yml
+++ b/itcc/docker-compose.yml
@ -2,13 +2,14 @@ version: "3.7"

 services:
  blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
    container_name: bridgehead-itcc-blaze
    environment:
      BASE_URL: "http://bridgehead-itcc-blaze:8080"
      JAVA_TOOL_OPTIONS: "-Xmx${BLAZE_MEMORY_CAP:-4096}m"
      DB_RESOURCE_CACHE_SIZE: ${BLAZE_RESOURCE_CACHE_CAP:-2500000}
-      DB_BLOCK_CACHE_SIZE: $BLAZE_MEMORY_CAP
+      DB_BLOCK_CACHE_SIZE: ${BLAZE_MEMORY_CAP}
+      CQL_EXPR_CACHE_SIZE: ${BLAZE_CQL_CACHE_CAP:-32}
      ENFORCE_REFERENTIAL_INTEGRITY: "false"
    volumes:
      - "blaze-data:/app/data"
@ -31,6 +32,10 @@ services:
      BEAM_PROXY_URL: http://beam-proxy:8081
      RETRY_COUNT: ${FOCUS_RETRY_COUNT}
      EPSILON: 0.28
+      QUERIES_TO_CACHE: '/queries_to_cache.conf'
+      ENDPOINT_TYPE: ${FOCUS_ENDPOINT_TYPE:-blaze}
+    volumes:
+      - /srv/docker/bridgehead/itcc/queries_to_cache.conf:/queries_to_cache.conf:ro
    depends_on:
      - "beam-proxy"
      - "blaze"
--- a/itcc/queries_to_cache.conf
+++ b/itcc/queries_to_cache.conf
@ -0,0 +1,2 @@
+bGlicmFyeSBSZXRyaWV2ZQp1c2luZyBGSElSIHZlcnNpb24gJzQuMC4wJwppbmNsdWRlIEZISVJIZWxwZXJzIHZlcnNpb24gJzQuMC4wJwpjb2Rlc3lzdGVtIFNhbXBsZU1hdGVyaWFsVHlwZTogJ2h0dHBzOi8vZmhpci5iYm1yaS5kZS9Db2RlU3lzdGVtL1NhbXBsZU1hdGVyaWFsVHlwZScKCmNvZGVzeXN0ZW0gbG9pbmM6ICdodHRwOi8vbG9pbmMub3JnJwoKY29udGV4dCBQYXRpZW50CkRLVEtfU1RSQVRfR0VOREVSX1NUUkFUSUZJRVIKICBES1RLX1NUUkFUX0RJQUdOT1NJU19TVFJBVElGSUVSCiAgSVRDQ19TVFJBVF9BR0VfQ0xBU1NfU1RSQVRJRklFUgogIERLVEtfU1RSQVRfREVGX0lOX0lOSVRJQUxfUE9QVUxBVElPTgp0cnVl
+bGlicmFyeSBSZXRyaWV2ZQp1c2luZyBGSElSIHZlcnNpb24gJzQuMC4wJwppbmNsdWRlIEZISVJIZWxwZXJzIHZlcnNpb24gJzQuMC4wJwpjb2Rlc3lzdGVtIFNhbXBsZU1hdGVyaWFsVHlwZTogJ2h0dHBzOi8vZmhpci5iYm1yaS5kZS9Db2RlU3lzdGVtL1NhbXBsZU1hdGVyaWFsVHlwZScKCmNvZGVzeXN0ZW0gbG9pbmM6ICdodHRwOi8vbG9pbmMub3JnJwpjb2Rlc3lzdGVtIG1vbGVjdWxhck1hcmtlcjogJ2h0dHA6Ly93d3cuZ2VuZW5hbWVzLm9yZycKCmNvbnRleHQgUGF0aWVudApES1RLX1NUUkFUX0dFTkRFUl9TVFJBVElGSUVSCiAgREtUS19TVFJBVF9ESUFHTk9TSVNfU1RSQVRJRklFUgogIElUQ0NfU1RSQVRfQUdFX0NMQVNTX1NUUkFUSUZJRVIKICBES1RLX1NUUkFUX0RFRl9JTl9JTklUSUFMX1BPUFVMQVRJT04KKGV4aXN0cyBmcm9tIFtPYnNlcnZhdGlvbjogQ29kZSAnNjk1NDgtNicgZnJvbSBsb2luY10gTwp3aGVyZSBPLmNvbXBvbmVudC53aGVyZShjb2RlLmNvZGluZyBjb250YWlucyBDb2RlICc0ODAxOC02JyBmcm9tIGxvaW5jKS52YWx1ZS5jb2RpbmcgY29udGFpbnMgQ29kZSAnQlJBRicgZnJvbSBtb2xlY3VsYXJNYXJrZXIp
--- a/kr/docker-compose.yml
+++ b/kr/docker-compose.yml
@ -1,8 +1,12 @@
 version: "3.7"

 services:
+  landing:
+    deploy:
+      replicas: 0 #deactivate landing page
+
  blaze:
-    image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
    container_name: bridgehead-kr-blaze
    environment:
      BASE_URL: "http://bridgehead-kr-blaze:8080"
--- a/kr/modules/lens-compose.yml
+++ b/kr/modules/lens-compose.yml
@ -1,6 +1,8 @@
 version: "3.7"
 services:
  landing:
+    deploy:
+      replicas: 1 #reactivate if lens is in use
    container_name: lens_federated-search
    image: docker.verbis.dkfz.de/ccp/lens:${SITE_ID}
    labels:
--- a/kr/modules/obds2fhir-rest-compose.yml
+++ b/kr/modules/obds2fhir-rest-compose.yml
@ -10,7 +10,6 @@ services:
      SALT: ${LOCAL_SALT}
      KEEP_INTERNAL_ID: ${KEEP_INTERNAL_ID:-false}
      MAINZELLISTE_URL: ${PATIENTLIST_URL:-http://patientlist:8080/patientlist}
-    restart: always
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.obds2fhir-rest.rule=PathPrefix(`/obds2fhir-rest`) || PathPrefix(`/adt2fhir-rest`)"
--- a/lib/functions.sh
+++ b/lib/functions.sh
@ -116,7 +116,7 @@ assertVarsNotEmpty() {
 	MISSING_VARS=""

