bridgehead/ccp/modules/ovis-compose.yml

version: "3.7"

services:
  mongo:
    image: mongo:latest
    container_name: bridgehead-ccp-ovis-mongo
    restart: always
    command: mongod
    volumes:
      - /var/cache/bridgehead/ccp/ovis/mongo/init/init.js:/docker-entrypoint-initdb.d/init.js:ro

  ovis-backend-data-preprocessing:
    image: docker.verbis.dkfz.de/ovis/ovis-backend-preprocessor:latest
    container_name: bridgehead-ccp-ovis-preprocessing
    restart: on-failure
    user: root
    working_dir: /app
    environment:
      APOLLO_PORT: "4001"
      CREDOS_PORT: "4000"
      HTTP_PROXY: ""
      HTTPS_PROXY: ""
      NO_PROXY: ""
      http_proxy: ""
      https_proxy: ""
      no_proxy: ""
      CORS_ORIGIN: "*"
      DB: onc_test
      ADRESS: mongodb://mongo:27017
      MONGO_VER: latest
      OVIS_PREPROC_DECEASED_KEYWORDS: '["verstorben","dead","deceased","not alive","gestorben"]'
      OVIS_PREPROC_REZIDIV_PREFIXES: '["Rezidiv"]'
      OVIS_PREPROC_REZIDIV_CANONICAL: Rezidiv
      OVIS_PREPROC_REZIDIV_LYMPH_STATES: '["Rezidiv","Neu"]'
      OVIS_PREPROC_PROGRESS_LABELS: '["Progression","Divergentes Geschehen","Rezidiv"]'
      OVIS_PREPROC_COMPLETE_REMISSION_LABELS: '["Vollremission / Tumorfrei (complete remission)"]'
      OVIS_PREPROC_RCLASS_SUCCESS: '["R0"]'
      OVIS_PREPROC_LOCAL_RSTATE_SUCCESS: '["R0"]'
      OVIS_PREPROC_METASTASIS_PREFIXES: '["Rezidiv","Neu"]'
      OVIS_PREPROC_METASTASIS_SPREAD_VALUES: '["Neu","Rezidiv","Tumornachweis"]'
      OVIS_PREPROC_METASTASIS_STRAT_SYNCHRON: Synchrone Metastasierung
      OVIS_PREPROC_METASTASIS_STRAT_NONE: keine synchrone Metastasierung
      OVIS_PREPROC_NULL_STUDY_PHASES: '["NOPH","KA"]'
      OVIS_PREPROC_PREV_THERAPY_SURGERY: '["operation"]'
      OVIS_PREPROC_PREV_THERAPY_SYSTEMIC: '["systemic"]'
      OVIS_PREPROC_PREV_THERAPY_RADIATION: '["radiation"]'
      OVIS_PREPROC_PREV_CONSULTATION_NUTRITION: '["nutrition"]'
      OVIS_PREPROC_PREV_CONSULTATION_SOCIAL: '["social"]'
      OVIS_PREPROC_PREV_CONSULTATION_PSYCHO: '["psycho"]'
      OVIS_PREPROC_PREV_CONSULTATION_GENETIC: '["genetic"]'
      OVIS_PREPROC_TUMORBOARD_PATTERN_PRAE: prae|prä|pre
      OVIS_PREPROC_TUMORBOARD_PATTERN_POST: post
      OVIS_PREPROC_TUMORBOARD_PATTERN_MTB: mtb
      OVIS_PREPROC_ECOG_PREFIX: ECOG
      OVIS_PREPROC_DISTRESS_TYPE: distress
      OVIS_PREPROC_DISTRESS_POSITIVE_VALUES: '["Positiv"]'
    depends_on:
      - mongo
    volumes:
      - /var/cache/bridgehead/ccp/ovis/shared_data:/app/generated
    healthcheck:
      test: ["CMD-SHELL", "node -e \"require('http').get('http://localhost:9000/health', res => process.exit(res.statusCode===200?0:1)).on('error', () => process.exit(1));\""]
      interval: 10s
      timeout: 5s
      retries: 6
      start_period: 5s
    command: ["node", "./Preprocessing/catalogue-service.mjs"]

  ovis-backend-data-import:
    image: docker.verbis.dkfz.de/ovis/ovis-backend-data-import-ccp:latest
    container_name: bridgehead-ccp-ovis-import
    restart: on-failure
    depends_on:
      blaze:
        condition: service_started
      ovis-backend-data-preprocessing:
        condition: service_healthy
    environment:
      # CCP mode: FHIR source configuration (ignored by DEMO image)
      FHIR_SERVER_URL: http://bridgehead-ccp-blaze:8080/fhir
      FHIR_USERNAME: ""
      FHIR_PASSWORD: ""
      ICD10_FILTER: ""
      # Required for both CCP and DEMO: preprocessor upload endpoint
      OVIS_PREPROCESSOR_URL: http://ovis-backend-data-preprocessing:9000/omock
      # Proxy configuration
      HTTP_PROXY: ""
      HTTPS_PROXY: ""
      NO_PROXY: ""
      http_proxy: ""
      https_proxy: ""
      no_proxy: ""
    volumes:
      - /var/cache/bridgehead/ccp/ovis/shared_data:/shared

