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ehds2

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feat/blaze-frontend

feat/cBioPortal

feat/dnpm-dip

feat/routine-connector-minor-fixes

feat/selinux

feature/accessTokenFromConfiguration

feature/add-pscc

feature/add-qb-to-cce

feature/addExporterAndTeilerToEric

feature/auto-pr

feature/cBioPortal

feature/cbioportal-datashield

feature/component-moniotring

feature/dnpm-extra-broker

feature/exporter-docu

feature/externalize-versions

feature/feedback-agent

feature/nngm-rest

feature/opal

feature/opal-client-for-new-token-manager

feature/qr-basic-auth

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feature/snap

feature/teiler-for-ccp-and-bbmri

fix/kr-deactivate-landingpage

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main

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ovis

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pro/lemedart

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qr_bbmri

refactor/datashield-auth-config

refactor/independent-modules

refactor/logging

revert-223-feat/add-dkfz-hector-ki-project

set_env_variables_needed_for_fhir2sql

test-switch-branch

test/airgapped-blaze

test/exporter-no-python

test/obds2fhir-batch-import

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7b96864e63 Merge pull request #136 from samply/bugfix/mtba-1.0.0 djuarezgf 2023-11-30 13:57:58 +01:00
2ba9645ab4 Bugfix: MTBA 1.0.0 juarez 2023-11-30 12:29:58 +01:00
6457b21ac6 Merge pull request #130 from samply/documentation/data_load DavidCroftDKFZ 2023-11-21 11:10:52 +01:00
7ce501548a Merge pull request #134 from samply/feature/ccp-obfuscation patrickskowronekdkfz 2023-11-17 13:50:34 +01:00
5558d4fefc Merge branch 'main' into documentation/gba_additions Croft 2023-11-08 10:05:00 +01:00
545c6175f5 Replaced reference to "bbmri" with more generic "project". Croft 2023-11-08 09:55:21 +01:00
096225a77d Incorporated Patrick's comments for PR 130 Croft 2023-11-06 09:28:43 +01:00
2252504d78 add bwhc node module Tobias Kussel 2023-11-03 07:33:16 +00:00
6bf34b7732 Enable obfuscation for ccp queries Tobias Kussel 2023-11-02 07:34:56 +00:00
dc0d42ca07 Merge pull request #133 from samply/fix/auth_proxy_usage feat/cBioPortal Martin Lablans 2023-10-26 11:41:06 +02:00
90248b331f fix: adjusted the forwarding of env vars to forward proxy Patrick Skowronek 2023-10-25 15:22:08 +02:00
e693a8f0e6 Merge pull request #132 from samply/fix/proxy-git-update Martin Lablans 2023-10-25 11:10:09 +02:00
d16eb6c94d git requires http proxy config even vor https connections Tobias Kussel 2023-10-25 08:47:02 +00:00
b52d49b4ef Merge pull request #127 from samply/fix/proxy_usage Martin Lablans 2023-10-24 19:15:13 +02:00
699d8d6398 fix: git call Patrick Skowronek 2023-10-24 10:42:36 +02:00
7e7d184e8b Merge pull request #131 from samply/feature/adt2fhir-rest Pierre Delpy 2023-10-24 09:45:08 +02:00
392afb6410 Fix code lablans 2023-10-24 07:23:24 +00:00
f855a19865 Fix sed (?) lablans 2023-10-24 07:12:18 +00:00
bbfc607104 Always define new vars lablans 2023-10-24 07:07:06 +00:00
f008b18760 Redo proxy, set HTTPS_PROXY_HOST and HTTPS_PROXY_PORT lablans 2023-10-24 07:01:22 +00:00
0555786435 fix bash logic p.delpy@dkfz-heidelberg.de 2023-10-24 07:41:17 +02:00
262b9bd62e add adt2fhir-rest service p.delpy@dkfz-heidelberg.de 2023-10-11 08:09:49 +02:00
e0990d99cb Comment out HTTP proxy parsing Tobias Kussel 2023-10-23 11:06:59 +00:00
9fc8564e4e Fixed git proxy check Martin Lablans 2023-10-20 16:47:15 +02:00
