Commit Graph

  • bb81617873 Replaced tabs with spaces Gerhard Salvini 2024-07-17 09:34:46 +0200
  • 353fc010cb Cherry picked the stop/start files from ehds2_develop branch DavidCroftDKFZ 2024-07-17 09:27:32 +0200
  • c15c3962a7 Switched to bridgehead user for git to avoid auth problems DavidCroftDKFZ 2024-07-17 09:24:37 +0200
  • e0fe39ab83 Perform git actions with the bridgehead user, to prevent authentication issues DavidCroftDKFZ 2024-07-16 16:58:13 +0200
  • cce76bab84 Updated README for the new run/stop scripts DavidCroftDKFZ 2024-07-16 16:55:08 +0200
  • c27536b566 Cherry picked from ehds2 and updated data upload for new scripts Gerhard Salvini 2024-07-16 16:47:57 +0200
  • f213e6909a Started adding the new scripts to the README Gerhard Salvini 2024-07-16 16:17:30 +0200
  • 6887264a5b Added infrastructure for running ECDC-Bridgehead under systemctl Gerhard Salvini 2024-07-16 16:08:08 +0200
  • 5b2c3d7725 Using bridgehead user for performing git pull Gerhard Salvini 2024-07-16 16:06:10 +0200
  • a92b2eff76
    Merge pull request #193 from samply/Fix-patientlisturl-in-obds2fhir-rest-compose.yml Tobias Kussel 2024-07-16 10:59:53 +0200
  • b36c9ae03e
    Fix patientlisturl in obds2fhir-rest-compose.yml Pierre Delpy 2024-07-16 10:49:23 +0200
  • 16629f3e45
    Merge pull request #192 from samply/hotfix/idmanagementFlag Torben Brenner 2024-07-16 10:20:15 +0200
  • 013d6d219b Provided more detailed instructions on uploading data to a Bridgehead DavidCroftDKFZ 2024-07-15 10:28:21 +0200
  • cc228e20d9 Reordered the Bridgehead restart instructions DavidCroftDKFZ 2024-07-15 09:20:18 +0200
  • 153f654397 Deal with multiple data files, update repos DavidCroftDKFZ 2024-07-12 11:07:06 +0200
  • a8a15aaad8 Update repos on start DavidCroftDKFZ 2024-07-12 09:04:08 +0200
  • 2e8b1dc96c Deal with multiple data files Bridgehead User 2024-07-12 08:45:17 +0200
  • 105495d6cd Made compatible with ehds2 branch Gerhard Salvini 2024-07-10 14:51:16 +0200
  • 93e73838c6 Made comments compatible with ehds2 branch DavidCroftDKFZ 2024-07-10 14:39:46 +0200
  • 70aca8e99c Wait longer for Blaze to start DavidCroftDKFZ 2024-07-10 14:34:14 +0200
  • f925c27791 Suggested more robust Bridgehead start DavidCroftDKFZ 2024-07-10 14:26:46 +0200
  • 9e72b04824 Added instructions to stop and start Bridgehead DavidCroftDKFZ 2024-07-10 14:25:21 +0200
  • 350a4c84af Added extra detail relating to EHDS2 DavidCroftDKFZ 2024-07-10 14:20:40 +0200
  • fbe68bc778 Adding more detail to EHDS2-specific installation tasks DavidCroftDKFZ 2024-07-10 14:18:03 +0200
  • 17f372b06c Implement a gentler way of handling clock skew Gerhard Salvini 2024-07-10 14:02:04 +0200
  • 91dc31d039 fix: use correct ID management flag for oBDS2FHIR Pierre Delpy 2024-07-08 13:54:42 +0200
  • 7c54b6bb08
    Merge pull request #191 from samply/fix/oauth-redirect patrickskowronekdkfz 2024-07-03 15:10:28 +0200
  • 9e4bc214ce fix: Fix traefik label for oauth2 redirect janskiba 2024-07-03 13:01:02 +0000
  • b52931e46c Pinned Blaze version DavidCroftDKFZ 2024-07-02 14:11:34 +0200
  • a250d52998 Pinned Blaze version, increased Focus retry count Gerhard Salvini 2024-07-02 14:05:38 +0200
  • 94a38155b5
    Merge pull request #190 from samply/feature/obds-fhir patrickskowronekdkfz 2024-07-02 09:19:26 +0200
  • 2ee8e0185a feature: upgrade to oBDS2FHIR Pierre Delpy 2024-07-01 12:46:33 +0200
  • f28e3c2cd2 Remove unnecessary default values Martin Lablans 2024-07-01 15:19:44 +0200
