Use relative paths in teiler

Co-authored-by: Tobias Kussel <TKussel@users.noreply.github.com>

README.md

@@ -24,6 +24,9 @@ This repository is the starting point for any information and tools you will nee
     - [BBMRI-ERIC Directory entry needed](#bbmri-eric-directory-entry-needed)
     - [Directory sync tool](#directory-sync-tool)
     - [Loading data](#loading-data)
+    - [Teiler (Frontend)](#teiler-frontend)
+    - [Data Exporter Service](#data-exporter-service)
+      - [Data Quality Report](#data-quality-report)
 4. [Things you should know](#things-you-should-know)
     - [Auto-Updates](#auto-updates)
     - [Auto-Backups](#auto-backups)
@@ -379,6 +382,37 @@ Normally, you will need to build your own ETL to feed the Bridgehead. However, t
 
 You can find the profiles for generating FHIR in [Simplifier](https://simplifier.net/bbmri.de/~resources?category=Profile).
 
+### Teiler (Frontend)
+
+Teiler is the web-based frontend of the Bridgehead, providing access to its various internal, and external services and components.   
+To learn how to integrate your custom module into Teiler, please refer to https://github.com/samply/teiler-dashboard.
+- To activate Teiler, set the following environment variable in your `<PROJECT>.conf` file:  
+
+```bash
+ENABLE_TEILER=true
+```
+
+### Data Exporter Service
+
+The Exporter is a dedicated service for extracting and exporting Bridgehead data in (tabular) formats such as Excel, CSV, Opal, JSON, XML, ...  
+- To enable the Exporter service, set the following environment variable in your `<PROJECT>.conf` file:  
+
+```bash
+ENABLE_EXPORTER=true
+```
+
+#### Data Quality Report
+To assess the quality and plausibility of your imported data, the Reporter component is pre-configured to generate Excel reports with data quality metrics and statistical analyses. Reporter is part of the Exporter and can be enabled by setting the same environment variable in your `<PROJECT>.conf` file:
+```bash
+ENABLE_EXPORTER=true
+```
+
+For convenience, it's recommended to enable the Teiler web frontend alongside the Exporter to access export and quality control features via a web interface: set the following environment varibles in your `<PROJECT>.conf` file:
+```bash
+ENABLE_TEILER=true
+ENABLE_EXPORTER=true
+```
+
 ## Things you should know
 
 ### Auto-Updates

bbmri/modules/eric.acc.root.crt.pem

@@ -1,20 +1,20 @@
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bbmri/modules/teiler-compose.yml

@@ -13,13 +13,13 @@ services:
       - "traefik.http.middlewares.teiler_orchestrator_bbmri_strip.stripprefix.prefixes=/bbmri-teiler"
       - "traefik.http.routers.teiler_orchestrator_bbmri.middlewares=teiler_orchestrator_bbmri_strip"
     environment:
-      TEILER_BACKEND_URL: "https://${HOST}/bbmri-teiler-backend"
+      TEILER_BACKEND_URL: "/bbmri-teiler-backend"
-      TEILER_DASHBOARD_URL: "https://${HOST}/bbmri-teiler-dashboard"
+      TEILER_DASHBOARD_URL: "/bbmri-teiler-dashboard"
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
       HTTP_RELATIVE_PATH: "/bbmri-teiler"
 
   teiler-dashboard:
-    image: docker.verbis.dkfz.de/ccp/samply/teiler-dashboard:test
+    image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
     container_name: bridgehead-teiler-dashboard
     labels:
       - "traefik.enable=true"
@@ -30,8 +30,8 @@ services:
       - "traefik.http.routers.teiler_dashboard_bbmri.middlewares=teiler_dashboard_bbmri_strip"
     environment:
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
-      TEILER_BACKEND_URL: "https://${HOST}/bbmri-teiler-backend"
+      TEILER_BACKEND_URL: "/bbmri-teiler-backend"
-      TEILER_DASHBOARD_URL: "https://${HOST}/bbmri-teiler-dashboard"
+      TEILER_DASHBOARD_URL: "/bbmri-teiler-dashboard"
       OIDC_URL: "${OIDC_URL}"
       OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
       OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
@@ -40,7 +40,7 @@ services:
       TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
       TEILER_PROJECT: "${PROJECT}"
       EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
-      TEILER_ORCHESTRATOR_URL: "https://${HOST}/bbmri-teiler"
+      TEILER_ORCHESTRATOR_URL: "/bbmri-teiler"
       TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/bbmri-teiler"
       TEILER_USER: "${OIDC_USER_GROUP}"
       TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
@@ -61,10 +61,9 @@ services:
     environment:
       LOG_LEVEL: "INFO"
       APPLICATION_PORT: "8085"
-      APPLICATION_ADDRESS: "${HOST}"
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
       TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/bbmri-teiler"
-      TEILER_ORCHESTRATOR_URL: "https://${HOST}/bbmri-teiler"
+      TEILER_ORCHESTRATOR_URL: "/bbmri-teiler"
-      TEILER_DASHBOARD_DE_URL: "https://${HOST}/bbmri-teiler-dashboard/de"
+      TEILER_DASHBOARD_DE_URL: "/bbmri-teiler-dashboard/de"
-      TEILER_DASHBOARD_EN_URL: "https://${HOST}/bbmri-teiler-dashboard/en"
+      TEILER_DASHBOARD_EN_URL: "/bbmri-teiler-dashboard/en"
       HTTP_PROXY: "http://forward_proxy:3128"