74817a21da Rewrote proxy detection logic to deal with all combinations of no/authenticated/unauthenticated proxy servers Martin Lablans 2023-10-20 15:59:24 +02:00
87cc0acecc Corrected Link to Docker Daemon Proxy Configuration (#129) Torben Brenner 2023-10-20 14:18:56 +02:00
93026d2d89 Change tag for bridgehead-landingpage Martin Lablans 2023-10-20 13:58:46 +02:00
d9794a1eea Information about loading data into the Bridgehead's FHIR store Croft 2023-10-20 10:21:52 +02:00
68cd62b981 reaf: var naming for proxy usage in our bridgehead scripts Patrick Skowronek 2023-10-10 10:43:22 +02:00
85446b0a3e Added SECURE_PROXY if the https and http proxy are the same Patrick Skowronek 2023-10-09 09:43:30 +02:00
4bdad68da5 Added proxy user + pw detection Patrick Skowronek 2023-10-05 09:43:57 +02:00
3dadeef786 Merge pull request #125 from samply/urls Martin Lablans 2023-09-27 10:06:48 +02:00
5ca11d1bf5 Update README.md Martin Lablans 2023-09-27 10:06:28 +02:00
997c4df5c0 Merge pull request #126 from samply/fix/docker-cache Martin Lablans 2023-09-27 09:42:14 +02:00
3c0a994237 use docker cache for beam-enroll and vaultfetcher Pierre Delpy 2023-09-27 09:22:11 +02:00
377b003207 Refactor, add BBMRI-ERIC gitlab Martin Lablans 2023-09-27 09:12:48 +02:00
0c75ac2810 Add healthchecks Martin Lablans 2023-09-27 08:48:45 +02:00
d21c6d7835 Move git/docker proxy config Martin Lablans 2023-09-26 13:42:14 +02:00
de10c8508e readme: URL list Martin Lablans 2023-09-26 13:17:36 +02:00
b3ace55898 Mentioned data protection concept and added GBA Firewall change Croft 2023-09-25 13:48:41 +02:00
b07731442b Merge pull request #121 from samply/chown-message Martin Lablans 2023-09-25 10:23:50 +02:00
52f6193fde Merge pull request #123 from samply/correct-broker-url patrickskowronekdkfz 2023-09-22 09:37:35 +02:00
a4ce7f4eb6 Fix subsitution janskiba 2023-09-22 07:35:05 +00:00
49b5cb976a Use GBN Broker for timesync if ERIC is disabled janskiba 2023-09-22 07:25:04 +00:00
50ef08ca6d Merge pull request #122 from samply/check-curl Jan 2023-09-22 08:22:52 +02:00
c354c450f3 Check if curl is installed janskiba 2023-09-21 16:23:22 +00:00
6bb0471a64 Merge pull request #120 from samply/maintenance/updatePostgres Martin Lablans 2023-09-19 11:34:45 +02:00
2b0cdc0345 Fix error messages about wrong permissions Martin Lablans 2023-09-19 11:33:19 +02:00
850a8eb973 chore: update postgres from 15.1 to 15.4 Torben Brenner 2023-09-18 15:06:00 +02:00
4537617cd0 Added container name for monitoring apps and moved them into respective compose files Patrick Skowronek 2023-09-07 08:16:47 +02:00
6fa587fe4f Added component monitoring for bbmri Patrick Skowronek 2023-09-05 14:40:46 +02:00
48d9a034c7 Added local bridgehead monitoring Patrick Skowronek 2023-09-05 13:05:58 +02:00
6b1ea4c74e Update gbn-setup.sh patrickskowronekdkfz 2023-09-04 15:54:22 +02:00
8c8ebb9298 Added gbn broker url and e-mail Patrick Skowronek 2023-09-04 15:30:03 +02:00
0536023ceb Merge pull request #117 from samply/feature/bbmri_de patrickskowronekdkfz 2023-09-04 14:44:38 +02:00
3a3a9d09a9 Added broker.bbmri.de root cert Patrick Skowronek 2023-09-04 14:30:52 +02:00
c1f2131438 Merge pull request #116 from samply/main_missing_section DavidCroftDKFZ 2023-09-01 14:13:10 +02:00
60e0db00a7 Changed section title in TOC Croft 2023-09-01 14:02:46 +02:00
191be47252 Merge pull request #106 from samply/main_tls_docu DavidCroftDKFZ 2023-08-30 11:55:56 +02:00
42300e923f Corrected URL Croft 2023-08-30 11:53:06 +02:00
6b025a8f6a Merge branch 'main' into main_tls_docu Croft 2023-08-30 11:52:13 +02:00
4ab1ff2008 Merge pull request #115 from samply/main_zdenkas_directory_documentation DavidCroftDKFZ 2023-08-30 11:28:59 +02:00
