mirror of https://github.com/samply/bridgehead.git
46 lines
1.9 KiB
YAML
46 lines
1.9 KiB
YAML
version: "3.7"
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services:
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mtba:
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#image: docker.verbis.dkfz.de/cache/samply/mtba:latest
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image: docker.verbis.dkfz.de/cache/samply/mtba:develop
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container_name: bridgehead-mtba
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environment:
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BLAZE_STORE_URL: http://blaze:8080
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# NOTE: Aktuell Berechtigungen wie MagicPL!!!
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# TODO: Add separate ApiKey to MagicPL only for MTBA!
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ID_MANAGER_API_KEY: ${IDMANAGER_UPLOAD_APIKEY}
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ID_MANAGER_PSEUDONYM_ID_TYPE: BK_${IDMANAGEMENT_FRIENDLY_ID}_L-ID
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ID_MANAGER_URL: http://id-manager:8080/id-manager
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PATIENT_CSV_FIRST_NAME_HEADER: ${MTBA_PATIENT_CSV_FIRST_NAME_HEADER:-FIRST_NAME}
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PATIENT_CSV_LAST_NAME_HEADER: ${MTBA_PATIENT_CSV_LAST_NAME_HEADER:-LAST_NAME}
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PATIENT_CSV_GENDER_HEADER: ${MTBA_PATIENT_CSV_GENDER_HEADER:-GENDER}
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PATIENT_CSV_BIRTHDAY_HEADER: ${MTBA_PATIENT_CSV_BIRTHDAY_HEADER:-BIRTHDAY}
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CBIOPORTAL_URL: http://cbioportal:8080
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FILE_CHARSET: ${MTBA_FILE_CHARSET:-UTF-8}
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FILE_END_OF_LINE: ${MTBA_FILE_END_OF_LINE:-LF}
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CSV_DELIMITER: ${MTBA_CSV_DELIMITER:-TAB}
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HTTP_RELATIVE_PATH: "/mtba"
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KEYCLOAK_ADMIN_GROUP: "${KEYCLOAK_ADMIN_GROUP}"
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KEYCLOAK_CLIENT_ID: "${KEYCLOAK_PRIVATE_CLIENT_ID}"
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KEYCLOAK_CLIENT_SECRET: "${OIDC_CLIENT_SECRET}"
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KEYCLOAK_REALM: "${KEYCLOAK_REALM}"
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KEYCLOAK_URL: "${KEYCLOAK_URL}"
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labels:
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- "traefik.enable=true"
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- "traefik.http.routers.mtba_ccp.rule=PathPrefix(`/mtba`)"
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- "traefik.http.services.mtba_ccp.loadbalancer.server.port=8480"
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- "traefik.http.routers.mtba_ccp.tls=true"
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volumes:
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- /var/cache/bridgehead/ccp/mtba/input:/app/input
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- /var/cache/bridgehead/ccp/mtba/persist:/app/persist
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# TODO: Include CBioPortal in Deployment ...
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# NOTE: CBioPortal can't load data while the system is running. So after import of data bridgehead needs to be restarted!
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# TODO: Find a trigger to let mtba signal a restart for CBioPortal
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volumes:
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mtba-data:
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