  • 91ff51304b Add new dashboard backend Martin Lablans 2024-07-01 14:54:04 +0200
  • e28b125b93
    Merge pull request #189 from samply/fix/updateBlazeVersion Torben Brenner 2024-06-28 14:31:56 +0200
  • f7751b9d92 fix: set blaze to version 0.28 Torben Brenner 2024-06-28 14:29:56 +0200
  • 4da71353cc
    Merge pull request #188 from samply/fix/blazeDktkNotRunning Torben Brenner 2024-06-28 13:59:20 +0200
  • 0db7df1440
    Update docker-compose.yml Torben Brenner 2024-06-28 13:57:30 +0200
  • e309dc495a Improved docker-compose for transFAIR Gerhard Salvini 2024-06-18 15:28:37 +0200
  • 373ba7a543
    Merge pull request #187 from samply/feat/focus-retry Enola Knezevic 2024-06-14 17:00:13 +0200
  • e72c996952 feat: allow setting focus retry count and increase default janskiba 2024-06-13 07:29:54 +0000
  • eb0f392e3c Croatia is having problems with a slow starting Blaze, increase Focus retry count DavidCroftDKFZ 2024-06-13 09:25:57 +0200
  • 502eef0cc8 feat: adapt secret sync for bbmri qr_bbmri janskiba 2024-06-12 08:36:28 +0000
  • 4fc53c00bf Fix typo Martin Lablans 2024-06-11 08:41:35 +0200
  • a738f1468f Fixed bug in CVS test logic Croft 2024-06-07 16:08:16 +0200
  • 647aa05c73
    Merge pull request #186 from samply/feat/journal-logs patrickskowronekdkfz 2024-06-05 14:58:35 +0200
  • ec9df1feec
    Update README.md Jan 2024-06-05 14:57:42 +0200
  • a018104e0b feat: Add logs command for journalctl and rename old one to docker-logs janskiba 2024-06-05 12:35:44 +0000
  • 0ca5ad76f1 Changed: to use the generated passwords from cbioportal-setup.sh. Removed: local database files (they have been added in the database image named bridgehead-cbioportal-database) feature/cBioPortal root 2024-06-04 12:11:14 +0200
  • 667048d49f WIP blaze frontend feat/blaze-frontend janskiba 2024-05-28 14:14:36 +0200
  • 96c1b8ede5 chore: update datashield beam-connect mappings feat/central-rstudio janskiba 2024-05-23 09:55:22 +0200
  • eac9374815 feat: Add file-dispatcher to exporter compose janskiba 2024-05-23 09:38:37 +0200
  • 68f06c0d9d
    Merge pull request #185 from samply/update/focus_main patrickskowronekdkfz 2024-05-21 16:21:22 +0200
  • 033da484d1 switch focus of ccp to tag Patrick Skowronek 2024-05-21 16:16:40 +0200
  • aa122d0bff Shortened national node names in config Croft 2024-05-17 11:44:37 +0200
  • ec4e91fade Corrected data target directory Croft 2024-05-17 09:59:33 +0200
  • c5f82bf93c Removed outdated steps relating to transFAIR Croft 2024-05-17 09:57:31 +0200
  • eb563113e0 Merge branch 'ehds2' of https://github.com/samply/bridgehead into ehds2 Croft 2024-05-17 09:50:59 +0200
  • a10d0f9605 Added instructions for starting/stopping ECDC Bridgeheads Croft 2024-05-17 09:49:39 +0200
  • e5efd42861 fix: Disable landing page for now pro/lemedart janskiba 2024-05-13 13:56:58 +0000
  • f139965460 feat: Add root cert janskiba 2024-05-13 12:02:55 +0000
  • 0b42ff3e22 feat: leme setup janskiba 2024-05-13 11:27:26 +0000
  • 825f1a0b6c Added lemedart Patrick Skowronek 2024-05-08 14:03:11 +0200
  • c4b7620fd6 BBMRI Teiler default templates: bbmri (exporter) and bbmri-qb (reporter) feature/feedback-agent d014n 2024-04-30 14:23:38 +0200
  • 6a21a5b641 Move exporter and teiler to bbmri/modules d014n 2024-04-30 14:16:59 +0200
  • c04ffc5f33 Merge branch 'main' into qr_bbmri d014n 2024-04-30 14:04:34 +0200
  • 714e46f082
    Merge pull request #184 from samply/refactor/mainzelliste-return-ssl patrickskowronekdkfz 2024-04-29 08:33:00 +0200