 	for VAR in $@; do
-	if [ -z "${!VAR}" ]; then
+		if [ -z "${!VAR}" ]; then
 			MISSING_VARS+="$VAR "
 		fi
 	done
@ -171,8 +171,10 @@ optimizeBlazeMemoryUsage() {
 		if [ $available_system_memory_chunks -eq 0 ]; then
 			log WARN "Only ${BLAZE_MEMORY_CAP} system memory available for Blaze. If your Blaze stores more than 128000 fhir ressources it will run significally slower."
 			export BLAZE_RESOURCE_CACHE_CAP=128000;
+			export BLAZE_CQL_CACHE_CAP=32;
 		else
 			export BLAZE_RESOURCE_CACHE_CAP=$((available_system_memory_chunks * 312500))
+			export BLAZE_CQL_CACHE_CAP=$((($system_memory_in_mb/4)/16));
 		fi
 	fi
 }
@ -311,15 +313,79 @@ function sync_secrets() {
        -e ALL_PROXY=$HTTPS_PROXY_FULL_URL \
        -e PROXY_ID=$PROXY_ID \
        -e BROKER_URL=$BROKER_URL \
-        -e OIDC_PROVIDER=secret-sync-central.oidc-client-enrollment.$BROKER_ID \
+        -e OIDC_PROVIDER=secret-sync-central.central-secret-sync.$BROKER_ID \
        -e SECRET_DEFINITIONS=$secret_sync_args \
        docker.verbis.dkfz.de/cache/samply/secret-sync-local:latest

    set -a # Export variables as environment variables
-    source /var/cache/bridgehead/secrets/*
+    source /var/cache/bridgehead/secrets/oidc
    set +a # Export variables in the regular way
 }

+function secret_sync_gitlab_token() {
+    # Map the origin of the git repository /etc/bridgehead to the prefix recognized by Secret Sync
+    local gitlab
+    case "$(git -C /etc/bridgehead remote get-url origin)" in
+        *git.verbis.dkfz.de*) gitlab=verbis;;
+        *gitlab.bbmri-eric.eu*) gitlab=bbmri;;
+        *)
+            log "WARN" "Not running Secret Sync because the git repository /etc/bridgehead has unknown origin"
+            return
+            ;;
+    esac
+
+    if [ "$PROJECT" == "bbmri" ]; then
+        # If the project is BBMRI, use the BBMRI-ERIC broker and not the GBN broker
+        proxy_id=$ERIC_PROXY_ID
+        broker_url=$ERIC_BROKER_URL
+        broker_id=$ERIC_BROKER_ID
+        root_crt_file="/srv/docker/bridgehead/bbmri/modules/${ERIC_ROOT_CERT}.root.crt.pem"
+    else
+        proxy_id=$PROXY_ID
+        broker_url=$BROKER_URL
+        broker_id=$BROKER_ID
+        root_crt_file="/srv/docker/bridgehead/$PROJECT/root.crt.pem"
+    fi
+
+    # Use Secret Sync to validate the GitLab token in /var/cache/bridgehead/secrets/gitlab_token.
+    # If it is missing or expired, Secret Sync will create a new token and write it to the file.
+    # The git credential helper reads the token from the file during git pull.
+    mkdir -p /var/cache/bridgehead/secrets
+    touch /var/cache/bridgehead/secrets/gitlab_token # the file has to exist to be mounted correctly in the Docker container
+    log "INFO" "Running Secret Sync for the GitLab token (gitlab=$gitlab)"
+    docker pull docker.verbis.dkfz.de/cache/samply/secret-sync-local:latest # make sure we have the latest image
+    docker run --rm \
+        -v /var/cache/bridgehead/secrets/gitlab_token:/usr/local/cache \
+        -v $PRIVATEKEYFILENAME:/run/secrets/privkey.pem:ro \
+        -v $root_crt_file:/run/secrets/root.crt.pem:ro \
+        -v /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro \
+        -e TLS_CA_CERTIFICATES_DIR=/conf/trusted-ca-certs \
+        -e NO_PROXY=localhost,127.0.0.1 \
+        -e ALL_PROXY=$HTTPS_PROXY_FULL_URL \
+        -e PROXY_ID=$proxy_id \
+        -e BROKER_URL=$broker_url \
+        -e GITLAB_PROJECT_ACCESS_TOKEN_PROVIDER=secret-sync-central.central-secret-sync.$broker_id \
+        -e SECRET_DEFINITIONS=GitLabProjectAccessToken:BRIDGEHEAD_CONFIG_REPO_TOKEN:$gitlab \
+        docker.verbis.dkfz.de/cache/samply/secret-sync-local:latest
+    if [ $? -eq 0 ]; then
+        log "INFO" "Secret Sync was successful"
+        # In the past we used to hardcode tokens into the repository URL. We have to remove those now for the git credential helper to become effective.
+        CLEAN_REPO="$(git -C /etc/bridgehead remote get-url origin | sed -E 's|https://[^@]+@|https://|')"
+        git -C /etc/bridgehead remote set-url origin "$CLEAN_REPO"
+        # Set the git credential helper
+        git -C /etc/bridgehead config credential.helper /srv/docker/bridgehead/lib/gitlab-token-helper.sh
+    else
+        log "WARN" "Secret Sync failed"
+        # Remove the git credential helper
+        git -C /etc/bridgehead config --unset credential.helper
+    fi
+
+    # In the past the git credential helper was also set for /srv/docker/bridgehead but never used.
+    # Let's remove it to avoid confusion. This line can be removed at some point the future when we
+    # believe that it was removed on all/most production servers.
+    git -C /srv/docker/bridgehead config --unset credential.helper
+}
+
 capitalize_first_letter() {
    input="$1"
    capitalized="$(tr '[:lower:]' '[:upper:]' <<< ${input:0:1})${input:1}"
--- a/lib/gitlab-token-helper.sh
+++ b/lib/gitlab-token-helper.sh
@ -0,0 +1,11 @@
+#!/bin/bash
+
+[ "$1" = "get" ] || exit
+
+source /var/cache/bridgehead/secrets/gitlab_token
+
+# Any non-empty username works, only the token matters
+cat << EOF
+username=bk
+password=$BRIDGEHEAD_CONFIG_REPO_TOKEN
+EOF
--- a/lib/gitpassword.sh
+++ b/lib/gitpassword.sh
@ -1,41 +0,0 @@
-#!/bin/bash
-
-if [ "$1" != "get" ]; then
-	echo "Usage: $0 get"
-	exit 1
-fi
-
-baseDir() {
-	# see https://stackoverflow.com/questions/59895
-	SOURCE=${BASH_SOURCE[0]}
-	while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
-		DIR=$( cd -P "$( dirname "$SOURCE" )" >/dev/null 2>&1 && pwd )
-		SOURCE=$(readlink "$SOURCE")
-		[[ $SOURCE != /* ]] && SOURCE=$DIR/$SOURCE # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
-        done
-        DIR=$( cd -P "$( dirname "$SOURCE" )/.." >/dev/null 2>&1 && pwd )
-        echo $DIR
-}
-
-BASE=$(baseDir)
-cd $BASE
-
-source lib/functions.sh
-
-assertVarsNotEmpty SITE_ID || fail_and_report 1 "gitpassword.sh failed: SITE_ID is empty."
-
-PARAMS="$(cat)"
-GITHOST=$(echo "$PARAMS" | grep "^host=" | sed 's/host=\(.*\)/\1/g')
-
-fetchVarsFromVault GIT_PASSWORD
-
-if [ -z "${GIT_PASSWORD}" ]; then
-	fail_and_report 1 "gitpassword.sh failed: Git password not found."
-fi
-
-cat <<EOF
-protocol=https
-host=$GITHOST
-username=bk-${SITE_ID}
-password=${GIT_PASSWORD}
-EOF
--- a/lib/install-bridgehead.sh
+++ b/lib/install-bridgehead.sh
@ -41,6 +41,14 @@ if [ ! -z "$NNGM_CTS_APIKEY" ] && [ -z "$NNGM_AUTH" ]; then
  add_basic_auth_user "nngm" $generated_passwd "NNGM_AUTH" $PROJECT
 fi

