Commit Graph

  • 66d4629978 Integrating cbioportal root 2023-12-15 12:30:14 +0100
  • 9f97792d6a remove unnecessary volumes of cbioportal juarez 2023-12-05 09:37:05 +0100
  • 316398673d Fix environment variables in cbioportal juarez 2023-11-29 15:46:04 +0100
  • 4449beacb5 Integrating cBioPortal MuhannadBaraghith 2023-11-29 10:29:30 +0100
  • 6da143f348
    Merge pull request #164 from samply/feature/datashield patrickskowronekdkfz 2024-03-19 09:55:56 +0100
  • 4fac079aec
    Merge branch 'main' into feature/datashield patrickskowronekdkfz 2024-03-19 09:52:40 +0100
  • ec6f9302a1 Fix spelling of log WARN Tobias Kussel 2024-03-19 08:47:57 +0000
  • 896b24be9b Use bridgehead log functions in datashield setup Tobias Kussel 2024-03-19 08:45:50 +0000
  • b9b44d2530 Using standardized conditions for starting transfair Gerhard Salvini 2024-03-19 09:07:56 +0100
  • adf8e35ba9 Remove empty file (teiler-ui-compose.yml) djuarezgf 2024-03-18 19:22:10 +0100
  • 480bbe04e7 Changed: TEILER_DEFAULT_LANGUAGE djuarezgf 2024-03-18 16:47:40 +0100
  • d8b9498ef9
    Update minimal/docker-compose.yml djuarezgf 2024-03-18 12:45:46 +0100
  • 3180d0fd76 Replace | openssl rsautl -sign with | sha1sum | openssl pkeyutl -sign djuarezgf 2024-03-18 12:44:34 +0100
  • 3a8df378a6
    Update lib/functions.sh djuarezgf 2024-03-18 12:36:09 +0100
  • 8cb33c2ddc Add warning if ENABLE_EXPORTER is not set or set to true djuarezgf 2024-03-18 12:18:19 +0100
  • 591d95e8db Remove empty line djuarezgf 2024-03-18 12:13:09 +0100
  • 349027e969 Rename oauth2_proxy docker service to oauth2-proxy djuarezgf 2024-03-18 12:12:16 +0100
  • ff06782234 Remove todo djuarezgf 2024-03-18 12:04:04 +0100
  • 6969a7a3bc Remove unnecessary comment djuarezgf 2024-03-18 12:02:53 +0100
  • 0d1f425df0 Auto-build focus and transfair Gerhard Salvini 2024-03-18 11:03:50 +0100
  • 8ea7da64b7
    Merge pull request #165 from samply/fix/useCommonLanguage patrickskowronekdkfz 2024-03-15 11:51:37 +0100
  • 6217e28590 fix: use always english output of free command Torben Brenner 2024-03-15 11:48:25 +0100
  • a87e9b9284
    Merge pull request #154 from samply/refactor/blazePerformanceTuning Torben Brenner 2024-03-15 09:55:34 +0100
  • 7a33b54416 Merge branch 'ehds2' of https://github.com/samply/bridgehead into ehds2 Gerhard Salvini 2024-03-15 09:48:46 +0100
  • 40e15f4d84 Added extra stuff for EHDS2 Gerhard Salvini 2024-03-15 09:35:49 +0100
  • 1f17fad366 fix: Dont change ownership of all files under /tmp/bridgehead and /var/cache/bridgehead janskiba 2024-03-14 14:09:21 +0000
  • 5a6322fcaa refactor: Move oauth2 proxy related things to datashield setup janskiba 2024-03-14 11:50:08 +0000
  • f88dfb5654
    Merge pull request #145 from samply/feature/datashield-central-keycloak djuarezgf 2024-03-13 10:34:13 +0100
  • 1a233b81a4
    Merge pull request #163 from samply/refactor/datashield djuarezgf 2024-03-13 10:13:10 +0100
  • e1e523f1ac refactor: tune configuration of blaze according to system memory Torben Brenner 2024-03-11 09:58:30 +0100
