bridgehead

Commit Graph

Select branches

Hide Pull Requests

Threated-patch-1

bugfix/test-old-blaze

develop

dnpm-etl-rewrite

documentation/blaze_resources

documentation/faq

ehds2

ehds2_develop

feat/blaze-frontend

feat/cBioPortal

feat/central-rstudio

feat/dnpm-dip

feat/routine-connector-minor-fixes

feature/accessTokenFromConfiguration

feature/add-pscc

feature/add-qb-to-cce

feature/addExporterAndTeilerToEric

feature/auto-pr

feature/cBioPortal

feature/cbioportal-datashield

feature/component-moniotring

feature/dnpm-extra-broker

feature/externalize-versions

feature/feedback-agent

feature/nngm-rest

feature/opal

feature/opal-client-for-new-token-manager

feature/qr-basic-auth

feature/snap

fix/kr-deactivate-landingpage

hotfix/fix-obds2fhir-image

main

metadata_fb

ovis

pr-secret-sync-gitlab-bbmri

pro/lemedart

qr_bbmri

refactor/datashield-auth-config

refactor/independent-modules

refactor/logging

revert-223-feat/add-dkfz-hector-ki-project

set_env_variables_needed_for_fhir2sql

test-switch-branch

test/airgapped-blaze

test/exporter-without-python

test/onkofdz

torbrenner-patch-1

#1

#10

#100

#101

#102

#103

#104

#105

#106

#107

#108

#109

#11

#110

#111

#112

#113

#114

#115

#116

#117

#118

#118

#119

#12

#120

#121

#122

#123

#124

#125

#126

#127

#128

#129

#13

#130

#131

#132

#133

#134

#136

#137

#138

#139

#14

#140

#141

#142

#143

#144

#145

#146

#147

#148

#149

#15

#150

#151

#152

#153

#154

#155

#156

#157

#158

#159

#16

#160

#161

#162

#163

#164

#165

#17

#175

#176

#177

#178

#179

#18

#180

#181

#182

#183

#184

#185

#186

#187

#188

#189

#19

#190

#191

#192

#193

#194

#195

#196

#197

#198

#199

#2

#20

#200

#201

#202

#203

#204

#205

#206

#207

#208

#209

#21

#210

#211

#212

#213

#214

#215

#216

#217

#218

#219

#22

#220

#221

#222

#223

#224

#225

#226

#227

#228

#229

#23

#230

#232

#233

#234

#235

#235

#236

#237

#238

#239

#239

#24

#240

#241

#242

#243

#243

#244

#245

#246

#247

#248

#249

#25

#250

#251

#252

#253

#254

#255

#255

#256

#257

#258

#259

#26

#260

#261

#262

#264

#265

#266

#267

#268

#269

#27

#270

#271

#272

#273

#274

#275

#276

#277

#278

#279

#28

#280

#281

#282

#283

#284

#285

#286

#287

#288

#288

#289

#29

#290

#291

#292

#293

#294

#295

#3

#30

#31

#32

#33

#34

#35

#36

#37

#38

#39

#4

#40

#41

#42

#43

#44

#45

#46

#47

#48

#49

#5

#51

#52

#53

#54

#55

#56

#57

#58

#59

#6

#60

#61

#62

#63

#64

#65

#66

#67

#68

#69

#7

#70

#71

#72

#73

#74

#75

#76

#77

#78

#79

#8

#80

#81

#82

#83

#84

#85

#86

#87

#88

#89

#9

#90

#91

#92

#93

#94

#95

#96

#97

#98

#99

05429b065d Add original Keycloak config juarez 2023-02-14 15:46:57 +0100
29d51e33c9 update keykloak config p.delpy@dkfz-heidelberg.de 2023-02-20 14:49:45 +0100
6caebc2e15 beautiful config p.delpy@dkfz-heidelberg.de 2023-02-14 10:20:19 +0100
9f5c30909b Rename teiler to exporter (bugfix) juarez 2023-02-13 15:35:35 +0100
bb45a8c7bc Rename teiler to exporter juarez 2023-02-13 15:29:45 +0100
3d513d0f60 Configure login extern URLs juarez 2023-02-13 10:23:14 +0100
6496b36d99 Bugfix: services in teiler-ui-compose.yml juarez 2023-02-10 16:04:42 +0100
73ed709a44 Change images of dktk-teiler and dktk-keycloak juarez 2023-02-10 15:47:19 +0100
7405e53935 Add nngm and exliquid modules juarez 2023-02-10 13:11:50 +0100
3a20460275 Add Teiler UI and Teiler module juarez 2023-02-10 12:41:26 +0100
60b2bddf15

Merge pull request #146 from samply/fix/updates Martin Lablans 2024-02-14 16:37:28 +0100
d8da5da7eb