+if [ -z "$TRANSFAIR_AUTH" ]; then
+  if [[ -n "$TTP_URL" || -n "$EXCHANGE_ID_SYSTEM" ]]; then
+    log "INFO" "Now generating basic auth user for transfair API (see adduser in bridgehead for more information). "
+    generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"
+    add_basic_auth_user "transfair" $generated_passwd "TRANSFAIR_AUTH" $PROJECT
+  fi
+fi
+
 log "INFO" "Registering system units for bridgehead and bridgehead-update"
 cp -v \
    lib/systemd/bridgehead\@.service \
--- a/lib/update-bridgehead.sh
+++ b/lib/update-bridgehead.sh
@ -19,7 +19,7 @@ fi

 hc_send log "Checking for bridgehead updates ..."

-CONFFILE=/etc/bridgehead/$1.conf
+CONFFILE=/etc/bridgehead/$PROJECT.conf

 if [ ! -e $CONFFILE ]; then
  fail_and_report 1 "Configuration file $CONFFILE not found."
@ -33,7 +33,7 @@ export SITE_ID
 checkOwner /srv/docker/bridgehead bridgehead || fail_and_report 1 "Update failed: Wrong permissions in /srv/docker/bridgehead"
 checkOwner /etc/bridgehead bridgehead || fail_and_report 1 "Update failed: Wrong permissions in /etc/bridgehead"

-CREDHELPER="/srv/docker/bridgehead/lib/gitpassword.sh"
+secret_sync_gitlab_token

 CHANGES=""

@ -45,10 +45,6 @@ for DIR in /etc/bridgehead $(pwd); do
  if [ -n "$OUT" ]; then
    report_error log "The working directory $DIR is modified. Changed files: $OUT"
  fi
-  if [ "$(git -C $DIR config --get credential.helper)" != "$CREDHELPER" ]; then
-    log "INFO" "Configuring repo to use bridgehead git credential helper."
-    git -C $DIR config credential.helper "$CREDHELPER"
-  fi
  old_git_hash="$(git -C $DIR rev-parse --verify HEAD)"
  if [ -z "$HTTPS_PROXY_FULL_URL" ]; then
    log "INFO" "Git is using no proxy!"
@ -58,7 +54,8 @@ for DIR in /etc/bridgehead $(pwd); do
    OUT=$(retry 5 git -c http.proxy=$HTTPS_PROXY_FULL_URL -c https.proxy=$HTTPS_PROXY_FULL_URL -C $DIR fetch 2>&1 && retry 5 git -c http.proxy=$HTTPS_PROXY_FULL_URL -c https.proxy=$HTTPS_PROXY_FULL_URL -C $DIR pull 2>&1)
  fi
  if [ $? -ne 0 ]; then
-    report_error log "Unable to update git $DIR: $OUT"
+    OUT_SAN=$(echo $OUT | sed -E 's|://[^:]+:[^@]+@|://credentials@|g')
+    report_error log "Unable to update git $DIR: $OUT_SAN"
  fi