  backend:
    image: docker.verbis.dkfz.de/ovis/ovis-backend-apollo:latest
    container_name: bridgehead-ccp-ovis-backend
    restart: always
    user: root
    working_dir: /app
    environment:
      APOLLO_PORT: "4001"
      CREDOS_PORT: "4000"
      CORS_ORIGIN: "*"
      DB: onc_test
      ADRESS: mongodb://mongo:27017
    depends_on:
      - mongo
      - ovis-backend-data-preprocessing
      - ovis-backend-data-import
    healthcheck:
      test: ["CMD-SHELL", "test -d /app/node_modules/mongodb"]
      interval: 10s
      timeout: 5s
      retries: 5
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.ovis-backend.rule=PathPrefix(`/graphql`)"
      - "traefik.http.routers.ovis-backend.tls=true"
      - "traefik.http.routers.ovis-backend.service=ovis-backend"
      - "traefik.http.routers.ovis-backend-ccp.rule=PathPrefix(`/ccp-ovis/graphql`)"
      - "traefik.http.routers.ovis-backend-ccp.tls=true"
      - "traefik.http.middlewares.ovis-backend-ccp-strip.stripprefix.prefixes=/ccp-ovis"
      - "traefik.http.routers.ovis-backend-ccp.middlewares=ovis-backend-ccp-strip"
      - "traefik.http.routers.ovis-backend-ccp.service=ovis-backend"
      - "traefik.http.services.ovis-backend.loadbalancer.server.port=4001"

  frontend:
    image: docker.verbis.dkfz.de/ovis/ovis-frontend:latest
    container_name: bridgehead-ccp-ovis-frontend
    restart: always
    environment:
      OVIS_PUBLIC_BASE_PATH: /ccp-ovis
      PUBLIC_GRAPHQL_URL: https://${HOST}/ccp-ovis/graphql
      PUBLIC_LOGIN_ENABLED: "false"
      PUBLIC_OVIS_IMPORT: ccp
      OVIS_CATALOGUE_UPSTREAM_URL: http://ovis-backend-data-preprocessing:9000/catalogue
      HTTP_PROXY: ""
      HTTPS_PROXY: ""
      NO_PROXY: ""
      http_proxy: ""
      https_proxy: ""
      no_proxy: ""
    depends_on:
      backend:
        condition: service_healthy
    volumes:
      # Dynamic catalogue from preprocessing service
      - /var/cache/bridgehead/ccp/ovis/shared_data:/app/dynamic-catalogue:ro
    labels:
      - "traefik.enable=true"
      - "traefik.http.routers.ovis-frontend-root-compat.tls=true"
      - "traefik.http.routers.ovis-frontend-root-compat.rule=PathRegexp(`^/(icons|svg|fonts|api|downloads|Ovis_logo.svg|patient-cohort|patient-single|filter-edit|survival-definition|footer-version|user-management|tumorboard|tnm|therapy|therapy-systemic|therapy-radiation|therapy-general|therapy-operation|survival|supplementary|study|settings|status|progress|molecular-marker|footer-licensing|footer-privacy|footer-imprint|footer-issues|footer-contact|footer-cite|diagnosis|bio-material|consultation)(/.*)?$`)"
      - "traefik.http.routers.ovis-frontend-root-compat.priority=900"
      - "traefik.http.routers.ovis-frontend-root-compat.middlewares=ovis-frontend-root-compat-redirect"
      - "traefik.http.routers.ovis-frontend-root-compat.service=ovis-frontend"
      - "traefik.http.middlewares.ovis-frontend-root-compat-redirect.redirectregex.regex=^https?://([^/]+)/(.*)$"
      - "traefik.http.middlewares.ovis-frontend-root-compat-redirect.redirectregex.replacement=https://$${1}/ccp-ovis/$${2}"
      - "traefik.http.middlewares.ovis-frontend-root-compat-redirect.redirectregex.permanent=false"
      - "traefik.http.routers.ovis-frontend-ccp-slash.tls=true"
      - "traefik.http.routers.ovis-frontend-ccp-slash.rule=Path(`/ccp-ovis`)"
      - "traefik.http.routers.ovis-frontend-ccp-slash.priority=1000"
      - "traefik.http.routers.ovis-frontend-ccp-slash.middlewares=ovis-frontend-ccp-slash-redirect"
      - "traefik.http.routers.ovis-frontend-ccp-slash.service=ovis-frontend"
      - "traefik.http.middlewares.ovis-frontend-ccp-slash-redirect.redirectregex.regex=^https?://([^/]+)/ccp-ovis$"
      - "traefik.http.middlewares.ovis-frontend-ccp-slash-redirect.redirectregex.replacement=https://$${1}/ccp-ovis/"
      - "traefik.http.middlewares.ovis-frontend-ccp-slash-redirect.redirectregex.permanent=true"
      - "traefik.http.routers.ovis-frontend-ccp.tls=true"
      - "traefik.http.routers.ovis-frontend-ccp.rule=PathPrefix(`/ccp-ovis`)"
      - "traefik.http.middlewares.ovis-frontend-ccp-strip.stripprefix.prefixes=/ccp-ovis"
      - "traefik.http.routers.ovis-frontend-ccp.middlewares=ovis-frontend-ccp-strip"
      - "traefik.http.services.ovis-frontend.loadbalancer.server.port=5173"