ccp/modules/teiler-compose.yml

@@ -13,13 +13,13 @@ services:
       - "traefik.http.middlewares.teiler_orchestrator_ccp_strip.stripprefix.prefixes=/ccp-teiler"
       - "traefik.http.routers.teiler_orchestrator_ccp.middlewares=teiler_orchestrator_ccp_strip"
     environment:
-      TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
+      TEILER_BACKEND_URL: "/ccp-teiler-backend"
-      TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
+      TEILER_DASHBOARD_URL: "/ccp-teiler-dashboard"
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE_LOWER_CASE}"
       HTTP_RELATIVE_PATH: "/ccp-teiler"
 
   teiler-dashboard:
-    image: docker.verbis.dkfz.de/ccp/samply/teiler-dashboard:test
+    image: docker.verbis.dkfz.de/cache/samply/teiler-dashboard:develop
     container_name: bridgehead-teiler-dashboard
     labels:
       - "traefik.enable=true"
@@ -30,8 +30,8 @@ services:
       - "traefik.http.routers.teiler_dashboard_ccp.middlewares=teiler_dashboard_ccp_strip"
     environment:
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
-      TEILER_BACKEND_URL: "https://${HOST}/ccp-teiler-backend"
+      TEILER_BACKEND_URL: "/ccp-teiler-backend"
-      TEILER_DASHBOARD_URL: "https://${HOST}/ccp-teiler-dashboard"
+      TEILER_DASHBOARD_URL: "/ccp-teiler-dashboard"
       OIDC_URL: "${OIDC_URL}"
       OIDC_CLIENT_ID: "${OIDC_PUBLIC_CLIENT_ID}"
       OIDC_TOKEN_GROUP: "${OIDC_GROUP_CLAIM}"
@@ -40,7 +40,7 @@ services:
       TEILER_ADMIN_PHONE: "${OPERATOR_PHONE}"
       TEILER_PROJECT: "${PROJECT}"
       EXPORTER_API_KEY: "${EXPORTER_API_KEY}"
-      TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
+      TEILER_ORCHESTRATOR_URL: "/ccp-teiler"
       TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
       TEILER_USER: "${OIDC_USER_GROUP}"
       TEILER_ADMIN: "${OIDC_ADMIN_GROUP}"
@@ -61,12 +61,11 @@ services:
     environment:
       LOG_LEVEL: "INFO"
       APPLICATION_PORT: "8085"
-      APPLICATION_ADDRESS: "${HOST}"
       DEFAULT_LANGUAGE: "${TEILER_DEFAULT_LANGUAGE}"
       TEILER_ORCHESTRATOR_HTTP_RELATIVE_PATH: "/ccp-teiler"
-      TEILER_ORCHESTRATOR_URL: "https://${HOST}/ccp-teiler"
+      TEILER_ORCHESTRATOR_URL: "/ccp-teiler"
-      TEILER_DASHBOARD_DE_URL: "https://${HOST}/ccp-teiler-dashboard/de"
+      TEILER_DASHBOARD_DE_URL: "/ccp-teiler-dashboard/de"
-      TEILER_DASHBOARD_EN_URL: "https://${HOST}/ccp-teiler-dashboard/en"
+      TEILER_DASHBOARD_EN_URL: "/ccp-teiler-dashboard/en"
       HTTP_PROXY: "http://forward_proxy:3128"
       ENABLE_MTBA: "${ENABLE_MTBA}"
       ENABLE_DATASHIELD: "${ENABLE_DATASHIELD}"

lib/install-bridgehead.sh

@@ -49,8 +49,8 @@ if [ -z "$TRANSFAIR_AUTH" ]; then
   fi
 fi
 
-if [ -z "$EXPORTER_USER" ]; then
+if [ "$ENABLE_EXPORTER" == "true" ] && [ -z "$EXPORTER_USER" ]; then
-  log "INFO" "Now generating basic auth for the exporter and reporter (see adduser in bridgehead for more information). "
+  log "INFO" "Now generating basic auth for the exporter and reporter (see adduser in bridgehead for more information)."
   generated_passwd="$(cat /proc/sys/kernel/random/uuid | sed 's/[-]//g' | head -c 32)"
   add_basic_auth_user $PROJECT $generated_passwd "EXPORTER_USER" $PROJECT
 fi