  new_git_hash="$(git -C $DIR rev-parse --verify HEAD)"
--- a/minimal/docker-compose.yml
+++ b/minimal/docker-compose.yml
@ -16,7 +16,7 @@ services:
      - --entrypoints.web.http.redirections.entrypoint.scheme=https
    labels:
      - "traefik.enable=true"
-      - "traefik.http.routers.dashboard.rule=PathPrefix(`/api`) || PathPrefix(`/dashboard/`)"
+      - "traefik.http.routers.dashboard.rule=PathPrefix(`/dashboard/`)"
      - "traefik.http.routers.dashboard.entrypoints=websecure"
      - "traefik.http.routers.dashboard.service=api@internal"
      - "traefik.http.routers.dashboard.tls=true"
--- a/minimal/modules/dnpm-central-targets.json
+++ b/minimal/modules/dnpm-central-targets.json
@ -0,0 +1,142 @@
+{
+    "sites": [
+        {
+            "id": "UKFR",
+            "name": "Freiburg",
+            "virtualhost": "ukfr.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKHD",
+            "name": "Heidelberg",
+            "virtualhost": "ukhd.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKT",
+            "name": "Tübingen",
+            "virtualhost": "ukt.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKU",
+            "name": "Ulm",
+            "virtualhost": "uku.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UM",
+            "name": "Mainz",
+            "virtualhost": "um.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKMR",
+            "name": "Marburg",
+            "virtualhost": "ukmr.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKE",
+            "name": "Hamburg",
+            "virtualhost": "uke.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKA",
+            "name": "Aachen",
+            "virtualhost": "uka.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "Charite",
+            "name": "Berlin",
+            "virtualhost": "charite.dnpm.de",
+            "beamconnect": "dnpm-connect.berlin-test.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "MRI",
+            "name": "Muenchen-tum",
+            "virtualhost": "mri.dnpm.de",
+            "beamconnect": "dnpm-connect.muenchen-tum.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "KUM",
+            "name": "Muenchen-lmu",
+            "virtualhost": "kum.dnpm.de",
+            "beamconnect": "dnpm-connect.muenchen-lmu.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "MHH",
+            "name": "Hannover",
+            "virtualhost": "mhh.dnpm.de",
+            "beamconnect": "dnpm-connect.hannover.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKDD",
+            "name": "dresden-dnpm",
+            "virtualhost": "ukdd.dnpm.de",
+            "beamconnect": "dnpm-connect.dresden-dnpm.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKB",
+            "name": "Bonn",
+            "virtualhost": "ukb.dnpm.de",
+            "beamconnect": "dnpm-connect.bonn-dnpm.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKD",
+            "name": "Duesseldorf",
+            "virtualhost": "ukd.dnpm.de",
+            "beamconnect": "dnpm-connect.duesseldorf-dnpm.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKK",
+            "name": "Koeln",
+            "virtualhost": "ukk.dnpm.de",
+            "beamconnect": "dnpm-connect.dnpm-bridge.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UME",
+            "name": "Essen",
+            "virtualhost": "ume.dnpm.de",
+            "beamconnect": "dnpm-connect.essen.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKM",
+            "name": "Muenster",
+            "virtualhost": "ukm.dnpm.de",
+            "beamconnect": "dnpm-connect.muenster-dnpm.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKF",
+            "name": "Frankfurt",
+            "virtualhost": "ukf.dnpm.de",
+            "beamconnect": "dnpm-connect.frankfurt.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UMG",
+            "name": "Goettingen",
+            "virtualhost": "umg.dnpm.de",
+            "beamconnect": "dnpm-connect.goettingen.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKW",
+            "name": "Würzburg",
+            "virtualhost": "ukw.dnpm.de",
+            "beamconnect": "dnpm-connect.wuerzburg-dnpm.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "UKSH",
+            "name": "Schleswig-Holstein",
+            "virtualhost": "uksh.dnpm.de",
+            "beamconnect": "dnpm-connect.uksh-dnpm.broker.ccp-it.dktk.dkfz.de"
+        },
+        {
+            "id": "TKT",
+            "name": "Test",
+            "virtualhost": "tkt.dnpm.de",
+            "beamconnect": "dnpm-connect.tobias-develop.broker.ccp-it.dktk.dkfz.de"
+        }
+    ]
+}
--- a/minimal/modules/dnpm-compose.yml
+++ b/minimal/modules/dnpm-compose.yml
@ -29,7 +29,7 @@ services:
      PROXY_APIKEY: ${DNPM_BEAM_SECRET_SHORT}
      APP_ID: dnpm-connect.${DNPM_PROXY_ID}
      DISCOVERY_URL: "./conf/central_targets.json"
-      LOCAL_TARGETS_FILE: "./conf/connect_targets.json"
+      LOCAL_TARGETS_FILE: "/conf/connect_targets.json"
      HTTP_PROXY: http://forward_proxy:3128
      HTTPS_PROXY: http://forward_proxy:3128
      NO_PROXY: dnpm-beam-proxy,dnpm-backend, host.docker.internal${DNPM_ADDITIONAL_NO_PROXY}
@ -41,7 +41,7 @@ services:
    volumes:
      - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
      - /etc/bridgehead/dnpm/local_targets.json:/conf/connect_targets.json:ro
-      - /etc/bridgehead/dnpm/central_targets.json:/conf/central_targets.json:ro
+      - /srv/docker/bridgehead/minimal/modules/dnpm-central-targets.json:/conf/central_targets.json:ro
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.dnpm-connect.rule=PathPrefix(`/dnpm-connect`)"
--- a/minimal/modules/dnpm-node-compose.yml
+++ b/minimal/modules/dnpm-node-compose.yml
@ -1,34 +1,99 @@
 version: "3.7"

 services:
-  dnpm-backend:
-    image: ghcr.io/kohlbacherlab/bwhc-backend:1.0-snapshot-broker-connector
-    container_name: bridgehead-dnpm-backend
+  dnpm-mysql:
+    image: mysql:9
+    healthcheck:
+      test: [ "CMD", "mysqladmin" ,"ping", "-h", "localhost" ]
+      interval: 3s
+      timeout: 5s
+      retries: 5
    environment:
-      - ZPM_SITE=${ZPM_SITE}
-      - N_RANDOM_FILES=${DNPM_SYNTH_NUM}
+      MYSQL_ROOT_HOST: "%"
+      MYSQL_ROOT_PASSWORD: ${DNPM_MYSQL_ROOT_PASSWORD}
    volumes:
-      - /etc/bridgehead/dnpm:/bwhc_config:ro
-      - ${DNPM_DATA_DIR}:/bwhc_data
-    labels:
-      - "traefik.enable=true"
-      - "traefik.http.routers.bwhc-backend.rule=PathPrefix(`/bwhc`)"
-      - "traefik.http.services.bwhc-backend.loadbalancer.server.port=9000"
-      - "traefik.http.routers.bwhc-backend.tls=true"
+      - /var/cache/bridgehead/dnpm/mysql:/var/lib/mysql

