mirror of https://github.com/samply/bridgehead.git
107 lines
3.6 KiB
YAML
107 lines
3.6 KiB
YAML
version: "3.7"
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services:
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############################################ DataSHIELD Client (Rocker R-Studio)
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rstudio:
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container_name: bridgehead-rstudio
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image: docker.verbis.dkfz.de/ccp/dktk-rstudio:latest
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#TODO: Connect with Keycloak: https://rocker-project.org/images/versioned/rstudio.html
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environment:
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USER: "ruser"
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PASSWORD: "${RSTUDIO_PASSWORD}"
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HTTP_RELATIVE_PATH: "/rstudio"
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labels:
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- "traefik.enable=true"
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- "traefik.http.routers.rstudio_ccp.rule=PathPrefix(`/rstudio`)"
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- "traefik.http.services.rstudio_ccp.loadbalancer.server.port=8787"
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- "traefik.http.routers.rstudio_ccp.tls=true"
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- "traefik.http.middlewares.rstudio_ccp_strip.stripprefix.prefixes=/rstudio"
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- "traefik.http.routers.rstudio_ccp.middlewares=rstudio_ccp_strip"
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#volumes:
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#- "bridgehead-rstudio-config:/home/rstudio/.config/rstudio"
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#- "bridgehead-rstudio-workspace:/home/rstudio/workspace"
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############################################ DataSHIELD Server (Opal)
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opal:
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container_name: bridgehead-opal
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image: docker.verbis.dkfz.de/ccp/dktk-opal:latest
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labels:
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- "traefik.enable=true"
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- "traefik.http.routers.opal_ccp.rule=PathPrefix(`/opal`)"
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- "traefik.http.services.opal_ccp.loadbalancer.server.port=8080"
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- "traefik.http.routers.opal_ccp.tls=true"
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links:
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- opal-rserver
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- opal-db
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environment:
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JAVA_OPTS: "-Xms1G -Xmx8G -XX:+UseG1GC"
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# OPAL_ADMINISTRATOR_USER: "administrator" # Please, don't remove this line. It is informative.
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OPAL_ADMINISTRATOR_PASSWORD: "${OPAL_ADMINISTRATOR_PASSWORD}"
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POSTGRESDATA_HOST: "opal-db"
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POSTGRESDATA_DATABASE: "opal"
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POSTGRESDATA_USER: "opal"
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POSTGRESDATA_PASSWORD: "${OPAL_DB_PASSWORD}"
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ROCK_HOSTS: "opal-rserver:8085"
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APP_URL: "https://${HOST}/opal"
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APP_CONTEXT_PATH: "/opal"
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OPAL_PRIVATE_KEY: "/run/secrets/opal-key.pem"
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OPAL_CERTIFICATE: "/run/secrets/opal-cert.pem"
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secrets:
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- opal-cert.pem
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- opal-key.pem
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# volumes:
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# - "bridgehead-opal:/srv"
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opal-db: # Data
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container_name: bridgehead-opal-db
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image: docker.verbis.dkfz.de/cache/postgres:15.1-alpine
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environment:
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POSTGRES_PASSWORD: "${OPAL_DB_PASSWORD}"
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POSTGRES_USER: "opal"
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POSTGRES_DB: "opal"
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# volumes:
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# - "bridgehead-opal-db:/var/lib/postgresql/data"
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opal-rserver:
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container_name: bridgehead-opal-rserver
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image: datashield/rock-base:6.2-R4.2 # https://datashield.discourse.group/t/ds-aggregate-method-error/416/4
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beam-connect:
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image: docker.verbis.dkfz.de/cache/samply/beam-connect:no-auth
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container_name: bridgehead-datashield-connect
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environment:
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PROXY_URL: "http://beam-proxy:8081"
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TLS_CA_CERTIFICATES_DIR: /run/secrets
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APP_ID: datashield-connect.${SITE_ID}.${BROKER_ID}
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PROXY_APIKEY: ${DATASHIELD_CONNECT_SECRET}
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DISCOVERY_URL: "./map/central.json"
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LOCAL_TARGETS_FILE: "./map/local.json"
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secrets:
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- opal-cert.pem
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depends_on:
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- beam-proxy
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volumes:
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- /etc/bridgehead/datashield-connect/:/map:ro
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beam-proxy:
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environment:
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APP_datashield-connect_KEY: ${DATASHIELD_CONNECT_SECRET}
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#volumes:
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# bridgehead-rstudio-config:
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# name: "bridgehead-rstudio-config"
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# bridgehead-rstudio-workspace:
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# name: "bridgehead-rstudio-workspace"
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# bridgehead-opal-db:
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# name: "bridgehead-opal-db"
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# bridgehead-opal:
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# name: "bridgehead-opal"
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secrets:
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opal-cert.pem:
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file: /etc/bridgehead/trusted-ca-certs/opal-cert.pem
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opal-key.pem:
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file: /etc/bridgehead/trusted-ca-certs/opal-key.pem
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