dddbf0efd0 Zdenkas updates for Directory and Collection usage Croft 2023-08-29 10:41:25 +02:00
f4ff6f418a Merge pull request #113 from samply/main_documentation_git_docker_proxy DavidCroftDKFZ 2023-08-29 10:24:05 +02:00
53c9580a46 Merge pull request #114 from samply/fix/dnpm-connect-env Pierre Delpy 2023-08-29 07:47:14 +02:00
169ce2436f fix dnpm connect env, from bool to string Tobias Kussel 2023-08-28 17:21:52 +00:00
66deff38a2 Corrected Docker link Croft 2023-08-28 10:24:18 +02:00
eeba6bce39 Added info about git and Docker proxy to documenation. Croft 2023-08-28 10:15:19 +02:00
09b02fe4b6 Merge pull request #112 from samply/fix/dnpm-connect-tag Tobias Kussel 2023-08-24 19:23:50 +02:00
bba8a03f9f Use beam-connect:develop for DNPM Tobias Kussel 2023-08-24 12:22:43 +00:00
86239a80e7 Merge pull request #107 from samply/feature/testable-bridgehead Jan 2023-08-22 10:22:21 +02:00
6cfa745385 Remove -it from docker run janskiba 2023-08-17 11:21:20 +00:00
cfb1bed7b4 Adapt to changes in main janskiba 2023-08-17 11:20:38 +00:00
408483fc54 commit to trigger the switch test-switch-branch Torben Brenner 2023-08-16 09:59:15 +02:00
e66b84b590 refactor: switch sites to main Torben Brenner 2023-08-16 09:48:42 +02:00
ff942ac735 Merge pull request #109 from samply/dktk-migration patrickskowronekdkfz 2023-08-16 09:48:12 +02:00
8d83fa1781 Merge pull request #110 from samply/dktk-migration2 patrickskowronekdkfz 2023-08-16 09:41:33 +02:00
fa973e2cfa fix: path in mtba setup Patrick Skowronek 2023-08-16 09:37:30 +02:00
bbda5e917f Cleanup Patrick Skowronek 2023-08-16 09:35:36 +02:00
e69c0ec306 Merge branch 'main' into dktk-migration Torben Brenner 2023-08-16 09:14:04 +02:00
6af6dae6b6 Merge pull request #108 from samply/feature/custom-basic-auth patrickskowronekdkfz 2023-08-15 15:50:35 +02:00
d2e4fc3ea3 Merge pull request #105 from samply/feature/custom-basic-auth Pierre Delpy 2023-08-15 15:44:43 +02:00
af25df79e3 refactor addUser to adduser - lowercase p.delpy@dkfz-heidelberg.de 2023-08-15 15:42:42 +02:00
b58348328c fix nngm migration p.delpy@dkfz-heidelberg.de 2023-08-15 15:34:49 +02:00
829102f23e Merge branch 'main' into feature/custom-basic-auth Pierre Delpy 2023-08-15 14:24:19 +02:00
4754eb282b add migration for old credentials p.delpy@dkfz-heidelberg.de 2023-08-15 13:55:07 +02:00
705fbeaf97 Added advice for finding PEM files Croft 2023-08-14 13:18:42 +02:00
2c7de6c8b4 refactor strange formatting Pierre Delpy 2023-08-09 09:24:23 +02:00
3f43c32bd2 refactor addUser code p.delpy@dkfz-heidelberg.de 2023-08-09 09:10:20 +02:00
7e6c310148 Merge pull request #104 from samply/bbmri-combined Martin Lablans 2023-08-09 08:42:10 +02:00
dc0fc286b1 add generic bash function addBasicAuthUser p.delpy@dkfz-heidelberg.de 2023-07-27 15:38:29 +02:00
eeacf6cc11 Merge pull request #103 from samply/prevent-creation-of-many-anonymous-volumes Martin Lablans 2023-08-07 15:40:27 +02:00
54d83736c3 Move BBMRI-ERIC, GBN to modules Martin Lablans 2023-08-07 13:00:37 +02:00
b32a19a7b5 Make Directory Sync a module Martin Lablans 2023-08-07 13:00:24 +02:00
acc1e2361a Prevent creation of many anonymous volumes Martin Lablans 2023-08-04 17:20:46 +02:00
6ccf9b2a70 Merge pull request #64 from samply/automate Martin Lablans 2023-08-01 10:54:56 +02:00
8ff5405b18 Merge pull request #99 from samply/main_firewall_exceptions Martin Lablans 2023-08-01 10:34:12 +02:00
e775ec5834 Update README.md Martin Lablans 2023-08-01 10:34:06 +02:00
317e7bc017 Merge pull request #102 from samply/fix/time-check Martin Lablans 2023-08-01 10:30:59 +02:00
7093166a53 fix: make the check case insensitive Torben Brenner 2023-08-01 10:25:23 +02:00