-  dnpm-frontend:
-    image: ghcr.io/kohlbacherlab/bwhc-frontend:2209
-    container_name: bridgehead-dnpm-frontend
-    links:
-      - dnpm-backend
+  dnpm-authup:
+    image: authup/authup:latest
+    container_name: bridgehead-dnpm-authup
+    volumes:
+      - /var/cache/bridgehead/dnpm/authup:/usr/src/app/writable
+    depends_on:
+      dnpm-mysql:
+        condition: service_healthy
+    command: server/core start
    environment:
-      - NUXT_HOST=0.0.0.0
-      - NUXT_PORT=8080
-      - BACKEND_PROTOCOL=https
-      - BACKEND_HOSTNAME=$HOST
-      - BACKEND_PORT=443
+      - PUBLIC_URL=https://${HOST}/auth/
+      - AUTHORIZE_REDIRECT_URL=https://${HOST}
+      - ROBOT_ADMIN_ENABLED=true
+      - ROBOT_ADMIN_SECRET=${DNPM_AUTHUP_SECRET}
+      - ROBOT_ADMIN_SECRET_RESET=true
+      - DB_TYPE=mysql
+      - DB_HOST=dnpm-mysql
+      - DB_USERNAME=root
+      - DB_PASSWORD=${DNPM_MYSQL_ROOT_PASSWORD}
+      - DB_DATABASE=auth
    labels:
      - "traefik.enable=true"
-      - "traefik.http.routers.bwhc-frontend.rule=PathPrefix(`/`)"
-      - "traefik.http.services.bwhc-frontend.loadbalancer.server.port=8080"
-      - "traefik.http.routers.bwhc-frontend.tls=true"
+      - "traefik.http.middlewares.authup-strip.stripprefix.prefixes=/auth/"
+      - "traefik.http.routers.dnpm-auth.middlewares=authup-strip"
+      - "traefik.http.routers.dnpm-auth.rule=PathPrefix(`/auth`)"
+      - "traefik.http.services.dnpm-auth.loadbalancer.server.port=3000"
+      - "traefik.http.routers.dnpm-auth.tls=true"
+
+  dnpm-portal:
+    image: ghcr.io/dnpm-dip/portal:latest
+    container_name: bridgehead-dnpm-portal
+    environment:
+      - NUXT_API_URL=http://dnpm-backend:9000/
+      - NUXT_PUBLIC_API_URL=https://${HOST}/api/
+      - NUXT_AUTHUP_URL=http://dnpm-authup:3000/
+      - NUXT_PUBLIC_AUTHUP_URL=https://${HOST}/auth/
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.dnpm-frontend.rule=PathPrefix(`/`)"
+      - "traefik.http.services.dnpm-frontend.loadbalancer.server.port=3000"
+      - "traefik.http.routers.dnpm-frontend.tls=true"
+
+  dnpm-backend:
+    container_name: bridgehead-dnpm-backend
+    image: ghcr.io/dnpm-dip/backend:latest
+    environment:
+      - LOCAL_SITE=${ZPM_SITE}:${SITE_NAME}   # Format: {Site-ID}:{Site-name}, e.g. UKT:Tübingen
+      - RD_RANDOM_DATA=${DNPM_SYNTH_NUM:--1}
+      - MTB_RANDOM_DATA=${DNPM_SYNTH_NUM:--1}
+      - HATEOAS_HOST=https://${HOST}
+      - CONNECTOR_TYPE=broker
+      - AUTHUP_URL=robot://system:${DNPM_AUTHUP_SECRET}@http://dnpm-authup:3000
+    volumes:
+      - /etc/bridgehead/dnpm/config:/dnpm_config
+      - /var/cache/bridgehead/dnpm/backend-data:/dnpm_data
+    depends_on:
+      dnpm-authup:
+        condition: service_healthy
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.services.dnpm-backend.loadbalancer.server.port=9000"
+      # expose everything
+      - "traefik.http.routers.dnpm-backend.rule=PathPrefix(`/api`)"
+      - "traefik.http.routers.dnpm-backend.tls=true"
+      - "traefik.http.routers.dnpm-backend.service=dnpm-backend"
+      # except ETL
+      - "traefik.http.routers.dnpm-backend-etl.rule=PathRegexp(`^/api(/.*)?etl(/.*)?$`)"
+      - "traefik.http.routers.dnpm-backend-etl.tls=true"
+      - "traefik.http.routers.dnpm-backend-etl.service=dnpm-backend"
+      # this needs an ETL processor with support for basic auth
+      - "traefik.http.routers.dnpm-backend-etl.middlewares=auth"
+      # except peer-to-peer
+      - "traefik.http.routers.dnpm-backend-peer.rule=PathRegexp(`^/api(/.*)?/peer2peer(/.*)?$`)"
+      - "traefik.http.routers.dnpm-backend-peer.tls=true"
+      - "traefik.http.routers.dnpm-backend-peer.service=dnpm-backend"
+      - "traefik.http.routers.dnpm-backend-peer.middlewares=dnpm-backend-peer"
+      # this effectively denies all requests
+      # this is okay, because requests from peers don't go through Traefik
+      - "traefik.http.middlewares.dnpm-backend-peer.ipWhiteList.sourceRange=0.0.0.0/32"
+
+  landing:
+    labels:
+      - "traefik.http.routers.landing.rule=PathPrefix(`/landing`)"
--- a/minimal/modules/dnpm-node-setup.sh
+++ b/minimal/modules/dnpm-node-setup.sh
@ -1,28 +1,16 @@
 #!/bin/bash

 if [ -n "${ENABLE_DNPM_NODE}" ]; then
-	log INFO "DNPM setup detected (BwHC Node) -- will start BwHC node."
+	log INFO "DNPM setup detected -- will start DNPM:DIP node."
 	OVERRIDE+=" -f ./$PROJECT/modules/dnpm-node-compose.yml"

