version: "3.7" services: mtba: image: docker.verbis.dkfz.de/cache/samply/mtba:develop container_name: bridgehead-mtba environment: BLAZE_STORE_URL: http://blaze:8080 # NOTE: Aktuell Berechtigungen wie MagicPL!!! # TODO: Add separate ApiKey to MagicPL only for MTBA! ID_MANAGER_API_KEY: ${IDMANAGER_UPLOAD_APIKEY} ID_MANAGER_PSEUDONYM_ID_TYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID ID_MANAGER_URL: http://id-manager:8080/id-manager PATIENT_CSV_FIRST_NAME_HEADER: ${MTBA_PATIENT_CSV_FIRST_NAME_HEADER:-FIRST_NAME} PATIENT_CSV_LAST_NAME_HEADER: ${MTBA_PATIENT_CSV_LAST_NAME_HEADER:-LAST_NAME} PATIENT_CSV_GENDER_HEADER: ${MTBA_PATIENT_CSV_GENDER_HEADER:-GENDER} PATIENT_CSV_BIRTHDAY_HEADER: ${MTBA_PATIENT_CSV_BIRTHDAY_HEADER:-BIRTHDAY} CBIOPORTAL_URL: http://cbioportal:8080 FILE_CHARSET: ${MTBA_FILE_CHARSET:-UTF-8} FILE_END_OF_LINE: ${MTBA_FILE_END_OF_LINE:-LF} CSV_DELIMITER: ${MTBA_CSV_DELIMITER:-TAB} HTTP_RELATIVE_PATH: "/mtba" OIDC_ADMIN_GROUP: "${OIDC_ADMIN_GROUP}" OIDC_CLIENT_ID: "${OIDC_PRIVATE_CLIENT_ID}" OIDC_CLIENT_SECRET: "${OIDC_CLIENT_SECRET}" OIDC_REALM: "${OIDC_REALM}" OIDC_URL: "${OIDC_URL}" labels: - "traefik.enable=true" - "traefik.http.routers.mtba_ccp.rule=PathPrefix(`/mtba`)" - "traefik.http.services.mtba_ccp.loadbalancer.server.port=8480" - "traefik.http.routers.mtba_ccp.tls=true" volumes: - /var/cache/bridgehead/ccp/mtba/input:/app/input - /var/cache/bridgehead/ccp/mtba/persist:/app/persist # TODO: Include CBioPortal in Deployment ... # NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted! # TODO: Find a trigger to let mtba signal a restart for CBioPortal volumes: mtba-data: