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The EHDS2 project has initiated a use case for antibiotic resistance under the control of the ECDC. This branch caters for the ECDC requirements. Specifically, it contains the ETL to transform the ECDC CSV format to FHIR, plus additional configuration options that have been packaged into the bbmri project.
49 lines
1.2 KiB
Plaintext
49 lines
1.2 KiB
Plaintext
# Makes sense for all European Biobanks
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: ${ENABLE_ERIC:=true}
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# Makes only sense for German Biobanks
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: ${ENABLE_GBN:=false}
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# Makes only sense for EHDS2 project
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: ${ENABLE_EHDS2:=false}
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FOCUS_RETRY_COUNT=32
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PRIVATEKEYFILENAME=/etc/bridgehead/pki/${SITE_ID}.priv.pem
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for module in $PROJECT/modules/*.sh
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do
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log DEBUG "sourcing $module"
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source $module
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done
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SUPPORT_EMAIL=$ERIC_SUPPORT_EMAIL
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BROKER_URL_FOR_PREREQ="${ERIC_BROKER_URL:-$GBN_BROKER_URL}"
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if [ -n "$GBN_SUPPORT_EMAIL" ]; then
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SUPPORT_EMAIL=$GBN_SUPPORT_EMAIL
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fi
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if [ -n "$EHDS2_SUPPORT_EMAIL" ]; then
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SUPPORT_EMAIL=$EHDS2_SUPPORT_EMAIL
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fi
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function do_enroll {
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COUNT=0
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if [ "$ENABLE_ERIC" == "true" ]; then
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do_enroll_inner $ERIC_PROXY_ID $ERIC_SUPPORT_EMAIL
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COUNT=$((COUNT+1))
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fi
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if [ "$ENABLE_GBN" == "true" ]; then
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do_enroll_inner $GBN_PROXY_ID $GBN_SUPPORT_EMAIL
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COUNT=$((COUNT+1))
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fi
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if [ "$ENABLE_EHDS2" == "true" ]; then
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do_enroll_inner $EHDS2_PROXY_ID $EHDS2_SUPPORT_EMAIL
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COUNT=$((COUNT+1))
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fi
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if [ $COUNT -ge 2 ]; then
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echo
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echo "You just received $COUNT certificate signing requests (CSR). Please send $COUNT e-mails, with 1 CSR each, to the respective e-mail address."
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fi
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}
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