 	# Set variables required for BwHC Node. ZPM_SITE is assumed to be set in /etc/bridgehead/<project>.conf
-	DNPM_APPLICATION_SECRET="$(echo \"This is a salt string to generate one consistent password for DNPM. It is not required to be secret.\" | sha1sum | openssl pkeyutl -sign -inkey /etc/bridgehead/pki/${SITE_ID}.priv.pem | base64 | head -c 30)"
 	if [ -z "${ZPM_SITE+x}" ]; then
 		log ERROR "Mandatory variable ZPM_SITE not defined!"
 		exit 1
 	fi
-	if [ -z "${DNPM_DATA_DIR+x}" ]; then
-		log ERROR "Mandatory variable DNPM_DATA_DIR not defined!"
-		exit 1
-	fi
-	DNPM_SYNTH_NUM=${DNPM_SYNTH_NUM:-0}
-	if grep -q 'traefik.http.routers.landing.rule=PathPrefix(`/landing`)' /srv/docker/bridgehead/minimal/docker-compose.override.yml 2>/dev/null; then
-		echo "Override of landing page url already in place"
-	else
-		echo "Adding override of landing page url"
-		if [ -f /srv/docker/bridgehead/minimal/docker-compose.override.yml ]; then
-			echo -e '  landing:\n    labels:\n      - "traefik.http.routers.landing.rule=PathPrefix(`/landing`)"' >> /srv/docker/bridgehead/minimal/docker-compose.override.yml
-		else
-			echo -e 'version: "3.7"\nservices:\n  landing:\n    labels:\n      - "traefik.http.routers.landing.rule=PathPrefix(`/landing`)"' >> /srv/docker/bridgehead/minimal/docker-compose.override.yml
-		fi
-	fi
+    mkdir -p /var/cache/bridgehead/dnpm/ || fail_and_report 1 "Failed to create '/var/cache/bridgehead/dnpm/'. Please run sudo './bridgehead install $PROJECT' again to fix the permissions."
+    DNPM_SYNTH_NUM=${DNPM_SYNTH_NUM:--1}
+    DNPM_MYSQL_ROOT_PASSWORD="$(generate_simple_password 'dnpm mysql')"
+    DNPM_AUTHUP_SECRET="$(generate_simple_password 'dnpm authup')"
 fi
--- a/minimal/modules/nngm-compose.yml
+++ b/minimal/modules/nngm-compose.yml
@ -11,7 +11,6 @@ services:
      CTS_API_KEY: ${NNGM_CTS_APIKEY}
      CRYPT_KEY: ${NNGM_CRYPTKEY}
      #CTS_MAGICPL_SITE: ${SITE_ID}TODO
-    restart: always
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.connector.rule=PathPrefix(`/nngm-connector`)"
--- a/modules/ssh-tunnel-compose.yml
+++ b/modules/ssh-tunnel-compose.yml
@ -0,0 +1,17 @@
+version: "3.7"
+
+services:
+  ssh-tunnel:
+    image: docker.verbis.dkfz.de/cache/samply/ssh-tunnel
+    container_name: bridgehead-ccp-ssh-tunnel
+    environment:
+      SSH_TUNNEL_USERNAME: "${SSH_TUNNEL_USERNAME}"
+      SSH_TUNNEL_HOST: "${SSH_TUNNEL_HOST}"
+      SSH_TUNNEL_PORT: "${SSH_TUNNEL_PORT:-22}"
+    volumes:
+      - "/etc/bridgehead/ssh-tunnel.conf:/ssh-tunnel.conf:ro"
+    secrets:
+      - privkey
+secrets:
+  privkey:
+    file: /etc/bridgehead/pki/ssh-tunnel.priv.pem
--- a/modules/ssh-tunnel-setup.sh
+++ b/modules/ssh-tunnel-setup.sh
@ -0,0 +1,6 @@
+#!/bin/bash
+
+if [ -n "$ENABLE_SSH_TUNNEL" ]; then
+	log INFO "SSH Tunnel setup detected -- will start SSH Tunnel."
+	OVERRIDE+=" -f ./$PROJECT/modules/ssh-tunnel-compose.yml"
+fi
--- a/modules/ssh-tunnel.md
+++ b/modules/ssh-tunnel.md
@ -0,0 +1,19 @@
+# SSH Tunnel Module
+
+This module enables SSH tunneling capabilities for the Bridgehead installation.
+The primary use case for this is to connect bridgehead components that are hosted externally due to security concerns.
+To connect the new components to the locally running bridgehead infra one is supposed to write a docker-compose.override.yml changing the urls to point to the corresponding forwarded port of the ssh-tunnel container.
+
+## Configuration Variables
+
+- `ENABLE_SSH_TUNNEL`: Required to enable the module
+- `SSH_TUNNEL_USERNAME`: Username for SSH connection
+- `SSH_TUNNEL_HOST`: Target host for SSH tunnel
+- `SSH_TUNNEL_PORT`: SSH port (defaults to 22)
+
+## Configuration Files
+
+The module requires the following files to be present:
+
+- `/etc/bridgehead/ssh-tunnel.conf`: SSH tunnel configuration file. Detailed information can be found [here](https://github.com/samply/ssh-tunnel?tab=readme-ov-file#configuration).
+- `/etc/bridgehead/pki/ssh-tunnel.priv.pem`: The SSH private key used to connect to the `SSH_TUNNEL_HOST`. **Passphrases for the key are not supported!**
--- a/modules/transfair-compose.yml
+++ b/modules/transfair-compose.yml
@ -0,0 +1,82 @@
+
+services:
+  transfair:
+    image: docker.verbis.dkfz.de/cache/samply/transfair:latest
+    container_name: bridgehead-transfair
+    environment:
+      # NOTE: Those 3 variables need only to be passed if their set, otherwise transfair will complain about empty url values
+      - TTP_URL
+      - TTP_ML_API_KEY
+      - TTP_GW_SOURCE
+      - TTP_GW_DOMAIN
+      - TTP_TYPE
+      - TTP_AUTH
+      - PROJECT_ID_SYSTEM
+      - FHIR_REQUEST_URL=${FHIR_REQUEST_URL}
+      - FHIR_INPUT_URL=${FHIR_INPUT_URL}
+      - FHIR_OUTPUT_URL=${FHIR_OUTPUT_URL:-http://blaze:8080}
+      - FHIR_REQUEST_CREDENTIALS=${FHIR_REQUEST_CREDENTIALS}
+      - FHIR_INPUT_CREDENTIALS=${FHIR_INPUT_CREDENTIALS}
+      - FHIR_OUTPUT_CREDENTIALS=${FHIR_OUTPUT_CREDENTIALS}
+      - EXCHANGE_ID_SYSTEM=${EXCHANGE_ID_SYSTEM:-SESSION_ID}
+      - DATABASE_URL=sqlite://transfair/data_requests.sql?mode=rwc
+      - RUST_LOG=${RUST_LOG:-info}
+      - TLS_CA_CERTIFICATES_DIR=/conf/trusted-ca-certs
+    volumes:
+      - /var/cache/bridgehead/${PROJECT}/transfair:/transfair
+      - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.middlewares.transfair-strip.stripprefix.prefixes=/transfair"
+      - "traefik.http.routers.transfair.middlewares=transfair-strip,transfair-auth"
+      - "traefik.http.routers.transfair.rule=PathPrefix(`/transfair`)"
+      - "traefik.http.services.transfair.loadbalancer.server.port=8080"
+      - "traefik.http.routers.transfair.tls=true"
+  
+  traefik:
+    labels:
+      - "traefik.http.middlewares.transfair-auth.basicauth.users=${TRANSFAIR_AUTH}"
+
+  transfair-input-blaze:
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    container_name: bridgehead-transfair-input-blaze
+    environment:
+      BASE_URL: "http://bridgehead-transfair-input-blaze:8080"
+      JAVA_TOOL_OPTIONS: "-Xmx1024m"
+      DB_BLOCK_CACHE_SIZE: 1024
+      CQL_EXPR_CACHE_SIZE: 8
+      ENFORCE_REFERENTIAL_INTEGRITY: "false"
+    volumes:
