remove readme

Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>

kr/docker-compose.yml

@@ -1,6 +1,10 @@
 version: "3.7"
 
 services:
+  landing:
+    deploy:
+      replicas: 0 #deactivate landing page
+
   blaze:
     image: docker.verbis.dkfz.de/cache/samply/blaze:0.28
     container_name: bridgehead-kr-blaze

kr/modules/lens-compose.yml

@@ -1,6 +1,8 @@
 version: "3.7"
 services:
   landing:
+    deploy:
+      replicas: 1 #reactivate if lens is in use
     container_name: lens_federated-search
     image: docker.verbis.dkfz.de/ccp/lens:${SITE_ID}
     labels:

minimal/modules/onko.root.pem

@@ -1,20 +0,0 @@
------BEGIN CERTIFICATE-----
-MIIDNTCCAh2gAwIBAgIUcGXxIZMxUOoI2kf8FArsOvQfvwwwDQYJKoZIhvcNAQEL
-BQAwFjEUMBIGA1UEAxMLQnJva2VyLVJvb3QwHhcNMjQxMDMxMDkxOTUwWhcNMzQx
-MDI5MDkyMDIwWjAWMRQwEgYDVQQDEwtCcm9rZXItUm9vdDCCASIwDQYJKoZIhvcN
-AQEBBQADggEPADCCAQoCggEBALX+8X4r2mWki4HLs2E5dXR9oGL+8Zos1s9Rmeaz
-FgxnpKf6wlop4ZlJd01Pgi3HNFo7XPFi76zalRsHS+rWN3tOy6r5KIjCYiqPb3AY
-luZuy7jAQOBGHKODVfJH1QCRqsvEwRbOU6nNFAkMcjSxt5+PmwB1U7+Kvmly4sYI
-i4t/gyVvcfEsiZ5LYQ7IpEf+or2Ugpb6j4KlTn+gKFzSfgl+yRhE0bnFEf0eBa+r
-HLLpq4hL16+pb6/WZ4DfM9QDioX6Tj2Hje9Va4RJ2dROENuq5sJugdE28hH9qEwE
-2bmKh6qvblgwkI3rJFkYH+scBtLEUH0KJY+SZ1iYHkoEaCkCAwEAAaN7MHkwDgYD
-VR0PAQH/BAQDAgEGMA8GA1UdEwEB/wQFMAMBAf8wHQYDVR0OBBYEFOe/txl3B7Sd
-NFE+615Z3rfzqBR4MB8GA1UdIwQYMBaAFOe/txl3B7SdNFE+615Z3rfzqBR4MBYG
-A1UdEQQPMA2CC0Jyb2tlci1Sb290MA0GCSqGSIb3DQEBCwUAA4IBAQA3kVJlBOHn
-Tscsk1FKLYNWE/fr3oUNPUYzXi4lln+UNdRHSdXUPzBp4B5oIi3uymdYg2Rzq9Su
-/xjE7++thgQJ37l/DpCm/TUmUFfH5ZqcaMPA+L21mw9G129teCP1nVuXjtYhwnBk
-fRiz1tzpO1rZCxC+vxIhcPeYSKbaAQTywtJu0MpduGFrfIwLtrxa4GLRQFD06KPx
-Ijq6Pt6kC2abcYtKCMCWmpzttQAq4csWbmWINKkD6GMkuJVpzEx3csg8rCyPCaX0
-HedLiKRqaSOzDRnIWfD2CQX6qMg8TNtnxFnZTlc9honxnwcGaeLZKNEg+1oPA40V
-NOffBIMF4DAV
------END CERTIFICATE-----

