mirror of https://github.com/samply/bridgehead.git
61 lines
2.2 KiB
YAML
61 lines
2.2 KiB
YAML
version: "3.7"
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services:
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focus-ehds2:
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#image: docker.verbis.dkfz.de/cache/samply/focus:${FOCUS_TAG}
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image: samply/focus
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container_name: bridgehead-focus-ehds2
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environment:
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API_KEY: ${EHDS2_FOCUS_BEAM_SECRET_SHORT}
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BEAM_APP_ID_LONG: focus.${EHDS2_PROXY_ID}
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PROXY_ID: ${EHDS2_PROXY_ID}
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BLAZE_URL: "http://blaze:8080/fhir/"
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BEAM_PROXY_URL: http://beam-proxy-ehds2:8081
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RETRY_COUNT: ${FOCUS_RETRY_COUNT}
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depends_on:
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- "beam-proxy-ehds2"
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- "blaze"
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beam-proxy-ehds2:
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image: docker.verbis.dkfz.de/cache/samply/beam-proxy:develop
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container_name: bridgehead-beam-proxy-ehds2
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environment:
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BROKER_URL: ${EHDS2_BROKER_URL}
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PROXY_ID: ${EHDS2_PROXY_ID}
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APP_focus_KEY: ${EHDS2_FOCUS_BEAM_SECRET_SHORT}
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PRIVKEY_FILE: /run/secrets/proxy.pem
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ALL_PROXY: http://forward_proxy:3128
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TLS_CA_CERTIFICATES_DIR: /conf/trusted-ca-certs
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ROOTCERT_FILE: /conf/root.crt.pem
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secrets:
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- proxy.pem
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depends_on:
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- "forward_proxy"
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volumes:
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- /etc/bridgehead/trusted-ca-certs:/conf/trusted-ca-certs:ro
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- /srv/docker/bridgehead/bbmri/modules/${EHDS2_ROOT_CERT}.root.crt.pem:/conf/root.crt.pem:ro
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# Convert ECDC CSV file into FHIR and push to Blaze
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transfair:
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container_name: transfair
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image: samply/transfair
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environment:
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FHIR_INPUT_URL: "http://source_blaze:8080/fhir"
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FHIR_OUTPUT_URL: "http://bridgehead-bbmri-blaze:8080/fhir"
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PROFILE: "amr2fhir"
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#WRITE_BUNDLES_TO_FILE: "true"
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AMR_FILE_PATH: "/app/data"
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restart: on-failure
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command: sh -c "sleep 60 && rm -rf /app/test/* && java -jar transFAIR.jar && tail -f /dev/null"
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#command: sh -c "rm -rf /app/test/* && java -jar transFAIR.jar"
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volumes:
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- /home/gerhard/Projects/EHDS2/PrototypeSpring2024/test/:/app/test/
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- /home/gerhard/Projects/EHDS2/PrototypeSpring2024/Data/:/app/data/
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# Report on the data pushed to Blaze by TransFAIR
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blazectl:
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container_name: blazectl
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image: samply/blazectl
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command: sh -c "sleep 300 && echo Source store && blazectl --server http://bridgehead-bbmri-blaze:8080/fhir count-resources && tail -f /dev/null"
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