+      - "transfair-input-blaze-data:/app/data"
+    profiles: ["transfair-input-blaze"]
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.transfair-input-blaze.rule=PathPrefix(`/data-delivery`)"
+      - "traefik.http.middlewares.transfair-input-strip.stripprefix.prefixes=/data-delivery"
+      - "traefik.http.services.transfair-input-blaze.loadbalancer.server.port=8080"
+      - "traefik.http.routers.transfair-input-blaze.middlewares=transfair-input-strip,transfair-auth"
+      - "traefik.http.routers.transfair-input-blaze.tls=true"
+
+  transfair-request-blaze:
+    image: docker.verbis.dkfz.de/cache/samply/blaze:${BLAZE_TAG}
+    container_name: bridgehead-transfair-requests-blaze
+    environment:
+      BASE_URL: "http://bridgehead-transfair-requests-blaze:8080"
+      JAVA_TOOL_OPTIONS: "-Xmx1024m"
+      DB_BLOCK_CACHE_SIZE: 1024
+      CQL_EXPR_CACHE_SIZE: 8
+      ENFORCE_REFERENTIAL_INTEGRITY: "false"
+    volumes:
+      - "transfair-request-blaze-data:/app/data"
+    profiles: ["transfair-request-blaze"]
+    labels:
+      - "traefik.enable=true"
+      - "traefik.http.routers.transfair-request-blaze.rule=PathPrefix(`/data-requests`)"
+      - "traefik.http.middlewares.transfair-request-strip.stripprefix.prefixes=/data-requests"
+      - "traefik.http.services.transfair-request-blaze.loadbalancer.server.port=8080"
+      - "traefik.http.routers.transfair-request-blaze.middlewares=transfair-request-strip,transfair-auth"
+      - "traefik.http.routers.transfair-request-blaze.tls=true"
+
+volumes:
+  transfair-input-blaze-data:
+  transfair-request-blaze-data:
--- a/modules/transfair-setup.sh
+++ b/modules/transfair-setup.sh
@ -0,0 +1,31 @@
+#!/bin/bash -e
+
+function transfairSetup() {
+    if [[ -n "$TTP_URL" || -n "$EXCHANGE_ID_SYSTEM" ]]; then
+        echo "Starting transfair."
+	    OVERRIDE+=" -f ./modules/transfair-compose.yml"
+	    if [ -n "$FHIR_INPUT_URL" ]; then
+		    log INFO "TransFAIR input fhir store set to external $FHIR_INPUT_URL"
+	    else
+		    log INFO "TransFAIR input fhir store not set writing to internal blaze"
+		    FHIR_INPUT_URL="http://transfair-input-blaze:8080"
+		    OVERRIDE+=" --profile transfair-input-blaze"
+	    fi
+	    if [ -n "$FHIR_REQUEST_URL" ]; then
+		    log INFO "TransFAIR request fhir store set to external $FHIR_REQUEST_URL"
+	    else
+		    log INFO "TransFAIR request fhir store not set writing to internal blaze"
+		    FHIR_REQUEST_URL="http://transfair-requests-blaze:8080"
+		    OVERRIDE+=" --profile transfair-request-blaze"
+	    fi
+	    if [ -n "$TTP_GW_SOURCE" ]; then
+		    log INFO "TransFAIR configured with greifswald as ttp"
+		    TTP_TYPE="greifswald"
+	    elif [ -n "$TTP_ML_API_KEY" ]; then
+		    log INFO "TransFAIR configured with mainzelliste as ttp"
+		    TTP_TYPE="mainzelliste"
+        else
+		    log INFO "TransFAIR configured without ttp"
+	    fi
+    fi
+}
--- a/versions/prod
+++ b/versions/prod
@ -0,0 +1,3 @@
+FOCUS_TAG=main
+BEAM_TAG=main
+BLAZE_TAG=0.32
--- a/versions/test
+++ b/versions/test
@ -0,0 +1,3 @@
+FOCUS_TAG=develop
+BEAM_TAG=develop
+BLAZE_TAG=main
Author	SHA1	Message	Date
p.delpy@dkfz-heidelberg.de	d9921568fc	test: use batch import branch of oBDS2FHIR-REST	2025-05-02 14:41:09 +02:00
Jan	cd38957dd7	Merge pull request #289 from samply/develop Merge develop into main	2025-04-15 10:17:11 +02:00
Jan	2ddd535794	feat: ssh tunnel (#292 ) * Added ccp module for a ssh tunnel Usage details under https://github.com/samply/ssh-tunnel * chore: update ssh-tunnel image to harbor * feat: ssh tunnel support diffrent port * chore: fix indentation * chore: move to top level modules * docs: add ssh-tunnel docs --------- Co-authored-by: Tobias Kussel <tobias.kussel@dkfz-heidelberg.de>	2025-04-14 10:45:15 +02:00
Jan	973547c322	chore(transfair): add new gw option (#291 )	2025-04-11 08:37:31 +02:00
Jan	6b649c9233	feat: expose transfair via traefik (#290 ) Note: Requires a bridgehead install to generate the basic auth user	2025-04-09 13:19:52 +02:00
Tim Schumacher	3144ee5214	Fix GitLab token syncing for BBMRI	2025-03-31 11:08:59 +02:00
janskiba	68804dc71b	feat: add transfair setup to ccp	2025-03-26 13:11:43 +01:00
janskiba	e5aebfe382	chore!: update transfair config	2025-03-26 13:11:43 +01:00
Jan	4ef585bfc5	Merge pull request #281 from samply/develop Merge develop into main	2025-03-17 10:02:58 +01:00
Torben Brenner	6f3aba1eaa	feat: support self-signed cert on ttp (#283 )	2025-03-12 15:45:55 +01:00
Jan	82ced89b33	chore: unify blaze versioning and upgrade to 0.32 (#277 )	2025-03-12 12:52:00 +01:00
Martin Lablans	5d94bac0e2	Mount queries_to_cache.conf readonly (#282 )	2025-03-10 16:03:05 +01:00
Tim Schumacher	83555540f5	chore: update central Secret Sync proxy ID (#280 )	2025-03-10 12:08:19 +01:00
Pierre Delpy	e396e00178	Fix/ccp cql cache (#279 ) * fix: adapt focus caching to new cql and add focus caching for cce and itcc --------- Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>	2025-03-07 12:20:38 +01:00
Tim Schumacher	ecb29830e4	Send the origin of /etc/bridgehead repo to Secret Sync This is to anticipate an upcoming change in Secret Sync that will allow it to support multiple GitLab servers, e.g. verbis GitLab and BBMRI GitLab.	2025-03-05 11:04:22 +01:00
Torben Brenner	98121c17e8	Make Codeowners Rule apply to all Files in Repo	2025-02-20 17:28:38 +01:00
Torben Brenner	e38511e118	Add Codeowners File	2025-02-20 17:20:54 +01:00
Torben Brenner	6ca67ca082	Merge pull request #270 from samply/develop	2025-02-20 15:46:40 +01:00
Pierre Delpy	8334fac84d	fix: use correct obds2fhir-rest image --------- Co-authored-by: Pierre Delpy <p.delpy@dkfz-heidelberg.de>	2025-02-20 13:48:10 +01:00
Torben Brenner	8000356b57	docs: explicitly clone main branch (#269 )	2025-02-07 11:21:43 +01:00
Torben Brenner	74d8e68d96	Merge pull request #258 from samply/feat/routine-connector feat: transFAIR	2025-02-07 10:39:54 +01:00
Torben Brenner	c568a56651	refactor: set transfair log to info	2025-02-07 10:30:43 +01:00
Torben Brenner	8384143387	fix: make transfair reach the internal blaze stores	2025-02-07 09:17:17 +01:00
Torben Brenner	8fe73a8123	fix: support mode without ttp	2025-02-07 09:17:07 +01:00
