services: mtba: image: docker.verbis.dkfz.de/cache/samply/mtba:1.0.0 container_name: bridgehead-mtba environment: BLAZE_STORE_URL: http://blaze:8080 # NOTE: Aktuell Berechtigungen wie MagicPL!!! # TODO: Add separate ApiKey to MagicPL only for MTBA! ID_MANAGER_API_KEY: ${IDMANAGER_UPLOAD_APIKEY} ID_MANAGER_PSEUDONYM_ID_TYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID ID_MANAGER_URL: http://id-manager:8080/id-manager PATIENT_CSV_FIRST_NAME_HEADER: ${MTBA_PATIENT_CSV_FIRST_NAME_HEADER} PATIENT_CSV_LAST_NAME_HEADER: ${MTBA_PATIENT_CSV_LAST_NAME_HEADER} PATIENT_CSV_GENDER_HEADER: ${MTBA_PATIENT_CSV_GENDER_HEADER} PATIENT_CSV_BIRTHDAY_HEADER: ${MTBA_PATIENT_CSV_BIRTHDAY_HEADER} CBIOPORTAL_URL: http://cbioportal:8080 FILE_CHARSET: ${MTBA_FILE_CHARSET} FILE_END_OF_LINE: ${MTBA_FILE_END_OF_LINE} CSV_DELIMITER: ${MTBA_CSV_DELIMITER} labels: - "traefik.enable=true" - "traefik.http.routers.mtba.rule=PathPrefix(`/`)" - "traefik.http.services.mtba.loadbalancer.server.port=80" - "traefik.http.routers.mtba.tls=true" volumes: - /tmp/bridgehead/mtba/input:/app/input - /tmp/bridgehead/mtba/persist:/app/persist # TODO: Include CBioPortal in Deployment ... # NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted! # TODO: Find a trigger to let mtba signal a restart for CBioPortal volumes: mtba-data: