Files
bridgehead/itcc/modules/itcc-omics-ingest.yaml
2026-02-16 18:08:52 +01:00

74 lines
2.1 KiB
YAML

services:
omics-endpoint:
image: ghcr.io/samply/itcc-omics-ingest:deploy
environment:
API_KEY: ${GENERATE_API_KEY}
RUST_LOG: debug
BEAM_ID: "omics-endpoint.${PROXY_ID}"
BEAM_SECRET: "${FOCUS_BEAM_SECRET_SHORT}"
BEAM_URL: http://beam-proxy:8081
ML_URL: http://mainzelliste:8080
BLAZE_URL: http://bridgehead-itcc-blaze:8080/fhir/
DATA_LAKE_ID: "${DATA_LAKE_ID}"
PARTNER_ID: itcc-inform
ML_API_KEY: ${GENERATE_API_KEY}
volumes:
- /var/cache/bridgehead/omics/data:/data/uploads
labels:
- "traefik.http.routers.omics.rule=Host(`${HOST}`) && PathPrefix(`/api/omics`)"
- "traefik.enable=true"
- "traefik.http.services.omics.loadbalancer.server.port=6080"
- "traefik.http.routers.omics.tls=true"
- "traefik.http.middlewares.omics-stripprefix.stripprefix.prefixes=/api"
- "traefik.http.routers.omics.middlewares=omics-stripprefix"
db:
image: postgres:15
container_name: db
restart: unless-stopped
environment:
POSTGRES_DB: mainzelliste
POSTGRES_USER: ${ML_DB_USER}
POSTGRES_PASSWORD: ${PATIENTLIST_POSTGRES_PASSWORD}
ports:
- "5432:5432"
volumes:
- db_data:/var/lib/postgresql/data
mainzelliste:
image: medicalinformatics/mainzelliste:latest
container_name: mainzelliste
restart: unless-stopped
depends_on:
- db
ports:
- 7887:8080
environment:
ML_API_KEY: ${GENERATE_API_KEY}
ML_DB_HOST: db
ML_DB_PORT: "5432"
ML_DB_NAME: mainzelliste
ML_DB_USER: ${ML_DB_USER}
ML_DB_PASS: ${PATIENTLIST_POSTGRES_PASSWORD}
ML_DB_DRIVER: org.postgresql.Driver
ML_DB_TYPE: postgresql
ML_LOG_LEVEL: INFO
ML_ALLOWEDREMOTEADDRESSES: "0.0.0.0,::1,127.0.0.1,192.168.65.1"
secrets:
- mainzelliste.docker.conf
- source: symmetric_key
target: /etc/resources/keys/symmetric_key.der
volumes:
db_data:
secrets:
mainzelliste.docker.conf:
file: /etc/bridgehead/mainzelliste/mainzelliste.docker.conf
symmetric_key:
file: /etc/bridgehead/mainzelliste/keyset_siv.json