Torben Brenner	bca63e82a9	fix: don't use return in transfairSetup For some reason the return not only exits transfairSetup, but also the bridgehead script	2025-02-06 15:43:37 +01:00
Jan	721627a78f	feat: migrate to new dnpm:dip node (#251 ) * feat: migrate to new dnpm:dip node * hardcode dnpm connector type to broker * use `SITE_NAME` for dnpm `LOCAL_SITE` * host central targets in git * dnpm: add goettingen to central targets * dnpm: add uksh to central targets * dnpm: replace named volumes with fs volumes * chore: change dnpm images * chore: pin mysql * dnpm: Secure endpoints for ETL and p2p communications (#254) * fix authup redirect (#262) When a OIDC provider is configured, you'll get redirected to authup by Keycloak which redirects you to the DNPM:DIP. Currently the url looks like this: https://myserver/authup//someurl and produces an error. Manually removing the additional / fixes the issue. * Whitespace formatting --------- Co-authored-by: Niklas <niklas@ytvwld.de> Co-authored-by: Niklas Reimer <niklas@backbord.net> Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>	2025-02-05 13:24:28 +01:00
Jan	e08ff92401	Merge pull request #268 from samply/main Main backport	2025-02-05 08:45:35 +01:00
Jan	e3553370b6	feat: unify version handeling (#265 )	2025-01-29 13:17:59 +01:00
Jan	1ad73d8f82	fix: properly load oidc secrets (#267 )	2025-01-29 10:59:27 +01:00
Tobias Kussel	0b6fa439ba	Merge pull request #266 from samply/fix/docker-hub-link Fixed Docker Hub URL list link	2025-01-29 09:52:26 +01:00
Martin Lablans	615990b92a	Use secret-sync for gitpassword (#257 ) --------- Co-authored-by: Tim Schumacher <tim@tschumacher.net> Co-authored-by: Jan <59206115+Threated@users.noreply.github.com> Co-authored-by: Tim Schumacher <tim.schumacher@dkfz-heidelberg.de>	2025-01-28 14:53:49 +01:00
Tobias Kussel	db950d6d87	Fixed Docker Hub URL list link	2025-01-28 08:59:57 +00:00
patrickskowronekdkfz	6a71da3dd1	docs: documentation for changing your configuration repository access token (#256 )	2025-01-27 10:49:10 +01:00
patrickskowronekdkfz	138a1fa5f1	fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259 )	2025-01-27 10:49:10 +01:00
patrickskowronekdkfz	39a87bcf61	Update: Blaze to version 0.31 (#260 )	2025-01-27 10:49:10 +01:00
Jan	655d0d24c7	fix: remove `restart: always` in compose files (#261 )	2025-01-27 10:49:10 +01:00
janskiba	fa0d9fb8b4	restrict additional blaze memory usage	2025-01-24 09:23:08 +00:00
janskiba	139fcecabe	redo transfair setup	2025-01-23 13:27:42 +00:00
janskiba	2058a7a5c9	update image url	2025-01-23 12:06:43 +00:00
janskiba	47364f999e	wip: routine connector	2025-01-21 13:55:08 +00:00
patrickskowronekdkfz	910289079b	docs: documentation for changing your configuration repository access token (#256 )	2025-01-21 09:35:25 +01:00
patrickskowronekdkfz	1003cd73cf	fix: changed ccp_ppi to use IDMANAGEMENT_FRIENDLY_ID instead of SITE_NAME (#259 )	2025-01-21 09:30:20 +01:00
patrickskowronekdkfz	3d1105b97c	Update: Blaze to version 0.31 (#260 )	2025-01-21 09:28:47 +01:00
Jan	5c28e704d2	fix: remove `restart: always` in compose files (#261 )	2025-01-21 09:27:27 +01:00
Tobias Kussel	df1ec21848	Merge pull request #246 from samply/develop set environment variables needed for the focus blaze-and-sql endpoint to work when fhir2sql is enabled	2024-12-11 10:53:27 +01:00
patrickskowronekdkfz	e3510363ad	fix: remove credentials from git remote, if update fails (#253 ) Signed-off-by: Patrick Skowronek <patrick.skowronek@dkfz-heidelberg.de>	2024-12-10 17:18:07 +01:00
Enola Knezevic	45aefd24e5	renamed exporter API key to EXPORTER_API_KEY (#252 )	2024-12-06 11:27:38 +01:00
patrickskowronekdkfz	122ff16bb1	fix: use verbis cache image instead of docker-hub (#250 )	2024-11-12 09:58:17 +01:00
djuarezgf	967e45624e	Add exporter configuration to focus (#249 )	2024-11-05 15:46:00 +01:00
Tobias Kussel	8cd5b93b95	Merge pull request #237 from samply/feat/ccp-ppi Feat/ccp ppi	2024-11-05 13:59:01 +01:00
Jan	52c24ee6fa	fix(fhir2sql): add the postgres connection string to focus (#245 )	2024-11-05 13:34:36 +01:00
davidmscholz	26712d3567	feat: add and set FOCUS_ENDPOINT_TYPE to support fhir2sql (#244 ) * add and set FOCUS_ENDPOINT_TYPE Co-authored-by: Jan <59206115+Threated@users.noreply.github.com> --------- Co-authored-by: davidmscholz <david.scholz@dkfz-heidelberg.de> Co-authored-by: Jan <59206115+Threated@users.noreply.github.com>	2024-10-30 15:21:15 +01:00
Pierre Delpy	a4e292dd18	Merge pull request #241 from samply/develop feat: add focus tags in ccp and bbmri (#240)	2024-10-23 07:24:06 +02:00
Enola Knezevic	eea17c3478	fix: remove invalid beam-proxy tag and add it to focus instead (#242 )	2024-10-22 16:48:48 +02:00
Pierre Delpy	cf5230963c	feat: add focus tags in ccp and bbmri (#240 ) Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de>	2024-10-21 11:00:01 +02:00
Pierre Delpy	75089ab428	Merge pull request #221 from samply/develop Keep develop in sync with main	2024-10-15 14:30:15 +02:00
Pierre Delpy	7aaee5e7d5	feat: add auto archiving action (#238 ) * feat: add auto archiving action --------- Co-authored-by: p.delpy@dkfz-heidelberg.de <p.delpy@dkfz-heidelberg.de> Co-authored-by: Martin Lablans <6804500+lablans@users.noreply.github.com>	2024-10-15 13:03:42 +02:00
patrickskowronekdkfz	3312ca8a64	feat: added blaze cql cache (#236 )	2024-10-10 14:34:28 +02:00
Patrick Skowronek	23981062bb	Move ppi to id-management	2024-10-10 13:27:24 +02:00
Patrick Skowronek	8e7fe6851e	fix: use correct mainzelliste api key	2024-10-10 13:11:43 +02:00
Patrick Skowronek	760d599b7c	Add CCP-PPI	2024-10-10 12:56:36 +02:00
Pierre Delpy	072ee348fc	fix: deactivate landingpage for KR project (#234 ) fix: deactivate landingpage for KR project	2024-10-09 09:24:27 +02:00
Torben Brenner	f328e40963	Merge pull request #233 from samply/fix/id-management-redirection Allow Usage of Centraxx Interface without login	2024-10-08 13:30:44 +02:00
Torben Brenner	eb2955872f	fix: allow usage of centraxx interface without login Before this change CentraXX was redirected to the central login servers then interacting with the id-management	2024-10-01 13:30:23 +02:00