  • 7478d804df refactor: Move vars to their setup files janskiba 2024-03-11 10:34:05 +0000
  • 06033c8ea0
    Merge pull request #162 from samply/update/focus_0_4_1 Martin Lablans 2024-03-08 16:26:41 +0100
  • eeb17e7bfe feat: added optional resource cache cap Torben Brenner 2024-03-08 13:33:30 +0100
  • 3223c22ff5
    Merge pull request #161 from samply/fix/minimal-checks Tobias Kussel 2024-03-08 09:20:05 +0100
  • ea6441fbcb Updated ccp focus to 0.4.1 Patrick Skowronek 2024-03-08 08:33:15 +0100
  • 36c5c1a080 Changed dnpm-configuration to allow different broker Tobias Kussel 2024-03-06 13:21:11 +0000
  • 1a928e6701 Included the new functionality into the README Croft 2024-03-06 11:35:17 +0100
  • 8104711075 Allow user to push star model facts to Directory Croft 2024-03-06 11:26:07 +0100
  • b5c35211f6 Dont test clock skew and priv key for minimal bridgeheads Tobias Kussel 2024-03-05 14:58:06 +0000
  • 3777d4bf05 Add default value for BLAZE_MEMORY_CAP Torben Brenner 2024-03-05 10:34:00 +0100
  • 48e198fa0c
    Merge pull request #159 from samply/feat/dnpm-test-data-generation Tobias Kussel 2024-02-29 08:18:13 +0100
  • ad4430e480 Create env to control dnpm synthetic data generation Tobias Kussel 2024-02-28 10:11:03 +0000
  • 7245ddc720
    Merge pull request #158 from samply/main Jan 2024-02-28 11:01:47 +0100
  • 443dcc6ec2
    Merge pull request #157 from samply/fix/set-focus-version Tobias Kussel 2024-02-28 10:56:00 +0100
  • b2c933f5e5 fix: set focus version to 0.4.0 Torben Brenner 2024-02-28 10:52:57 +0100
  • db9692795a fix: Fix if syntrax janskiba 2024-02-21 15:28:51 +0000
  • 74eb86f8af fix: Update permissions on update janskiba 2024-02-21 15:25:02 +0000
  • fb4da54297 chore: Add mannheim to datashield sites janskiba 2024-02-19 08:30:49 +0000
  • 3e44dab9f2 chore: Remame datashield mappings to datashield sites janskiba 2024-02-19 08:26:53 +0000
  • f72e7c7799 Changed: replace keycloak with oidc juarez 2024-02-13 18:54:26 +0100
  • 19d0fefe94 Changed: master realm juarez 2024-02-13 18:49:06 +0100
  • 9a1860ccf9 Removed: / from groups juarez 2024-02-13 15:58:24 +0100
  • 8a197ce5c7 Add oauth2_proxy juarez 2023-11-29 09:29:18 +0100
  • 29d2bc0440 Add Keycloak to MTBA juarez 2023-11-27 19:39:16 +0100
  • 2eb56e66c8 Integrate central Keycloak in Teiler juarez 2023-11-17 10:27:12 +0100
  • ef8866b943 fix: Start oauth proxy after forward_proxy is ready janskiba 2024-02-15 13:13:52 +0000
  • cea577bde5 Removed: login-compose juarez 2024-02-14 21:43:12 +0100
  • 97a558dd46 Removed:Login-compose juarez 2024-02-13 15:18:37 +0100
  • 1995997ac2 fix: Wait for forward proxy to start janskiba 2024-02-08 13:39:17 +0000
  • 64250d9d21 refactor: Use beam proxy directly as proxy janskiba 2024-02-08 13:38:37 +0000
  • f3fa1ce712 fix: secret sync account for minimal override janskiba 2024-02-07 16:05:26 +0000
  • b241feecdb fix: Pull oauth2 proxy from harbor janskiba 2024-02-07 14:08:00 +0000
  • 4a9427a1bd fix: Use forward proxy for secret sync janskiba 2024-02-06 16:18:23 +0000