minimal/modules/onkofdz-compose.yml

@@ -1,91 +0,0 @@
-version: "3.7"
-
-services:
-  beam-proxy:
-    image: samply/beam-proxy:develop-sockets
-    container_name: bridgehead-beam-proxy
-    environment:
-      BROKER_URL: ${BROKER_URL}
-      PROXY_ID: ${PROXY_ID}
-      PRIVKEY_FILE: /run/secrets/proxy.pem
-      ALL_PROXY: http://forward_proxy:3128
-      TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
-      ROOTCERT_FILE: /conf/root.crt.pem
-      APP_beamsel_KEY: ${BEAMSEL_SECRET}
-    secrets:
-      - proxy.pem
-    depends_on:
-      - "forward_proxy"
-    volumes:
-      - /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
-      - /srv/docker/bridgehead/minimal/modules/onko.root.pem:/conf/root.crt.pem:ro
-  postgres:
-    image: postgres:9.5-alpine
-    container_name: bridgehead-onkofdz-postgres
-    environment:
-      POSTGRES_DB: mainzelliste-sel
-      POSTGRES_USER: mainzelliste-sel
-      POSTGRES_PASSWORD: ${MAINZELLISTE_DB_PASSWORD}
-    volumes:
-      # - ./postgres-logs:/var/log/postgresql
-      - ml-data:/var/lib/postgresql/data
-    depends_on:
-      - secureepilinker
-  mainzelliste:
-    image: medicalinformatics/mainzelliste:secureepilinker-alpha
-    container_name: bridgehead-onkofdz-mainzelliste
-    environment:
-      ML_API_KEY: ${LOCAL_SEL_API_KEY}
-      ML_DB_HOST: postgres
-      ML_DB_PORT: 5432
-      ML_DB_USER: mainzelliste-sel
-      ML_DB_NAME: mainzelliste-sel
-      ML_DB_PASS: ${MAINZELLISTE_DB_PASSWORD}
-      ML_LOCAL_ID: ${SITE_ID}
-      ML_LOCAL_SEL_URL: http://secureepilinker:8161
-      ML_LOCAL_CALLBACK_LINK_URL: http://mainzelliste:8080/Communicator/linkCallback
-      ML_LOCAL_CALLBACK_MATCH_URL: http://mainzelliste:8080/Communicator/matchCallback/${REMOTE_SEL_SITE}
-      ML_LOCAL_DATA_SERVICE_URL: http://mainzelliste:8080/Communicator/getAllRecords
-      ML_LOCAL_AUTHENTICATION_TYPE: apiKey
-      ML_LOCAL_API_KEY: ${LOCAL_SEL_API_KEY}
-      ML_SERVER_0_REMOTEID: ${REMOTE_SEL_SITE}
-      ML_SERVER_0_IDTYPE: link-${SITE_ID}-${REMOTE_SEL_SITE}
-      ML_SERVER_0_REMOTE_SEL_URL: http://beamsel:8080
-      ML_SERVER_0_APIKEY: ${REMOTE_SEL_API_KEY}
-      ### Linkage Service not used for matching
-      ML_SERVER_0_LINKAGE_SERVICE_BASE_URL: ${LS_SEL_URL}
-      ML_SERVER_0_LINKAGE_SERVICE_AUTH_TYPE: apiKey
-      ML_SERVER_0_LINKAGE_SERVICE_SHARED_KEY: ${LS_SEL_SHARED_KEY}
-      ML_LOG_MODE: stdout #stdout=stdout everything else =logging in mainzelliste.log
-      ML_LOG_LEVEL: INFO
-      no_proxy: "localhost,secureepilinker"
-    volumes:
-      # - ./logs:/usr/local/tomcat/logs/
-      - /etc/bridgehead/onkofdz/config/mainzelliste.conf.docker:/run/secrets/mainzelliste.docker.conf
-      - /etc/bridgehead/onkofdz/config/sel.conf.docker:/run/secrets/sel.docker.conf
-    depends_on:
-      - postgres
-      - secureepilinker
-  secureepilinker:
-    image: docker.verbis.dkfz.de/onkofdz/secureepilinker:beamsel
-    container_name: bridgehead-onkofdz-secureepilinker
-    environment:
-      no_proxy: "mainzelliste,beamsel"
-    volumes:
-      - "/etc/bridgehead/onkofdz/config/epilinker.serverconf.json:/data/serverconf.json"
-    command: '-vvvv'
-  beamsel:
-    image: docker.verbis.dkfz.de/onkofdz/beam-sel
-    container_name: bridgehead-onkofdz-beamsel
-    environment:
-      BEAM_URL: "http://beam-proxy:8081"
-      BEAM_SECRET: ${BEAMSEL_SECRET}
-      BEAM_ID: beamsel.${PROXY_ID}
-      SEL_ADDR: "secureepilinker:8161"
-    depends_on:
-      - secureepilinker
-volumes:
-  ml-data:
-secrets:
-  proxy.pem:
-    file: /etc/bridgehead/pki/${SITE_ID}.priv.pem

minimal/modules/onkofdz-setup.sh

@@ -1,15 +0,0 @@
-#!/bin/bash
-
-if [ -n "${ENABLE_ONKOFDZ}" ]; then
-  BROKER_ID=test.broker.onkofdz.samply.de
-  BROKER_URL=https://${BROKER_ID}
-  PROXY_ID=${SITE_ID}.${BROKER_ID}
-  BEAMSEL_SECRET="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 20)"
-  SUPPORT_EMAIL=tobias.kussel@dkfz-heidelberg.de
-  PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
-
-  BROKER_URL_FOR_PREREQ=$BROKER_URL
-
-  log INFO "Loading OnkoFDZ module"
-  OVERRIDE+=" -f ./$PROJECT/modules/onkofdz-compose.yml"
-fi