Merge pull request #150 from samply/feature/bridgehead-logs Martin Lablans 2024-02-14 16:25:41 +0100
16fc40f8ae feat: Add `bridgehead logs` command janskiba 2024-02-14 14:28:16 +0000
99956f3477 Added instructions to get latest TransFAIR Croft 2024-02-14 13:10:07 +0100
7837d3b542 Make config consistent across projects feature/component-moniotring Martin Lablans 2024-02-14 11:50:31 +0100
d73e6ee7a3 Merge branch 'ehds2' of https://github.com/samply/bridgehead into ehds2 Croft 2024-02-14 11:18:37 +0100
b6bfaba855 Removed unnecessary chown Croft 2024-02-14 11:17:28 +0100
5bd9baaff7 Corrected things that led to errors during install Croft 2024-02-14 11:16:39 +0100
a629d87a5f Inserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right urlInserted right url Patrick Skowronek 2024-02-14 10:19:19 +0100
d832cfdd43

Use harbor images Jan 2024-02-14 10:08:34 +0100
5ca134c35d Changed: image used for cbioportal and teiler backend feature/cbioportal-datashield MuhannadBaraghith 2024-02-05 14:49:24 +0100
c565d14ee4 Changed: - used image for cbioportal in cbioportal-compose to the Harbor image MuhannadBaraghith 2024-01-24 11:09:27 +0100
a9c09c0d05 Added: cBioPortal juarez 2024-01-17 17:12:17 +0100
2f663c45e8 Add `dsCCPhos` janskiba 2024-01-22 13:47:25 +0000
ebbe64abee Only sync secrets on startup janskiba 2024-01-22 08:25:57 +0000
26c9e1286d fix: Use strong pw for opal janskiba 2023-12-22 10:54:13 +0000
92984d24f3 fix: Generate stable passwords janskiba 2023-12-22 10:41:07 +0000
abedfdaf64 Added: volume for opal metadata db (III) juarez 2023-12-21 13:47:00 +0100
c751b72e0e Added: volume for opal metadata db (II) juarez 2023-12-21 13:40:32 +0100
65eee84a4f Added: volume for opal metadata db juarez 2023-12-21 09:35:38 +0100
c0f497255c Add test sites janskiba 2023-12-21 08:29:04 +0000
56c2955b5d Add central token manager beam id janskiba 2023-12-21 08:28:47 +0000
0ced9b0e4e Added: allowed-groups juarez 2023-12-14 18:34:30 +0100
bb23d6f25b Added: Enable MTBA and Enable DataSHIELD to Teiler Backend juarez 2023-12-14 14:04:42 +0100
8ac4e36ac1 Default values for MTBA juarez 2023-12-14 00:08:41 +0100
4e809f66cb Use develop version of mtba juarez 2023-12-13 23:14:34 +0100
ca9f88421c Use last version of mtba juarez 2023-12-13 23:11:23 +0100
8579bc879f Only users of group DataSHIELD can use R-Studio juarez 2023-12-13 22:57:37 +0100
18dda72e84 teiler-orchestrator and teiler-dashboard latest juarez 2023-12-13 20:14:56 +0100
164d1a66fb fix: undo permission changes on startup Jan 2023-12-13 17:54:54 +0100
ca7772421b fix: only change permissions on related files Jan 2023-12-13 17:39:35 +0100
2ec44c9d48 fix: opal ssl cert janskiba 2023-12-13 14:07:11 +0000
9231c99141 fix: chown syntax janskiba 2023-12-13 13:22:06 +0000
2542c478c1 fix: beam connect site renaming janskiba 2023-12-13 13:17:16 +0000
7fb27efae3 fix: Change permissions on new bridgehead dirs janskiba 2023-12-13 12:24:51 +0000
efd26aa761 fix: generate the right beam connect mappings janskiba 2023-12-13 11:01:25 +0000
cd36ab455b feat: Add token-manager to beam janskiba 2023-12-12 09:53:14 +0000
e9eccd5cab fix: Restrict rstudio network access janskiba 2023-12-08 11:50:06 +0000
381633d4a0 move OAUTH2_SECRET juarez 2023-12-01 09:16:29 +0100
30760075a6 add default template-ids of exporter and reporter juarez 2023-12-01 08:58:36 +0100
1299ee2ab4 mtba develop juarez 2023-11-30 17:58:50 +0100
fe56cbbc19 add /oauth2/callback and /mtba to Keycloak private client juarez 2023-11-30 17:39:01 +0100
bd784e703a mtba latest juarez 2023-11-30 17:32:51 +0100
109426cf43 Use develop branch for mtba juarez 2023-11-30 17:25:32 +0100
40d6c7cae5 fix: public client generation janskiba 2023-11-30 14:05:07 +0000