  • 29c2b5ef69 refactor: Ensure Mainzelliste returns SSL in Responses Torben Brenner 2024-04-26 11:29:38 +0200
  • 02ee84df2c
    Merge pull request #183 from samply/fix/minimal-checks Jan 2024-04-26 09:04:40 +0200
  • 994b0a4124 remove time Patrick Skowronek 2024-04-25 14:03:39 +0200
  • b1bdf48e55 changes for the bbmri-qr d014n 2024-04-18 13:50:14 +0200
  • 433edde75a
    Merge pull request #182 from samply/revert-177-maintenance/gbn patrickskowronekdkfz 2024-04-18 11:37:11 +0200
  • fe3fc6204a
    Revert "GBN maintenance mode" patrickskowronekdkfz 2024-04-18 11:01:04 +0200
  • 4b3b13b101
    Merge pull request #177 from samply/maintenance/gbn patrickskowronekdkfz 2024-04-17 20:47:35 +0200
  • 8b33912fee feat: Move to central rstudio janskiba 2024-04-17 14:25:59 +0200
  • 1afbf88a76 fix: use only bbmri broker Patrick Skowronek 2024-04-16 09:23:42 +0200
  • 7d5f771181
    Merge pull request #181 from samply/fix/secret-sync-args patrickskowronekdkfz 2024-04-16 09:15:53 +0200
  • f9a9baf13d fix: Generate public oidc client when there is no private client janskiba 2024-04-15 15:53:27 +0200
  • d4259406a9
    Merge pull request #180 from samply/fix/secret-sync Torben Brenner 2024-04-15 13:18:38 +0200
  • 0745eab7b5 fix: Kill stale secret-sync instances janskiba 2024-04-15 13:12:17 +0200
  • b404277083
    Merge pull request #179 from samply/update/focus_0_4_4 patrickskowronekdkfz 2024-04-15 11:02:31 +0200
  • b767b3230f update: dktk focus to 0.4.4 Patrick Skowronek 2024-04-15 10:13:16 +0200
  • dd653a7871
    Merge pull request #178 from samply/PierreDelpy-patch-1 Torben Brenner 2024-04-15 09:09:47 +0200
  • 7418861e8c
    fix typo functions.sh Pierre Delpy 2024-04-15 09:08:56 +0200
  • 94b2c29bc7 GBN maintenance mode Patrick Skowronek 2024-04-15 08:31:57 +0200
  • ac3ff314ff
    Merge pull request #176 from samply/fix/bash-math patrickskowronekdkfz 2024-04-03 12:59:52 +0200
  • 2831fb9a22 fix: Make math work on bash 4.2 janskiba 2024-04-02 14:36:23 +0200
  • 593f93fffc Turned off obfuscation, because ECDC does not want this feature Gerhard Salvini 2024-03-28 11:06:10 +0100
  • 53cdd49fd7 Improved docs, turned off obfuscation Gerhard Salvini 2024-03-28 11:04:08 +0100
  • b2b9865e8c Improved documentation for EHDS2/ECDC Gerhard Salvini 2024-03-28 09:22:41 +0100
  • 4588960e19 Removed DKFZ URLs and certificates from EHDS2 branch Gerhard Salvini 2024-03-27 16:08:32 +0100
  • 36a97ecc20 Removed ECDC URLs and certificates from dev branch Gerhard Salvini 2024-03-27 16:04:25 +0100
  • 1b82207934 Migrated TransFAIR start logic from launch file to docker-compose Gerhard Salvini 2024-03-26 17:00:42 +0100
  • 7934d912b8
    Merge pull request #175 from samply/update/focus_0_4_2 patrickskowronekdkfz 2024-03-22 14:11:09 +0100
  • 70ad318b28 Update focus to 0.4.2 Patrick Skowronek 2024-03-22 13:59:42 +0100
  • 4880c5cc9b Remove dependancy on local blazectl image Gerhard Salvini 2024-03-20 11:43:43 +0100
  • dceac37810 Removed: using local images for cbioportal and cbioportal-database in cbioportal-compose.yml MuhannadBaraghith 2024-01-22 10:21:19 +0100
  • 229f849ba5 Changed: image name of cbioportal root 2024-01-17 15:46:46 +0100
  • f7a8ee39d8 Changed: used images in cbioportal-database and cbioportal from local images to bridgehead MuhannadBaraghith 2024-01-09 13:54:36 +0100
  • 6d276fc28e Updated cbioportal-compose file root 2023-12-15 13:05:54 +0100