Files
bridgehead/bridgehead
DavidCroftDKFZ 153f654397 Deal with multiple data files, update repos
The check for the presence of data in the TransFAIR updating function
only worked for single CSV files. Tis commit corrects that.

Now also do a git pull on the various repos, to keep things up to date.
2024-07-12 11:07:06 +02:00

157 lines
4.5 KiB
Bash
Executable File

#!/bin/bash -e
baseDir() {
# see https://stackoverflow.com/questions/59895
SOURCE=${BASH_SOURCE[0]}
while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink
DIR=$( cd -P "$( dirname "$SOURCE" )" >/dev/null 2>&1 && pwd )
SOURCE=$(readlink "$SOURCE")
[[ $SOURCE != /* ]] && SOURCE=$DIR/$SOURCE # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located
done
DIR=$( cd -P "$( dirname "$SOURCE" )" >/dev/null 2>&1 && pwd )
echo $DIR
}
BASE=$(baseDir)
cd $BASE
source ./lib/functions.sh
ACTION=$1
export PROJECT=$2
if [[ -z $1 || -z $2 ]]; then
printUsage
exit 1
fi
case "$PROJECT" in
ccp)
#nothing extra to do
;;
bbmri)
#nothing extra to do
;;
minimal)
#nothing extra to do
;;
*)
printUsage
exit 1
;;
esac
loadVars() {
# Load variables from /etc/bridgehead and /srv/docker/bridgehead
set -a
source /etc/bridgehead/$PROJECT.conf || fail_and_report 1 "/etc/bridgehead/$PROJECT.conf not found"
if [ -e /etc/bridgehead/$PROJECT.local.conf ]; then
log INFO "Applying /etc/bridgehead/$PROJECT.local.conf"
source /etc/bridgehead/$PROJECT.local.conf || fail_and_report 1 "Found /etc/bridgehead/$PROJECT.local.conf but failed to import"
fi
fetchVarsFromVaultByFile /etc/bridgehead/$PROJECT.conf || fail_and_report 1 "Unable to fetchVarsFromVaultByFile"
[ -e ./$PROJECT/vars ] && source ./$PROJECT/vars
set +a
OVERRIDE=${OVERRIDE:=""}
# minimal contains shared components, so potential overrides must be applied in every project
if [ -f "minimal/docker-compose.override.yml" ]; then
log INFO "Applying Bridgehead common components override (minimal/docker-compose.override.yml)"
OVERRIDE+=" -f ./minimal/docker-compose.override.yml"
fi
if [ -f "$PROJECT/docker-compose.override.yml" ]; then
log INFO "Applying $PROJECT/docker-compose.override.yml"
OVERRIDE+=" -f ./$PROJECT/docker-compose.override.yml"
fi
detectCompose
setHostname
setupProxy
# Set some project-independent default values
: ${ENVIRONMENT:=production}
case "$ENVIRONMENT" in
"production")
export FOCUS_TAG=main
;;
"test")
export FOCUS_TAG=develop
;;
*)
report_error 7 "Environment \"$ENVIRONMENT\" is unknown. Assuming production. FIX THIS!"
export FOCUS_TAG=main
;;
esac
}
case "$ACTION" in
start)
loadVars
hc_send log "Bridgehead $PROJECT startup: Checking requirements ..."
checkRequirements
# Note: changes to "bridgehead" script will only take effect after next start.
git pull
# Local versions of focus and transfair are needed by EHDS2
clone_focus_if_nonexistent ${BASE}/..
build_focus ${BASE}/..
clone_transfair_if_nonexistent ${BASE}/..
build_transfair ${BASE}/..
# Location for input data and results for EHDS2
mkdir -p ${BASE}/../ecdc/test
mkdir -p ${BASE}/../ecdc/data
chown -R bridgehead ${BASE}/../ecdc
hc_send log "Bridgehead $PROJECT startup: Requirements checked out. Now starting bridgehead ..."
exec $COMPOSE -p $PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE up --abort-on-container-exit
;;
stop)
loadVars
# HACK: This is temporarily to properly shut down false bridgehead instances (bridgehead-ccp instead ccp)
$COMPOSE -p bridgehead-$PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE down
exec $COMPOSE -p $PROJECT -f ./minimal/docker-compose.yml -f ./$PROJECT/docker-compose.yml $OVERRIDE down
;;
is-running)
bk_is_running
exit $?
;;
update)
loadVars
exec ./lib/update-bridgehead.sh $PROJECT
;;
install)
source ./lib/prepare-system.sh NODEV
loadVars
exec ./lib/install-bridgehead.sh $PROJECT
;;
dev-install)
exec ./lib/prepare-system.sh DEV
loadVars
exec ./lib/install-bridgehead.sh $PROJECT
;;
uninstall)
exec ./lib/uninstall-bridgehead.sh $PROJECT
;;
adduser)
loadVars
log "INFO" "Adding encrypted credentials in /etc/bridgehead/$PROJECT.local.conf"
read -p "Please choose the component (LDM_AUTH|NNGM_AUTH) you want to add a user to : " COMPONENT
read -p "Please enter a username: " USER
read -s -p "Please enter a password (will not be echoed): "$'\n' PASSWORD
add_basic_auth_user $USER $PASSWORD $COMPONENT $PROJECT
;;
enroll)
loadVars
do_enroll $PROXY_ID
;;
preRun | preUpdate)
fixPermissions
;;
postRun | postUpdate)
;;
*)
printUsage
exit 1
;;
esac
exit 0