a3c7a002fd Better redirect url handeling janskiba 2023-11-30 13:46:08 +0000
91903fae24 Add oauth2_proxy juarez 2023-11-29 09:29:18 +0100
ea0435bee3 Add comment about PASSWORD and DISABLE_AUTH in R-Studio juarez 2023-11-28 16:51:30 +0100
ad1b00d16e Add proxy to R-Studio for loading R packages juarez 2023-11-28 16:50:36 +0100
e696d3b5dd Add Keycloak to MTBA juarez 2023-11-27 19:39:16 +0100
b683d07f48 Add keycloak configuration juarez 2023-11-24 08:52:54 +0100
eea53cd877 Add R-Studio Admin Password juarez 2023-11-23 17:28:39 +0100
b0ced71197 Add generate_password function juarez 2023-11-23 15:54:44 +0100
185143c084 Bugfix: Export /var/cache/bridgehead/secrets as environment variables juarez 2023-11-23 14:33:28 +0100
0a1070c3a5 Account for ip address host values janskiba 2023-11-23 10:28:43 +0000
8505057863 Remove port handeling when generating redirect url janskiba 2023-11-23 09:58:34 +0000
72d37c87f9 Add function generate_redirect_urls juarez 2023-11-23 10:38:50 +0100
8aa851bfe4 Update oidc provider to new url janskiba 2023-11-21 10:39:17 +0000
67831ba57b Generate addtional redirect url janskiba 2023-11-20 11:34:18 +0000
0545189cec Integrate central Keycloak in Teiler juarez 2023-11-17 10:27:12 +0100
faf46f9fea Make sure path exists Jan Skiba 2023-11-16 14:24:41 +0100
c8e215199c Setup hostname earlier Jan Skiba 2023-11-16 14:21:19 +0100
c2b994e0d1 Update to new secret-sync semantics janskiba 2023-11-13 16:22:23 +0000
4cd66f6689 Add secret sync to the bridgehead janskiba 2023-11-07 14:55:26 +0000
e99913cdc3 Bugfix: Add version in every docker compose file juarez 2023-09-11 13:27:08 +0200
afacdae20e Remove unnecessary version of docker-compose.override files juarez 2023-08-03 10:35:41 +0200
33d955f17d Bugfix: Add version in every docker compose file juarez 2023-09-11 13:27:08 +0200
c0ff03da6b Remove unnecessary version of docker-compose.override files juarez 2023-08-03 10:35:41 +0200
6582db0523 MTBA 1.0.0 juarez 2023-11-29 12:43:58 +0100
27948c2a64 Remove nngmSetup in vars juarez 2023-11-03 17:03:15 +0100
c8e7cd5f25 Prevent creation of volumes Martin Lablans 2023-10-25 12:33:56 +0200
f2c55ade84 Use Bridgehead's internal http proxy lablans 2023-10-24 08:33:15 +0000
b20758bc3d Make Opal use proxy server Martin Lablans 2023-10-24 09:25:36 +0200
8d22ea2c19 Use newest version of `beam-connect` janskiba 2023-10-23 12:33:56 +0000
9eaaeb5064 Update export template script: FHIR_QUERY to FHIR_PATH juarez 2023-10-10 15:48:11 +0200
c9b19a9368 /var/cache for mtba juarez 2023-09-26 07:45:51 +0200
b0b599c96b Add docu about login in teiler juarez 2023-09-22 17:09:47 +0200
b7c6b15425 Bugfix: datashield local.json as array juarez 2023-09-22 15:36:21 +0200
8e181a85c2 Prevent anonymous volume creation Martin Lablans 2023-09-22 10:24:10 +0200
b9dbfd4803 Bugfix: Exporter and Reporter /var/cache volumes juarez 2023-09-19 16:39:32 +0200
3389145c1d Postgres 15.4 in datashield, exporter and login juarez 2023-09-19 14:21:15 +0200
7d8b83b10c Update ccp/modules/mtba.md djuarezgf 2023-09-18 12:04:56 +0200
d799554f86 Bugfix: Add version of docker-compose juarez 2023-09-18 12:02:36 +0200
4a4a1d76a7 Make sure copy works and the correct owner is set janskiba 2023-09-15 14:09:06 +0000
785dff29bf Add all sites janskiba 2023-09-15 11:17:07 +0000
1f9733aa4d Auto generate mappings janskiba 2023-09-15 09:45:28 +0000
c5578f81ee Add ccp to /var/cache/bridgehead/* volumes juarez 2023-09-15 15:16:46 +0200
fa5459c4dd Rewrite comments lablans 2023-09-15 08:24:44 +0000
31320a856c Move exporter db to /var/cache/bridgehead lablans 2023-09-15 08:20:24 +0000
a340b959c2 Exporter cache lablans 2023-09-15 08:19:10 +0000