  • af3e5231d8 Added: Proxy to R-Studio oauth2-proxy juarez 2024-02-06 17:18:10 +0100
  • 51e8888fe1 Use latest jq janskiba 2024-02-06 14:08:11 +0000
  • 32ffb33ab1 fix: Only give writeable dirs the docker role janskiba 2024-02-05 08:31:00 +0000
  • 224c1472b2 fix: Correctly set file permissions janskiba 2024-01-31 14:23:14 +0000
  • 01d3a38e18 refactor: Use jq from docker janskiba 2024-01-31 09:21:19 +0000
  • 92a1f4bb59 Add `dsCCPhos` janskiba 2024-01-22 13:47:25 +0000
  • 4e3cd68922 Only sync secrets on startup janskiba 2024-01-22 08:25:57 +0000
  • c60c9fc4b4 fix: Use strong pw for opal janskiba 2023-12-22 10:54:13 +0000
  • f0a05b12ad fix: Generate stable passwords janskiba 2023-12-22 10:41:07 +0000
  • 935c45b74d Added: volume for opal metadata db (III) juarez 2023-12-21 13:47:00 +0100
  • 01efc6f9b9 Added: volume for opal metadata db (II) juarez 2023-12-21 13:40:32 +0100
  • e54475f704 Added: volume for opal metadata db juarez 2023-12-21 09:35:38 +0100
  • 2f04e51f96 Add test sites janskiba 2023-12-21 08:29:04 +0000
  • d62f5a404b Add central token manager beam id janskiba 2023-12-21 08:28:47 +0000
  • 977ad139f8 Added: allowed-groups juarez 2023-12-14 18:34:30 +0100
  • 643e9e67a6 Added: Enable MTBA and Enable DataSHIELD to Teiler Backend juarez 2023-12-14 14:04:42 +0100
  • 37f100dc01 Default values for MTBA juarez 2023-12-14 00:08:41 +0100
  • 0793ea9fc6 Use develop version of mtba juarez 2023-12-13 23:14:34 +0100
  • 44d7b34834 Use last version of mtba juarez 2023-12-13 23:11:23 +0100
  • f6dac7038f Only users of group DataSHIELD can use R-Studio juarez 2023-12-13 22:57:37 +0100
  • 8e5ddc493c teiler-orchestrator and teiler-dashboard latest juarez 2023-12-13 20:14:56 +0100
  • fa141f8e86 fix: undo permission changes on startup Jan 2023-12-13 17:54:54 +0100
  • 2a024e751d fix: only change permissions on related files Jan 2023-12-13 17:39:35 +0100
  • d3da426610 fix: opal ssl cert janskiba 2023-12-13 14:07:11 +0000
  • b34f4f2a0f fix: chown syntax janskiba 2023-12-13 13:22:06 +0000
  • 1edcdce5c6 fix: beam connect site renaming janskiba 2023-12-13 13:17:16 +0000
  • b73ddc883c fix: Change permissions on new bridgehead dirs janskiba 2023-12-13 12:24:51 +0000
  • 9f31e950a5 fix: generate the right beam connect mappings janskiba 2023-12-13 11:01:25 +0000
  • 371097377a feat: Add token-manager to beam janskiba 2023-12-12 09:53:14 +0000
  • 0a2dbb4b2d fix: Restrict rstudio network access janskiba 2023-12-08 11:50:06 +0000
  • 148e87341f move OAUTH2_SECRET juarez 2023-12-01 09:16:29 +0100
  • 28a612f218 add default template-ids of exporter and reporter juarez 2023-12-01 08:58:36 +0100
  • e411883d18 mtba develop juarez 2023-11-30 17:58:50 +0100
  • 0b2e64a2d5 add /oauth2/callback and /mtba to Keycloak private client juarez 2023-11-30 17:39:01 +0100
  • 25ac4d2590 mtba latest juarez 2023-11-30 17:32:51 +0100
  • f9b26b6958 Use develop branch for mtba juarez 2023-11-30 17:25:32 +0100
  • 5d4d0405ab fix: public client generation janskiba 2023-11-30 14:05:07 +0000